RNA–Protein interactions for RNA: ENST00000393119.6

MKS1-202, Transcript of Meckel syndrome, type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MKS1, Length 2,397 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-202ENST00000393119 NRXN3Q9Y4C0 1643 aa20.23■□□□□ 0.83
MKS1-202ENST00000393119 UBR1Q8IWV7 1749 aa20.22■□□□□ 0.83
MKS1-202ENST00000393119 FER1L4A9Z1Z3 1794 aa20.22■□□□□ 0.83
MKS1-202ENST00000393119 CDK19Q9BWU1 502 aa20.21■□□□□ 0.83
MKS1-202ENST00000393119 NSD3Q9BZ95 1437 aa20.2■□□□□ 0.82
MKS1-202ENST00000393119 SLC24A1O60721 1099 aa20.2■□□□□ 0.82
MKS1-202ENST00000393119 NCKAP5LQ9HCH0 1330 aa20.19■□□□□ 0.82
MKS1-202ENST00000393119 LRPPRCP42704 1394 aaKnown RBP20.18■□□□□ 0.82
MKS1-202ENST00000393119 SETD1AO15047 1707 aaKnown RBP20.17■□□□□ 0.82
MKS1-202ENST00000393119 ADAMTS13Q76LX8 1427 aa20.16■□□□□ 0.82
MKS1-202ENST00000393119 HDGFP51858 240 aaKnown RBP20.15■□□□□ 0.82
MKS1-202ENST00000393119 CABP1Q9NZU7 370 aa20.15■□□□□ 0.82
MKS1-202ENST00000393119 NLRP1Q9C000 1473 aa20.15■□□□□ 0.82
MKS1-202ENST00000393119 ZBED9Q6R2W3 1325 aa20.15■□□□□ 0.82
MKS1-202ENST00000393119 NUTM2FA1L443 756 aa20.14■□□□□ 0.81
MKS1-202ENST00000393119 ADAMTS8Q9UP79 889 aa20.14■□□□□ 0.81
MKS1-202ENST00000393119 ABCC11Q96J66 1382 aa20.14■□□□□ 0.81
MKS1-202ENST00000393119 RIMS1Q86UR5 1692 aaKnown RBP20.13■□□□□ 0.81
MKS1-202ENST00000393119 IRX6P78412 446 aaPredicted RBP20.13■□□□□ 0.81
MKS1-202ENST00000393119 ROBO2Q9HCK4 1378 aa20.13■□□□□ 0.81
MKS1-202ENST00000393119 A0A1W2PP64 1363 aa20.12■□□□□ 0.81
MKS1-202ENST00000393119 EID1Q9Y6B2 187 aa20.12■□□□□ 0.81
MKS1-202ENST00000393119 FKBP8Q14318 412 aa20.12■□□□□ 0.81
MKS1-202ENST00000393119 THEMISQ8N1K5 641 aaPredicted RBP20.1■□□□□ 0.81
MKS1-202ENST00000393119 TSHZ2Q9NRE2 1034 aa20.1■□□□□ 0.81
MKS1-202ENST00000393119 PTPRUQ92729 1446 aa20.1■□□□□ 0.81
MKS1-202ENST00000393119 MORC1Q86VD1 984 aa20.1■□□□□ 0.81
MKS1-202ENST00000393119 GGNBP2Q9H3C7 697 aa20.09■□□□□ 0.81
MKS1-202ENST00000393119 PLEKHG1Q9ULL1 1385 aa20.09■□□□□ 0.81
MKS1-202ENST00000393119 ANKRD36BQ8N2N9 1353 aa20.09■□□□□ 0.81
MKS1-202ENST00000393119 NPC1L1Q9UHC9 1359 aa20.08■□□□□ 0.8
MKS1-202ENST00000393119 FBLN1P23142 703 aa20.07■□□□□ 0.8
MKS1-202ENST00000393119 CD163L1Q9NR16 1453 aa20.07■□□□□ 0.8
MKS1-202ENST00000393119 WASLO00401 505 aaPredicted RBP20.07■□□□□ 0.8
MKS1-202ENST00000393119 RBM33Q96EV2 1170 aaKnown RBP20.07■□□□□ 0.8
MKS1-202ENST00000393119 AMOTL2Q9Y2J4 779 aa20.07■□□□□ 0.8
MKS1-202ENST00000393119 CCDC146Q8IYE0 955 aa20.06■□□□□ 0.8
MKS1-202ENST00000393119 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.06■□□□□ 0.8
MKS1-202ENST00000393119 PUS7Q96PZ0 661 aaKnown RBP20.06■□□□□ 0.8
MKS1-202ENST00000393119 ARHGAP23Q9P227 1491 aa20.05■□□□□ 0.8
MKS1-202ENST00000393119 CGNL1Q0VF96 1302 aa20.04■□□□□ 0.8
MKS1-202ENST00000393119 DLC1Q96QB1 1528 aa20.04■□□□□ 0.8
MKS1-202ENST00000393119 ANP32EQ9BTT0 268 aa20.04■□□□□ 0.8
MKS1-202ENST00000393119 ATAD2Q6PL18 1390 aa20.03■□□□□ 0.8
MKS1-202ENST00000393119 CDCA7LQ96GN5 454 aa20.03■□□□□ 0.8
MKS1-202ENST00000393119 PRR36Q9H6K5 1346 aa20.03■□□□□ 0.8
MKS1-202ENST00000393119 SLIT1O75093 1534 aa20.03■□□□□ 0.8
MKS1-202ENST00000393119 FYB1O15117 783 aa20.02■□□□□ 0.8
MKS1-202ENST00000393119 NUDT16Q96DE0 195 aaKnown RBP20.02■□□□□ 0.8
MKS1-202ENST00000393119 MED14O60244 1454 aa20.02■□□□□ 0.8
MKS1-202ENST00000393119 WDR43Q15061 677 aaKnown RBP eCLIP20.02■□□□□ 0.8
MKS1-202ENST00000393119 MTHFSP49914 203 aa20.01■□□□□ 0.79
MKS1-202ENST00000393119 ZRANB1Q9UGI0 708 aa20.01■□□□□ 0.79
MKS1-202ENST00000393119 ADAMTSL3P82987 1691 aa20■□□□□ 0.79
MKS1-202ENST00000393119 TERF2IPQ9NYB0 399 aa20■□□□□ 0.79
MKS1-202ENST00000393119 CEP170BQ9Y4F5 1589 aaPredicted RBP20■□□□□ 0.79
MKS1-202ENST00000393119 TECPR2O15040 1411 aa19.99■□□□□ 0.79
MKS1-202ENST00000393119 KCNA6P17658 529 aa19.99■□□□□ 0.79
MKS1-202ENST00000393119 TBX22Q9Y458 520 aa19.99■□□□□ 0.79
MKS1-202ENST00000393119 HDGFL2Q7Z4V5 671 aaPredicted RBP19.98■□□□□ 0.79
MKS1-202ENST00000393119 FAM135BQ49AJ0 1406 aa19.97■□□□□ 0.79
MKS1-202ENST00000393119 PPIP5K1Q6PFW1 1433 aa19.97■□□□□ 0.79
MKS1-202ENST00000393119 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.96■□□□□ 0.79
MKS1-202ENST00000393119 BLMP54132 1417 aaPredicted RBP19.96■□□□□ 0.79
MKS1-202ENST00000393119 CPS1P31327 1500 aa19.96■□□□□ 0.79
MKS1-202ENST00000393119 SIRT1Q96EB6 747 aa19.95■□□□□ 0.78
MKS1-202ENST00000393119 ANKLE2Q86XL3 938 aa19.94■□□□□ 0.78
MKS1-202ENST00000393119 NME9Q86XW9 330 aa19.94■□□□□ 0.78
MKS1-202ENST00000393119 NUDCQ9Y266 331 aa19.94■□□□□ 0.78
MKS1-202ENST00000393119 CCDC61Q9Y6R9 512 aa19.93■□□□□ 0.78
MKS1-202ENST00000393119 NINLQ9Y2I6 1382 aa19.93■□□□□ 0.78
MKS1-202ENST00000393119 APAF1O14727 1248 aa19.92■□□□□ 0.78
MKS1-202ENST00000393119 PMFBP1Q8TBY8 1022 aa19.92■□□□□ 0.78
MKS1-202ENST00000393119 NEFLP07196 543 aa19.92■□□□□ 0.78
MKS1-202ENST00000393119 SMG6Q86US8 1419 aaKnown RBP19.91■□□□□ 0.78
MKS1-202ENST00000393119 KNDC1Q76NI1 1749 aa19.91■□□□□ 0.78
MKS1-202ENST00000393119 PPM1GO15355 546 aaPredicted RBP19.9■□□□□ 0.78
MKS1-202ENST00000393119 ATP7BP35670 1465 aa19.89■□□□□ 0.78
MKS1-202ENST00000393119 POLR3AO14802 1390 aaPredicted RBP19.89■□□□□ 0.77
MKS1-202ENST00000393119 RRP7AQ9Y3A4 280 aaKnown RBP19.88■□□□□ 0.77
MKS1-202ENST00000393119 USP32Q8NFA0 1604 aa19.88■□□□□ 0.77
MKS1-202ENST00000393119 CPSF1Q10570 1443 aaKnown RBP19.88■□□□□ 0.77
MKS1-202ENST00000393119 NEUROD2Q15784 382 aa19.88■□□□□ 0.77
MKS1-202ENST00000393119 DMRT2Q9Y5R5 561 aa19.87■□□□□ 0.77
MKS1-202ENST00000393119 ACEP12821 1306 aa19.87■□□□□ 0.77
MKS1-202ENST00000393119 SPINK5Q9NQ38 1064 aaPredicted RBP19.86■□□□□ 0.77
MKS1-202ENST00000393119 NSD2O96028 1365 aa19.85■□□□□ 0.77
MKS1-202ENST00000393119 NKTRP30414 1462 aaKnown RBP19.84■□□□□ 0.77
MKS1-202ENST00000393119 HSPA2P54652 639 aa19.84■□□□□ 0.77
MKS1-202ENST00000393119 EMILIN1Q9Y6C2 1016 aa19.84■□□□□ 0.77
MKS1-202ENST00000393119 U2SURPO15042 1029 aaKnown RBP19.83■□□□□ 0.77
MKS1-202ENST00000393119 SOX12O15370 315 aa19.83■□□□□ 0.77
MKS1-202ENST00000393119 U2AF1L5P0DN76 240 aaPredicted RBP19.83■□□□□ 0.77
MKS1-202ENST00000393119 U2AF1Q01081 240 aaKnown RBP eCLIP19.83■□□□□ 0.77
MKS1-202ENST00000393119 RRS1Q15050 365 aaKnown RBP19.83■□□□□ 0.77
MKS1-202ENST00000393119 POLKQ9UBT6 870 aa19.82■□□□□ 0.76
MKS1-202ENST00000393119 SHPRHQ149N8 1683 aa19.82■□□□□ 0.76
MKS1-202ENST00000393119 CFAP53Q96M91 514 aa19.81■□□□□ 0.76
MKS1-202ENST00000393119 BCL11AQ9H165 835 aa19.81■□□□□ 0.76
MKS1-202ENST00000393119 PTCH1Q13635 1447 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms