RNA–Protein interactions for RNA: ENST00000380833.8

CLCN4-202, Transcript of chloride voltage-gated channel 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN4, Length 6,750 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-202ENST00000380833 CCDC34Q96HJ3 373 aa13.01□□□□□ -0.33
CLCN4-202ENST00000380833 TERF2IPQ9NYB0 399 aa13.01□□□□□ -0.33
CLCN4-202ENST00000380833 GOLGA3Q08378 1498 aa13.01□□□□□ -0.33
CLCN4-202ENST00000380833 C9orf78Q9NZ63 289 aaPredicted RBP13□□□□□ -0.33
CLCN4-202ENST00000380833 NUP155O75694 1391 aa13□□□□□ -0.33
CLCN4-202ENST00000380833 GOLGA6L10A6NI86 522 aa13□□□□□ -0.33
CLCN4-202ENST00000380833 ANKRD45Q5TZF3 282 aa13□□□□□ -0.33
CLCN4-202ENST00000380833 SKIDA1Q1XH10 827 aa13□□□□□ -0.33
CLCN4-202ENST00000380833 SYNE3Q6ZMZ3 975 aa13□□□□□ -0.33
CLCN4-202ENST00000380833 SETSIPP0DME0 302 aa12.99□□□□□ -0.33
CLCN4-202ENST00000380833 SARNPP82979 210 aaKnown RBP12.99□□□□□ -0.33
CLCN4-202ENST00000380833 CTR9Q6PD62 1173 aa12.99□□□□□ -0.33
CLCN4-202ENST00000380833 GTPBP4Q9BZE4 634 aaKnown RBP12.99□□□□□ -0.33
CLCN4-202ENST00000380833 TSR1Q2NL82 804 aaKnown RBP12.99□□□□□ -0.33
CLCN4-202ENST00000380833 STRN4Q9NRL3 753 aa12.98□□□□□ -0.33
CLCN4-202ENST00000380833 BECN2A8MW95 431 aa12.98□□□□□ -0.33
CLCN4-202ENST00000380833 KIF27Q86VH2 1401 aa12.98□□□□□ -0.33
CLCN4-202ENST00000380833 TICAM2Q86XR7 235 aa12.98□□□□□ -0.33
CLCN4-202ENST00000380833 NAP1L1P55209 391 aaKnown RBP12.98□□□□□ -0.33
CLCN4-202ENST00000380833 FAM107BQ9H098 131 aa12.97□□□□□ -0.33
CLCN4-202ENST00000380833 PMFBP1Q8TBY8 1022 aa12.97□□□□□ -0.33
CLCN4-202ENST00000380833 ANO2Q9NQ90 1003 aa12.97□□□□□ -0.33
CLCN4-202ENST00000380833 WDR70Q9NW82 654 aa12.97□□□□□ -0.33
CLCN4-202ENST00000380833 CHMP4BP1P59074 171 aa12.97□□□□□ -0.33
CLCN4-202ENST00000380833 BAZ1AQ9NRL2 1556 aaPredicted RBP12.97□□□□□ -0.33
CLCN4-202ENST00000380833 ATP2B2Q01814 1243 aa12.96□□□□□ -0.33
CLCN4-202ENST00000380833 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.96□□□□□ -0.33
CLCN4-202ENST00000380833 NEUROD6Q96NK8 337 aa12.96□□□□□ -0.33
CLCN4-202ENST00000380833 ST18O60284 1047 aa12.96□□□□□ -0.33
CLCN4-202ENST00000380833 CENPHQ9H3R5 247 aa12.96□□□□□ -0.33
CLCN4-202ENST00000380833 CAVIN1Q6NZI2 390 aaKnown RBP12.96□□□□□ -0.34
CLCN4-202ENST00000380833 COG3Q96JB2 828 aa12.96□□□□□ -0.34
CLCN4-202ENST00000380833 TPM1P09493 284 aa12.95□□□□□ -0.34
CLCN4-202ENST00000380833 MPHOSPH10O00566 681 aaKnown RBP12.95□□□□□ -0.34
CLCN4-202ENST00000380833 TRERF1Q96PN7 1200 aa12.95□□□□□ -0.34
CLCN4-202ENST00000380833 EIF3JO75822 258 aaKnown RBP12.95□□□□□ -0.34
CLCN4-202ENST00000380833 SASS6Q6UVJ0 657 aa12.95□□□□□ -0.34
CLCN4-202ENST00000380833 MYCNP04198 464 aaPredicted RBP12.95□□□□□ -0.34
CLCN4-202ENST00000380833 MRVI1Q9Y6F6 885 aa12.95□□□□□ -0.34
CLCN4-202ENST00000380833 WRNQ14191 1432 aaPredicted RBP eCLIP12.94□□□□□ -0.34
CLCN4-202ENST00000380833 TRIM29Q14134 588 aa12.94□□□□□ -0.34
CLCN4-202ENST00000380833 RBM42Q9BTD8 480 aaKnown RBP12.94□□□□□ -0.34
CLCN4-202ENST00000380833 SF3B2Q13435 895 aaKnown RBP12.94□□□□□ -0.34
CLCN4-202ENST00000380833 SMAP1Q8IYB5 467 aaPredicted RBP12.94□□□□□ -0.34
CLCN4-202ENST00000380833 CPSF2Q9P2I0 782 aaKnown RBP12.94□□□□□ -0.34
CLCN4-202ENST00000380833 PPM1FP49593 454 aaPredicted RBP12.94□□□□□ -0.34
CLCN4-202ENST00000380833 TTLL5Q6EMB2 1281 aa12.93□□□□□ -0.34
CLCN4-202ENST00000380833 CENPJQ9HC77 1338 aaPredicted RBP12.93□□□□□ -0.34
CLCN4-202ENST00000380833 EFCAB2Q5VUJ9 269 aa12.93□□□□□ -0.34
CLCN4-202ENST00000380833 CCDC91Q7Z6B0 441 aa12.93□□□□□ -0.34
CLCN4-202ENST00000380833 NLRP2Q9NX02 1062 aa12.93□□□□□ -0.34
CLCN4-202ENST00000380833 ATP6V1DQ9Y5K8 247 aa12.93□□□□□ -0.34
CLCN4-202ENST00000380833 TRAK2O60296 914 aa12.93□□□□□ -0.34
CLCN4-202ENST00000380833 NF2P35240 595 aa12.93□□□□□ -0.34
CLCN4-202ENST00000380833 ODF2Q5BJF6 829 aa12.93□□□□□ -0.34
CLCN4-202ENST00000380833 RNF20Q5VTR2 975 aa12.93□□□□□ -0.34
CLCN4-202ENST00000380833 ZNF622Q969S3 477 aaKnown RBP eCLIP12.92□□□□□ -0.34
CLCN4-202ENST00000380833 NBPF1Q3BBV0 1214 aa12.92□□□□□ -0.34
CLCN4-202ENST00000380833 CCDC112Q8NEF3 446 aa12.92□□□□□ -0.34
CLCN4-202ENST00000380833 HMOX1P09601 288 aa12.92□□□□□ -0.34
CLCN4-202ENST00000380833 ATF3P18847 181 aa12.92□□□□□ -0.34
CLCN4-202ENST00000380833 CPLX1O14810 134 aa12.92□□□□□ -0.34
CLCN4-202ENST00000380833 GRPEL1Q9HAV7 217 aa12.92□□□□□ -0.34
CLCN4-202ENST00000380833 CUX2O14529 1486 aa12.91□□□□□ -0.34
CLCN4-202ENST00000380833 WASHC4Q2M389 1173 aa12.91□□□□□ -0.34
CLCN4-202ENST00000380833 IFIT2P09913 472 aaKnown RBP12.91□□□□□ -0.34
CLCN4-202ENST00000380833 LIG1P18858 919 aa12.91□□□□□ -0.34
CLCN4-202ENST00000380833 DNAAF4Q8WXU2 420 aa12.91□□□□□ -0.34
CLCN4-202ENST00000380833 BCCIPQ9P287 314 aaKnown RBP eCLIP12.91□□□□□ -0.34
CLCN4-202ENST00000380833 CENPQQ7L2Z9 268 aaPredicted RBP12.9□□□□□ -0.34
CLCN4-202ENST00000380833 KIAA1328Q86T90 577 aa12.9□□□□□ -0.34
CLCN4-202ENST00000380833 BANK1Q8NDB2 785 aa12.9□□□□□ -0.34
CLCN4-202ENST00000380833 MPHOSPH9Q99550 1183 aa12.9□□□□□ -0.34
CLCN4-202ENST00000380833 HDAC5Q9UQL6 1122 aa12.9□□□□□ -0.34
CLCN4-202ENST00000380833 VGLL3A8MV65 326 aa12.9□□□□□ -0.34
CLCN4-202ENST00000380833 CT47B1P0C2W7 299 aaPredicted RBP12.9□□□□□ -0.34
CLCN4-202ENST00000380833 ATP2B1P20020 1258 aa12.9□□□□□ -0.34
CLCN4-202ENST00000380833 ZSCAN30Q86W11 494 aa12.9□□□□□ -0.34
CLCN4-202ENST00000380833 CCP110O43303 1012 aa12.9□□□□□ -0.34
CLCN4-202ENST00000380833 RBM5P52756 815 aaKnown RBP eCLIP12.9□□□□□ -0.34
CLCN4-202ENST00000380833 SUDS3Q9H7L9 328 aaPredicted RBP12.9□□□□□ -0.34
CLCN4-202ENST00000380833 GOLGA6L10A0A0M3HER8 536 aa12.9□□□□□ -0.34
CLCN4-202ENST00000380833 ERICH2A1L162 156 aa12.89□□□□□ -0.35
CLCN4-202ENST00000380833 DYNC1I1O14576 645 aa12.89□□□□□ -0.35
CLCN4-202ENST00000380833 MNAT1P51948 309 aa12.89□□□□□ -0.35
CLCN4-202ENST00000380833 ENOX2Q16206 610 aaKnown RBP12.89□□□□□ -0.35
CLCN4-202ENST00000380833 MYO6Q9UM54 1294 aa12.89□□□□□ -0.35
CLCN4-202ENST00000380833 CEP164Q9UPV0 1460 aa12.89□□□□□ -0.35
CLCN4-202ENST00000380833 GOLIM4O00461 696 aa12.89□□□□□ -0.35
CLCN4-202ENST00000380833 TDRD9Q8NDG6 1382 aaKnown RBP12.88□□□□□ -0.35
CLCN4-202ENST00000380833 ARID4AP29374 1257 aaPredicted RBP12.88□□□□□ -0.35
CLCN4-202ENST00000380833 MYO15BQ96JP2 1530 aa12.88□□□□□ -0.35
CLCN4-202ENST00000380833 PPP4R3BQ5MIZ7 849 aa12.88□□□□□ -0.35
CLCN4-202ENST00000380833 RIC3Q7Z5B4 369 aa12.88□□□□□ -0.35
CLCN4-202ENST00000380833 FKBP5Q13451 457 aaPredicted RBP12.88□□□□□ -0.35
CLCN4-202ENST00000380833 KANK4Q5T7N3 995 aaPredicted RBP12.87□□□□□ -0.35
CLCN4-202ENST00000380833 HSP90AB2PQ58FF8 381 aa12.87□□□□□ -0.35
CLCN4-202ENST00000380833 ERLIN1O75477 346 aa12.87□□□□□ -0.35
CLCN4-202ENST00000380833 RALBP1Q15311 655 aa12.87□□□□□ -0.35
CLCN4-202ENST00000380833 CARMIL1Q5VZK9 1371 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms