RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 GLIPR1L2Q4G1C9 344 aa20.55■□□□□ 0.88
SCN3B-202ENST00000392770 GOLGA6L6A8MZA4 724 aa20.54■□□□□ 0.88
SCN3B-202ENST00000392770 TULP1O00294 542 aaPredicted RBP20.54■□□□□ 0.88
SCN3B-202ENST00000392770 RAPGEF4Q8WZA2 1011 aa20.54■□□□□ 0.88
SCN3B-202ENST00000392770 GZF1Q9H116 711 aaPredicted RBP20.53■□□□□ 0.88
SCN3B-202ENST00000392770 ZNF692Q9BU19 519 aaPredicted RBP20.53■□□□□ 0.88
SCN3B-202ENST00000392770 ATAD2Q6PL18 1390 aa20.53■□□□□ 0.88
SCN3B-202ENST00000392770 NSD3Q9BZ95 1437 aa20.52■□□□□ 0.88
SCN3B-202ENST00000392770 PROSER2Q86WR7 435 aaPredicted RBP20.52■□□□□ 0.88
SCN3B-202ENST00000392770 ISY1Q9ULR0 285 aaKnown RBP20.52■□□□□ 0.88
SCN3B-202ENST00000392770 ST18O60284 1047 aa20.52■□□□□ 0.88
SCN3B-202ENST00000392770 NLRP2Q9NX02 1062 aa20.52■□□□□ 0.88
SCN3B-202ENST00000392770 C11orf95C9JLR9 678 aaPredicted RBP20.52■□□□□ 0.88
SCN3B-202ENST00000392770 RTN4Q9NQC3 1192 aaKnown RBP20.52■□□□□ 0.88
SCN3B-202ENST00000392770 DENND4BO75064 1496 aaPredicted RBP20.52■□□□□ 0.87
SCN3B-202ENST00000392770 SLC26A8Q96RN1 970 aa20.52■□□□□ 0.87
SCN3B-202ENST00000392770 DDX58O95786 925 aaKnown RBP20.5■□□□□ 0.87
SCN3B-202ENST00000392770 TMX4Q9H1E5 349 aaPredicted RBP20.5■□□□□ 0.87
SCN3B-202ENST00000392770 GTF2E1P29083 439 aaPredicted RBP20.5■□□□□ 0.87
SCN3B-202ENST00000392770 SYCP2Q9BX26 1530 aa20.5■□□□□ 0.87
SCN3B-202ENST00000392770 EXOSC9Q06265 439 aaKnown RBP20.49■□□□□ 0.87
SCN3B-202ENST00000392770 MAPKBP1O60336 1514 aa20.49■□□□□ 0.87
SCN3B-202ENST00000392770 PLCH2O75038 1416 aa20.48■□□□□ 0.87
SCN3B-202ENST00000392770 SLC4A3P48751 1232 aa20.48■□□□□ 0.87
SCN3B-202ENST00000392770 GAS2L2Q8NHY3 880 aa20.48■□□□□ 0.87
SCN3B-202ENST00000392770 ADGRF5Q8IZF2 1346 aa20.48■□□□□ 0.87
SCN3B-202ENST00000392770 SYTL4Q96C24 671 aaPredicted RBP20.48■□□□□ 0.87
SCN3B-202ENST00000392770 SMG6Q86US8 1419 aaKnown RBP20.48■□□□□ 0.87
SCN3B-202ENST00000392770 ANKLE2Q86XL3 938 aa20.47■□□□□ 0.87
SCN3B-202ENST00000392770 DHX29Q7Z478 1369 aaKnown RBP20.47■□□□□ 0.87
SCN3B-202ENST00000392770 AAMPQ13685 434 aa20.46■□□□□ 0.87
SCN3B-202ENST00000392770 TCOF1Q13428 1488 aaKnown RBP20.46■□□□□ 0.87
SCN3B-202ENST00000392770 DUOX2Q9NRD8 1548 aa20.46■□□□□ 0.87
SCN3B-202ENST00000392770 TSR2Q969E8 191 aaKnown RBP20.45■□□□□ 0.86
SCN3B-202ENST00000392770 ASXL2Q76L83 1435 aa20.45■□□□□ 0.86
SCN3B-202ENST00000392770 NOS1P29475 1434 aa20.44■□□□□ 0.86
SCN3B-202ENST00000392770 FBXO31Q5XUX0 539 aaPredicted RBP20.44■□□□□ 0.86
SCN3B-202ENST00000392770 HTATSF1O43719 755 aaKnown RBP20.44■□□□□ 0.86
SCN3B-202ENST00000392770 SULT6B1Q6IMI4 303 aa20.44■□□□□ 0.86
SCN3B-202ENST00000392770 KDM5BQ9UGL1 1544 aa20.43■□□□□ 0.86
SCN3B-202ENST00000392770 WAPLQ7Z5K2 1190 aa20.43■□□□□ 0.86
SCN3B-202ENST00000392770 NAP1L5Q96NT1 182 aaPredicted RBP20.43■□□□□ 0.86
SCN3B-202ENST00000392770 DIAPH3Q9NSV4 1193 aa20.43■□□□□ 0.86
SCN3B-202ENST00000392770 FRAT2O75474 233 aaPredicted RBP20.43■□□□□ 0.86
SCN3B-202ENST00000392770 IFIT2P09913 472 aaKnown RBP20.43■□□□□ 0.86
SCN3B-202ENST00000392770 ABCA5Q8WWZ7 1642 aa20.42■□□□□ 0.86
SCN3B-202ENST00000392770 RRS1Q15050 365 aaKnown RBP20.42■□□□□ 0.86
SCN3B-202ENST00000392770 LNPKQ9C0E8 428 aa20.42■□□□□ 0.86
SCN3B-202ENST00000392770 DRC7Q8IY82 874 aa20.42■□□□□ 0.86
SCN3B-202ENST00000392770 BCAR3O75815 825 aa20.42■□□□□ 0.86
SCN3B-202ENST00000392770 NUDT16Q96DE0 195 aaKnown RBP20.42■□□□□ 0.86
SCN3B-202ENST00000392770 AIMP1Q12904 312 aaKnown RBP20.42■□□□□ 0.86
SCN3B-202ENST00000392770 TWISTNBQ3B726 338 aaPredicted RBP20.42■□□□□ 0.86
SCN3B-202ENST00000392770 SCAF11Q99590 1463 aaKnown RBP20.42■□□□□ 0.86
SCN3B-202ENST00000392770 WDR7Q9Y4E6 1490 aa20.41■□□□□ 0.86
SCN3B-202ENST00000392770 PLEKHO1Q53GL0 409 aaPredicted RBP20.41■□□□□ 0.86
SCN3B-202ENST00000392770 SYAP1Q96A49 352 aaPredicted RBP20.41■□□□□ 0.86
SCN3B-202ENST00000392770 FOXD4L5Q5VV16 416 aaPredicted RBP20.41■□□□□ 0.86
SCN3B-202ENST00000392770 FOXD4L4Q8WXT5 416 aaPredicted RBP20.41■□□□□ 0.86
SCN3B-202ENST00000392770 WDR63Q8IWG1 891 aa20.41■□□□□ 0.86
SCN3B-202ENST00000392770 RIC3Q7Z5B4 369 aa20.4■□□□□ 0.86
SCN3B-202ENST00000392770 NOB1Q9ULX3 412 aaKnown RBP20.4■□□□□ 0.86
SCN3B-202ENST00000392770 CCDC30Q5VVM6 783 aa20.4■□□□□ 0.86
SCN3B-202ENST00000392770 MEX3CQ5U5Q3 659 aaKnown RBP20.4■□□□□ 0.86
SCN3B-202ENST00000392770 G3BP1Q13283 466 aaKnown RBP eCLIP20.39■□□□□ 0.85
SCN3B-202ENST00000392770 G3V3G9 751 aa20.39■□□□□ 0.85
SCN3B-202ENST00000392770 DCAF8Q5TAQ9 597 aa20.39■□□□□ 0.85
SCN3B-202ENST00000392770 TOMM22Q9NS69 142 aa20.39■□□□□ 0.85
SCN3B-202ENST00000392770 MSNP26038 577 aaKnown RBP20.39■□□□□ 0.85
SCN3B-202ENST00000392770 IDI1Q13907 227 aa20.38■□□□□ 0.85
SCN3B-202ENST00000392770 NRDCO43847 1150 aa20.38■□□□□ 0.85
SCN3B-202ENST00000392770 REC8O95072 547 aa20.38■□□□□ 0.85
SCN3B-202ENST00000392770 UBTFL1P0CB47 393 aaPredicted RBP20.37■□□□□ 0.85
SCN3B-202ENST00000392770 FANCIQ9NVI1 1328 aa20.37■□□□□ 0.85
SCN3B-202ENST00000392770 CSPP1Q1MSJ5 1256 aa20.36■□□□□ 0.85
SCN3B-202ENST00000392770 RUFY2Q8WXA3 655 aa20.36■□□□□ 0.85
SCN3B-202ENST00000392770 DISP3Q9P2K9 1392 aa20.36■□□□□ 0.85
SCN3B-202ENST00000392770 GOLGA6L3A6NEY3 463 aa20.35■□□□□ 0.85
SCN3B-202ENST00000392770 PDE3AQ14432 1141 aa20.35■□□□□ 0.85
SCN3B-202ENST00000392770 HSP90AB4PQ58FF6 505 aa20.34■□□□□ 0.85
SCN3B-202ENST00000392770 DISP1Q96F81 1524 aa20.34■□□□□ 0.85
SCN3B-202ENST00000392770 CCDC61Q9Y6R9 512 aa20.34■□□□□ 0.85
SCN3B-202ENST00000392770 INTS3Q68E01 1043 aaKnown RBP20.34■□□□□ 0.85
SCN3B-202ENST00000392770 C1orf115Q9H7X2 142 aa20.33■□□□□ 0.85
SCN3B-202ENST00000392770 DDX11L8A8MPP1 907 aa20.33■□□□□ 0.84
SCN3B-202ENST00000392770 TRAPPC8Q9Y2L5 1435 aa20.32■□□□□ 0.84
SCN3B-202ENST00000392770 FCHSD2O94868 740 aa20.32■□□□□ 0.84
SCN3B-202ENST00000392770 ANO2Q9NQ90 1003 aa20.32■□□□□ 0.84
SCN3B-202ENST00000392770 NINLQ9Y2I6 1382 aa20.32■□□□□ 0.84
SCN3B-202ENST00000392770 ZNF518AQ6AHZ1 1483 aa20.32■□□□□ 0.84
SCN3B-202ENST00000392770 TATP17735 454 aaPredicted RBP20.31■□□□□ 0.84
SCN3B-202ENST00000392770 C14orf93Q9H972 538 aaKnown RBP20.31■□□□□ 0.84
SCN3B-202ENST00000392770 NUP160Q12769 1436 aa20.31■□□□□ 0.84
SCN3B-202ENST00000392770 A2MP01023 1474 aa20.31■□□□□ 0.84
SCN3B-202ENST00000392770 USP35Q9P2H5 1018 aa20.31■□□□□ 0.84
SCN3B-202ENST00000392770 RALGAPBQ86X10 1494 aa20.31■□□□□ 0.84
SCN3B-202ENST00000392770 WWC1Q8IX03 1113 aa20.31■□□□□ 0.84
SCN3B-202ENST00000392770 PPP6R1Q9UPN7 881 aa20.31■□□□□ 0.84
SCN3B-202ENST00000392770 CT47B1P0C2W7 299 aaPredicted RBP20.3■□□□□ 0.84
SCN3B-202ENST00000392770 LRRFIP1Q32MZ4 808 aaKnown RBP20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms