RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 HSPA1LP34931 641 aa31.22■■■□□ 2.59
CLN3-207ENST00000395653 TRAK1Q9UPV9 953 aa31.2■■■□□ 2.59
CLN3-207ENST00000395653 PRAM1Q96QH2 718 aa31.19■■■□□ 2.58
CLN3-207ENST00000395653 NBPF1Q3BBV0 1214 aa31.17■■■□□ 2.58
CLN3-207ENST00000395653 TRPM1Q7Z4N2 1603 aa31.17■■■□□ 2.58
CLN3-207ENST00000395653 POGKQ9P215 609 aa31.15■■■□□ 2.58
CLN3-207ENST00000395653 ARHGEF28Q8N1W1 1705 aaKnown RBP31.14■■■□□ 2.58
CLN3-207ENST00000395653 C1orf167Q5SNV9 1468 aa31.12■■■□□ 2.57
CLN3-207ENST00000395653 BRINP3Q76B58 766 aa31.11■■■□□ 2.57
CLN3-207ENST00000395653 NBPF8Q3BBV2 869 aa31.1■■■□□ 2.57
CLN3-207ENST00000395653 ADGRB2O60241 1585 aa31.09■■■□□ 2.57
CLN3-207ENST00000395653 SAFB2Q14151 953 aaKnown RBP eCLIP31.09■■■□□ 2.57
CLN3-207ENST00000395653 CCER1Q8TC90 406 aaPredicted RBP31.09■■■□□ 2.57
CLN3-207ENST00000395653 AHDC1Q5TGY3 1603 aaPredicted RBP31.07■■■□□ 2.56
CLN3-207ENST00000395653 ROCK2O75116 1388 aaKnown RBP31.07■■■□□ 2.56
CLN3-207ENST00000395653 FMN2Q9NZ56 1722 aa31.07■■■□□ 2.56
CLN3-207ENST00000395653 TIMELESSQ9UNS1 1208 aa31.04■■■□□ 2.56
CLN3-207ENST00000395653 GPRASP1Q5JY77 1395 aa31.04■■■□□ 2.56
CLN3-207ENST00000395653 PHLPP1O60346 1717 aa31.04■■■□□ 2.56
CLN3-207ENST00000395653 RALGAPBQ86X10 1494 aa31.02■■■□□ 2.56
CLN3-207ENST00000395653 NHSL1Q5SYE7 1610 aa31.01■■■□□ 2.55
CLN3-207ENST00000395653 MINK1Q8N4C8 1332 aaPredicted RBP31■■■□□ 2.55
CLN3-207ENST00000395653 COL16A1Q07092 1604 aaPredicted RBP31■■■□□ 2.55
CLN3-207ENST00000395653 ORAI2Q96SN7 254 aa30.99■■■□□ 2.55
CLN3-207ENST00000395653 HIRIP3Q9BW71 556 aaPredicted RBP30.98■■■□□ 2.55
CLN3-207ENST00000395653 NUTM2FA1L443 756 aa30.97■■■□□ 2.55
CLN3-207ENST00000395653 CENPJQ9HC77 1338 aaPredicted RBP30.96■■■□□ 2.55
CLN3-207ENST00000395653 ESCO1Q5FWF5 840 aa30.96■■■□□ 2.55
CLN3-207ENST00000395653 ANKARQ7Z5J8 1434 aa30.96■■■□□ 2.55
CLN3-207ENST00000395653 EIF3AQ14152 1382 aaKnown RBP30.95■■■□□ 2.55
CLN3-207ENST00000395653 WASLO00401 505 aaPredicted RBP30.94■■■□□ 2.54
CLN3-207ENST00000395653 CARD11Q9BXL7 1154 aa30.92■■■□□ 2.54
CLN3-207ENST00000395653 TULP4Q9NRJ4 1543 aa30.92■■■□□ 2.54
CLN3-207ENST00000395653 USP32Q8NFA0 1604 aa30.91■■■□□ 2.54
CLN3-207ENST00000395653 KIF1AQ12756 1690 aa30.91■■■□□ 2.54
CLN3-207ENST00000395653 QRICH2Q9H0J4 1663 aa30.9■■■□□ 2.54
CLN3-207ENST00000395653 JCADQ9P266 1359 aa30.89■■■□□ 2.54
CLN3-207ENST00000395653 DDX17Q92841 729 aaKnown RBP30.89■■■□□ 2.53
CLN3-207ENST00000395653 RGPD8O14715 1765 aaPredicted RBP30.88■■■□□ 2.53
CLN3-207ENST00000395653 NPHP3Q7Z494 1330 aa30.87■■■□□ 2.53
CLN3-207ENST00000395653 SOS2Q07890 1332 aaPredicted RBP30.86■■■□□ 2.53
CLN3-207ENST00000395653 PHF8Q9UPP1 1060 aa30.84■■■□□ 2.53
CLN3-207ENST00000395653 PRR36Q9H6K5 1346 aa30.84■■■□□ 2.53
CLN3-207ENST00000395653 LRRC59Q96AG4 307 aaKnown RBP30.83■■■□□ 2.53
CLN3-207ENST00000395653 CDK19Q9BWU1 502 aa30.83■■■□□ 2.53
CLN3-207ENST00000395653 ATP7BP35670 1465 aa30.83■■■□□ 2.53
CLN3-207ENST00000395653 SHPRHQ149N8 1683 aa30.83■■■□□ 2.53
CLN3-207ENST00000395653 FOXO3O43524 673 aa30.82■■■□□ 2.52
CLN3-207ENST00000395653 PXDNQ92626 1479 aa30.81■■■□□ 2.52
CLN3-207ENST00000395653 MED1Q15648 1581 aaPredicted RBP30.81■■■□□ 2.52
CLN3-207ENST00000395653 ITSN1Q15811 1721 aa30.78■■■□□ 2.52
CLN3-207ENST00000395653 SBNO2Q9Y2G9 1366 aa30.78■■■□□ 2.52
CLN3-207ENST00000395653 NUDT16Q96DE0 195 aaKnown RBP30.78■■■□□ 2.52
CLN3-207ENST00000395653 SPATA31A6Q5VVP1 1343 aa30.76■■■□□ 2.52
CLN3-207ENST00000395653 TOPAZ1Q8N9V7 1692 aa30.74■■■□□ 2.51
CLN3-207ENST00000395653 SRPK2P78362 688 aaKnown RBP30.74■■■□□ 2.51
CLN3-207ENST00000395653 PMFBP1Q8TBY8 1022 aa30.74■■■□□ 2.51
CLN3-207ENST00000395653 EVC2Q86UK5 1308 aa30.74■■■□□ 2.51
CLN3-207ENST00000395653 PNPLA6Q8IY17 1366 aa30.73■■■□□ 2.51
CLN3-207ENST00000395653 XPCQ01831 940 aaPredicted RBP30.73■■■□□ 2.51
CLN3-207ENST00000395653 CCDC61Q9Y6R9 512 aa30.73■■■□□ 2.51
CLN3-207ENST00000395653 KRT28Q7Z3Y7 464 aa30.71■■■□□ 2.51
CLN3-207ENST00000395653 CABP2Q9NPB3 220 aa30.71■■■□□ 2.51
CLN3-207ENST00000395653 DISP3Q9P2K9 1392 aa30.69■■■□□ 2.5
CLN3-207ENST00000395653 PSME1Q06323 249 aa30.68■■■□□ 2.5
CLN3-207ENST00000395653 USP47Q96K76 1375 aa30.67■■■□□ 2.5
CLN3-207ENST00000395653 NGDNQ8NEJ9 315 aaKnown RBP30.66■■■□□ 2.5
CLN3-207ENST00000395653 SPATA31A3Q5VYP0 1347 aa30.66■■■□□ 2.5
CLN3-207ENST00000395653 LRP6O75581 1613 aa30.66■■■□□ 2.5
CLN3-207ENST00000395653 COL22A1Q8NFW1 1626 aaPredicted RBP30.66■■■□□ 2.5
CLN3-207ENST00000395653 SBNO1A3KN83 1393 aa30.66■■■□□ 2.5
CLN3-207ENST00000395653 PLEKHG3A1L390 1219 aa30.65■■■□□ 2.5
CLN3-207ENST00000395653 PPIP5K1Q6PFW1 1433 aa30.65■■■□□ 2.5
CLN3-207ENST00000395653 ST20-MTHFSA0A0A6YYL1 179 aa30.64■■■□□ 2.5
CLN3-207ENST00000395653 POLR3AO14802 1390 aaPredicted RBP30.64■■■□□ 2.5
CLN3-207ENST00000395653 TNS3Q68CZ2 1445 aa30.64■■■□□ 2.5
CLN3-207ENST00000395653 TESK2Q96S53 571 aa30.62■■■□□ 2.49
CLN3-207ENST00000395653 TRPM3Q9HCF6 1732 aaPredicted RBP30.61■■■□□ 2.49
CLN3-207ENST00000395653 SLC24A1O60721 1099 aa30.61■■■□□ 2.49
CLN3-207ENST00000395653 ACEP12821 1306 aa30.6■■■□□ 2.49
CLN3-207ENST00000395653 ATAD2Q6PL18 1390 aa30.6■■■□□ 2.49
CLN3-207ENST00000395653 PHF23Q9BUL5 403 aaPredicted RBP30.59■■■□□ 2.49
CLN3-207ENST00000395653 NUTM2BA6NNL0 878 aaPredicted RBP30.58■■■□□ 2.49
CLN3-207ENST00000395653 NUTM2EB1AL46 878 aaPredicted RBP30.58■■■□□ 2.49
CLN3-207ENST00000395653 NUTM2AQ8IVF1 878 aaPredicted RBP30.58■■■□□ 2.49
CLN3-207ENST00000395653 ARHGEF10O15013 1369 aa30.56■■■□□ 2.48
CLN3-207ENST00000395653 CABP1Q9NZU7 370 aa30.56■■■□□ 2.48
CLN3-207ENST00000395653 PUS7Q96PZ0 661 aaKnown RBP30.55■■■□□ 2.48
CLN3-207ENST00000395653 ALS2Q96Q42 1657 aa30.54■■■□□ 2.48
CLN3-207ENST00000395653 MEX3CQ5U5Q3 659 aaKnown RBP30.54■■■□□ 2.48
CLN3-207ENST00000395653 LMOD2Q6P5Q4 547 aa30.49■■■□□ 2.47
CLN3-207ENST00000395653 BRD4O60885 1362 aaPredicted RBP30.49■■■□□ 2.47
CLN3-207ENST00000395653 PAK3O75914 559 aaPredicted RBP30.48■■■□□ 2.47
CLN3-207ENST00000395653 USP6P35125 1406 aa30.47■■■□□ 2.47
CLN3-207ENST00000395653 TMF1P82094 1093 aa30.47■■■□□ 2.47
CLN3-207ENST00000395653 RGS17Q9UGC6 210 aaPredicted RBP30.47■■■□□ 2.47
CLN3-207ENST00000395653 ADAMTS2O95450 1211 aa30.45■■■□□ 2.46
CLN3-207ENST00000395653 ZNF692Q9BU19 519 aaPredicted RBP30.45■■■□□ 2.46
CLN3-207ENST00000395653 EIF4G2P78344 907 aaKnown RBP eCLIP30.44■■■□□ 2.461e-9■■■■□ 22.4
CLN3-207ENST00000395653 CPSF1Q10570 1443 aaKnown RBP30.44■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms