RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 CCDC144AA2RUR9 1427 aa10.8□□□□□ -0.68
LIMS1-203ENST00000393310 BCORL1Q5H9F3 1711 aa10.8□□□□□ -0.68
LIMS1-203ENST00000393310 FER1L4A9Z1Z3 1794 aa10.8□□□□□ -0.68
LIMS1-203ENST00000393310 PREX1Q8TCU6 1659 aa10.79□□□□□ -0.68
LIMS1-203ENST00000393310 ZNF644Q9H582 1327 aaPredicted RBP10.79□□□□□ -0.68
LIMS1-203ENST00000393310 SOX12O15370 315 aa10.78□□□□□ -0.68
LIMS1-203ENST00000393310 MYO5CQ9NQX4 1742 aa10.78□□□□□ -0.68
LIMS1-203ENST00000393310 GTF2E1P29083 439 aaPredicted RBP10.78□□□□□ -0.68
LIMS1-203ENST00000393310 HIRIP3Q9BW71 556 aaPredicted RBP10.78□□□□□ -0.68
LIMS1-203ENST00000393310 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.78□□□□□ -0.68
LIMS1-203ENST00000393310 GPATCH8Q9UKJ3 1502 aaKnown RBP10.78□□□□□ -0.68
LIMS1-203ENST00000393310 G3V3G9 751 aa10.78□□□□□ -0.68
LIMS1-203ENST00000393310 DCAF8Q5TAQ9 597 aa10.78□□□□□ -0.68
LIMS1-203ENST00000393310 RRBP1Q9P2E9 1410 aaKnown RBP10.78□□□□□ -0.68
LIMS1-203ENST00000393310 PLEKHG1Q9ULL1 1385 aa10.77□□□□□ -0.68
LIMS1-203ENST00000393310 NLRP6P59044 892 aa10.77□□□□□ -0.69
LIMS1-203ENST00000393310 VPS8Q8N3P4 1428 aa10.77□□□□□ -0.69
LIMS1-203ENST00000393310 VSIG10Q8N0Z9 540 aa10.77□□□□□ -0.69
LIMS1-203ENST00000393310 DUOX2Q9NRD8 1548 aa10.76□□□□□ -0.69
LIMS1-203ENST00000393310 SMARCC1Q92922 1105 aaPredicted RBP10.76□□□□□ -0.69
LIMS1-203ENST00000393310 GPBP1L1Q9HC44 474 aaPredicted RBP10.76□□□□□ -0.69
LIMS1-203ENST00000393310 ERBINQ96RT1 1412 aa10.76□□□□□ -0.69
LIMS1-203ENST00000393310 ARHGEF12Q9NZN5 1544 aa10.76□□□□□ -0.69
LIMS1-203ENST00000393310 PAXIP1Q6ZW49 1069 aaPredicted RBP10.76□□□□□ -0.69
LIMS1-203ENST00000393310 ZNF692Q9BU19 519 aaPredicted RBP10.76□□□□□ -0.69
LIMS1-203ENST00000393310 SYCP2Q9BX26 1530 aa10.75□□□□□ -0.69
LIMS1-203ENST00000393310 CEP170BQ9Y4F5 1589 aaPredicted RBP10.75□□□□□ -0.69
LIMS1-203ENST00000393310 DEKP35659 375 aaKnown RBP10.75□□□□□ -0.69
LIMS1-203ENST00000393310 FAM98CQ17RN3 349 aaKnown RBP10.75□□□□□ -0.69
LIMS1-203ENST00000393310 ABCC1P33527 1531 aa10.74□□□□□ -0.69
LIMS1-203ENST00000393310 EVC2Q86UK5 1308 aa10.74□□□□□ -0.69
LIMS1-203ENST00000393310 POTEAQ6S8J7 498 aa10.74□□□□□ -0.69
LIMS1-203ENST00000393310 AK7Q96M32 723 aa10.74□□□□□ -0.69
LIMS1-203ENST00000393310 TFCP2L1Q9NZI6 479 aa10.74□□□□□ -0.69
LIMS1-203ENST00000393310 CHMP4AQ9BY43 222 aa10.74□□□□□ -0.69
LIMS1-203ENST00000393310 XPCQ01831 940 aaPredicted RBP10.73□□□□□ -0.69
LIMS1-203ENST00000393310 PTCH1Q13635 1447 aa10.73□□□□□ -0.69
LIMS1-203ENST00000393310 R3HDM1Q15032 1099 aaKnown RBP10.73□□□□□ -0.69
LIMS1-203ENST00000393310 NKTRP30414 1462 aaKnown RBP10.73□□□□□ -0.69
LIMS1-203ENST00000393310 BTG4Q9NY30 223 aa10.72□□□□□ -0.69
LIMS1-203ENST00000393310 MINK1Q8N4C8 1332 aaPredicted RBP10.72□□□□□ -0.69
LIMS1-203ENST00000393310 EFCAB6Q5THR3 1501 aa10.72□□□□□ -0.69
LIMS1-203ENST00000393310 PSDA5PKW4 1024 aaPredicted RBP10.72□□□□□ -0.69
LIMS1-203ENST00000393310 TCP11L2Q8N4U5 519 aa10.72□□□□□ -0.69
LIMS1-203ENST00000393310 ITSN2Q9NZM3 1697 aa10.72□□□□□ -0.69
LIMS1-203ENST00000393310 BRINP3Q76B58 766 aa10.72□□□□□ -0.69
LIMS1-203ENST00000393310 ABCC3O15438 1527 aa10.72□□□□□ -0.69
LIMS1-203ENST00000393310 TATP17735 454 aaPredicted RBP10.72□□□□□ -0.69
LIMS1-203ENST00000393310 ZNF316A6NFI3 1004 aaPredicted RBP10.71□□□□□ -0.69
LIMS1-203ENST00000393310 NPM3O75607 178 aaKnown RBP10.71□□□□□ -0.7
LIMS1-203ENST00000393310 LTKP29376 864 aa10.71□□□□□ -0.7
LIMS1-203ENST00000393310 SLC16A10Q8TF71 515 aa10.71□□□□□ -0.7
LIMS1-203ENST00000393310 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.71□□□□□ -0.7
LIMS1-203ENST00000393310 TRAK1Q9UPV9 953 aa10.7□□□□□ -0.7
LIMS1-203ENST00000393310 PARD3Q8TEW0 1356 aa10.7□□□□□ -0.7
LIMS1-203ENST00000393310 HFM1A2PYH4 1435 aa10.7□□□□□ -0.7
LIMS1-203ENST00000393310 SMG6Q86US8 1419 aaKnown RBP10.7□□□□□ -0.7
LIMS1-203ENST00000393310 ZC3H6P61129 1189 aaKnown RBP10.7□□□□□ -0.7
LIMS1-203ENST00000393310 VPS72Q15906 364 aa10.7□□□□□ -0.7
LIMS1-203ENST00000393310 HSP90AB1P08238 724 aaKnown RBP10.7□□□□□ -0.7
LIMS1-203ENST00000393310 CAMSAP2Q08AD1 1489 aa10.69□□□□□ -0.7
LIMS1-203ENST00000393310 KCNQ2O43526 872 aa10.69□□□□□ -0.7
LIMS1-203ENST00000393310 CNGB1Q14028 1251 aaPredicted RBP10.69□□□□□ -0.7
LIMS1-203ENST00000393310 DHX37Q8IY37 1157 aaKnown RBP10.69□□□□□ -0.7
LIMS1-203ENST00000393310 THRAP3Q9Y2W1 955 aaKnown RBP10.69□□□□□ -0.7
LIMS1-203ENST00000393310 DPY19L2Q6NUT2 758 aa10.69□□□□□ -0.7
LIMS1-203ENST00000393310 DCAF11Q8TEB1 546 aa10.69□□□□□ -0.7
LIMS1-203ENST00000393310 CABP2Q9NPB3 220 aa10.69□□□□□ -0.7
LIMS1-203ENST00000393310 TNNT2P45379 298 aaPredicted RBP10.69□□□□□ -0.7
LIMS1-203ENST00000393310 COG3Q96JB2 828 aa10.69□□□□□ -0.7
LIMS1-203ENST00000393310 BLMP54132 1417 aaPredicted RBP10.69□□□□□ -0.7
LIMS1-203ENST00000393310 ADAMTSL3P82987 1691 aa10.68□□□□□ -0.7
LIMS1-203ENST00000393310 PPARGC1BQ86YN6 1023 aaKnown RBP10.68□□□□□ -0.7
LIMS1-203ENST00000393310 C1orf141Q5JVX7 400 aa10.67□□□□□ -0.7
LIMS1-203ENST00000393310 SUPT6HQ7KZ85 1726 aaKnown RBP10.67□□□□□ -0.7
LIMS1-203ENST00000393310 CFAP53Q96M91 514 aa10.66□□□□□ -0.7
LIMS1-203ENST00000393310 CCDC61Q9Y6R9 512 aa10.66□□□□□ -0.7
LIMS1-203ENST00000393310 ERVK-7P63135 1459 aa10.66□□□□□ -0.7
LIMS1-203ENST00000393310 LOC105371045A0A1W2PR82 267 aa10.65□□□□□ -0.7
LIMS1-203ENST00000393310 PPM1GO15355 546 aaPredicted RBP10.65□□□□□ -0.7
LIMS1-203ENST00000393310 TMEM132AQ24JP5 1023 aa10.65□□□□□ -0.7
LIMS1-203ENST00000393310 TRIM37O94972 964 aa10.65□□□□□ -0.7
LIMS1-203ENST00000393310 KDM2BQ8NHM5 1336 aa10.65□□□□□ -0.7
LIMS1-203ENST00000393310 SAMD9Q5K651 1589 aa10.65□□□□□ -0.7
LIMS1-203ENST00000393310 ZNF526Q8TF50 670 aaPredicted RBP10.65□□□□□ -0.7
LIMS1-203ENST00000393310 ARID3AQ99856 593 aa10.65□□□□□ -0.71
LIMS1-203ENST00000393310 CCDC87Q9NVE4 849 aa10.65□□□□□ -0.71
LIMS1-203ENST00000393310 SPG7Q9UQ90 795 aa10.64□□□□□ -0.71
LIMS1-203ENST00000393310 LTV1Q96GA3 475 aaPredicted RBP10.64□□□□□ -0.71
LIMS1-203ENST00000393310 EN1Q05925 392 aaPredicted RBP10.64□□□□□ -0.71
LIMS1-203ENST00000393310 DCCP43146 1447 aa10.64□□□□□ -0.71
LIMS1-203ENST00000393310 DAPK1P53355 1430 aa10.64□□□□□ -0.71
LIMS1-203ENST00000393310 PRAM1Q96QH2 718 aa10.63□□□□□ -0.71
LIMS1-203ENST00000393310 NSD3Q9BZ95 1437 aa10.63□□□□□ -0.71
LIMS1-203ENST00000393310 KDM5CP41229 1560 aa10.63□□□□□ -0.71
LIMS1-203ENST00000393310 NEUROD1Q13562 356 aa10.63□□□□□ -0.71
LIMS1-203ENST00000393310 PARP3Q9Y6F1 533 aa10.63□□□□□ -0.71
LIMS1-203ENST00000393310 TONSLQ96HA7 1378 aa10.63□□□□□ -0.71
LIMS1-203ENST00000393310 TRPM2O94759 1503 aa10.63□□□□□ -0.71
LIMS1-203ENST00000393310 CLEC11AQ9Y240 323 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms