RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 DIP2CQ9Y2E4 1556 aa25.55■■□□□ 1.68
SHROOM1-202ENST00000378676 NEXMIFQ5QGS0 1516 aa25.53■■□□□ 1.68
SHROOM1-202ENST00000378676 SLC12A5Q9H2X9 1139 aa25.52■■□□□ 1.68
SHROOM1-202ENST00000378676 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.52■■□□□ 1.68
SHROOM1-202ENST00000378676 MYO5BQ9ULV0 1848 aa25.51■■□□□ 1.67
SHROOM1-202ENST00000378676 TULP4Q9NRJ4 1543 aa25.5■■□□□ 1.67
SHROOM1-202ENST00000378676 DIP2BQ9P265 1576 aa25.5■■□□□ 1.67
SHROOM1-202ENST00000378676 RICTORQ6R327 1708 aa25.49■■□□□ 1.67
SHROOM1-202ENST00000378676 CENPQQ7L2Z9 268 aaPredicted RBP25.49■■□□□ 1.67
SHROOM1-202ENST00000378676 E9PSI1 815 aa25.48■■□□□ 1.67
SHROOM1-202ENST00000378676 BCAR3O75815 825 aa25.48■■□□□ 1.67
SHROOM1-202ENST00000378676 RPGRIP1LQ68CZ1 1315 aa25.48■■□□□ 1.67
SHROOM1-202ENST00000378676 FAM69CQ0P6D2 419 aa25.47■■□□□ 1.67
SHROOM1-202ENST00000378676 MORC1Q86VD1 984 aa25.47■■□□□ 1.67
SHROOM1-202ENST00000378676 RAPGEF3O95398 923 aa25.47■■□□□ 1.67
SHROOM1-202ENST00000378676 TNNT2P45379 298 aaPredicted RBP25.47■■□□□ 1.67
SHROOM1-202ENST00000378676 NUTM2DQ5VT03 806 aaPredicted RBP25.47■■□□□ 1.67
SHROOM1-202ENST00000378676 IQSEC2Q5JU85 1478 aa25.47■■□□□ 1.67
SHROOM1-202ENST00000378676 DEKP35659 375 aaKnown RBP25.42■■□□□ 1.66
SHROOM1-202ENST00000378676 WWC1Q8IX03 1113 aa25.42■■□□□ 1.66
SHROOM1-202ENST00000378676 NGEFQ8N5V2 710 aa25.42■■□□□ 1.66
SHROOM1-202ENST00000378676 PREX1Q8TCU6 1659 aa25.38■■□□□ 1.65
SHROOM1-202ENST00000378676 VIRMAQ69YN4 1812 aaKnown RBP25.38■■□□□ 1.65
SHROOM1-202ENST00000378676 RRP7AQ9Y3A4 280 aaKnown RBP25.38■■□□□ 1.65
SHROOM1-202ENST00000378676 ARHGAP31Q2M1Z3 1444 aa25.37■■□□□ 1.65
SHROOM1-202ENST00000378676 CGNL1Q0VF96 1302 aa25.36■■□□□ 1.65
SHROOM1-202ENST00000378676 ANKRD36BQ8N2N9 1353 aa25.36■■□□□ 1.65
SHROOM1-202ENST00000378676 RUNDC1Q96C34 613 aa25.36■■□□□ 1.65
SHROOM1-202ENST00000378676 YEATS2Q9ULM3 1422 aa25.36■■□□□ 1.65
SHROOM1-202ENST00000378676 NEUROD2Q15784 382 aa25.36■■□□□ 1.65
SHROOM1-202ENST00000378676 EVC2Q86UK5 1308 aa25.35■■□□□ 1.65
SHROOM1-202ENST00000378676 TSPOAP1O95153 1857 aa25.35■■□□□ 1.65
SHROOM1-202ENST00000378676 MTHFSP49914 203 aa25.35■■□□□ 1.65
SHROOM1-202ENST00000378676 VGFO15240 615 aaPredicted RBP25.34■■□□□ 1.65
SHROOM1-202ENST00000378676 TMEM131LA2VDJ0 1609 aa25.34■■□□□ 1.65
SHROOM1-202ENST00000378676 TCP11L2Q8N4U5 519 aa25.33■■□□□ 1.65
SHROOM1-202ENST00000378676 C8orf34Q49A92 452 aa25.33■■□□□ 1.65
SHROOM1-202ENST00000378676 IDI1Q13907 227 aa25.32■■□□□ 1.64
SHROOM1-202ENST00000378676 CABP2Q9NPB3 220 aa25.32■■□□□ 1.64
SHROOM1-202ENST00000378676 LAS1LQ9Y4W2 734 aaKnown RBP25.32■■□□□ 1.64
SHROOM1-202ENST00000378676 PHF23Q9BUL5 403 aaPredicted RBP25.31■■□□□ 1.64
SHROOM1-202ENST00000378676 SENP3Q9H4L4 574 aaPredicted RBP25.31■■□□□ 1.64
SHROOM1-202ENST00000378676 ADGRB2O60241 1585 aa25.31■■□□□ 1.64
SHROOM1-202ENST00000378676 KIF13AQ9H1H9 1805 aa25.31■■□□□ 1.64
SHROOM1-202ENST00000378676 RGS3P49796 1198 aa25.31■■□□□ 1.64
SHROOM1-202ENST00000378676 SAFB2Q14151 953 aaKnown RBP eCLIP25.31■■□□□ 1.64
SHROOM1-202ENST00000378676 ANKRD26Q9UPS8 1709 aa25.3■■□□□ 1.64
SHROOM1-202ENST00000378676 FAM161AQ3B820 660 aa25.3■■□□□ 1.64
SHROOM1-202ENST00000378676 PUS7Q96PZ0 661 aaKnown RBP25.3■■□□□ 1.64
SHROOM1-202ENST00000378676 NINLQ9Y2I6 1382 aa25.3■■□□□ 1.64
SHROOM1-202ENST00000378676 NSD2O96028 1365 aa25.29■■□□□ 1.64
SHROOM1-202ENST00000378676 RTL5Q5HYW3 569 aaPredicted RBP25.29■■□□□ 1.64
SHROOM1-202ENST00000378676 ZFYVE9O95405 1425 aa25.29■■□□□ 1.64
SHROOM1-202ENST00000378676 PDE3AQ14432 1141 aa25.29■■□□□ 1.64
SHROOM1-202ENST00000378676 PANK1Q8TE04 598 aa25.29■■□□□ 1.64
SHROOM1-202ENST00000378676 IGHDP01880 384 aa25.28■■□□□ 1.64
SHROOM1-202ENST00000378676 CLTCQ00610 1675 aaKnown RBP25.28■■□□□ 1.64
SHROOM1-202ENST00000378676 PTPRMP28827 1452 aa25.28■■□□□ 1.64
SHROOM1-202ENST00000378676 CFAP53Q96M91 514 aa25.27■■□□□ 1.64
SHROOM1-202ENST00000378676 A0A1W2PP64 1363 aa25.27■■□□□ 1.64
SHROOM1-202ENST00000378676 COG6Q9Y2V7 657 aa25.26■■□□□ 1.63
SHROOM1-202ENST00000378676 CANXP27824 592 aaKnown RBP25.26■■□□□ 1.63
SHROOM1-202ENST00000378676 DDRGK1Q96HY6 314 aa25.26■■□□□ 1.63
SHROOM1-202ENST00000378676 STK26Q9P289 416 aa25.25■■□□□ 1.63
SHROOM1-202ENST00000378676 RARSP54136 660 aaKnown RBP25.24■■□□□ 1.63
SHROOM1-202ENST00000378676 ABCC11Q96J66 1382 aa25.24■■□□□ 1.63
SHROOM1-202ENST00000378676 WDR63Q8IWG1 891 aa25.23■■□□□ 1.63
SHROOM1-202ENST00000378676 FRAT1Q92837 279 aaPredicted RBP25.23■■□□□ 1.63
SHROOM1-202ENST00000378676 CLUAP1Q96AJ1 413 aa25.23■■□□□ 1.63
SHROOM1-202ENST00000378676 TNNQ9UQP3 1299 aa25.22■■□□□ 1.63
SHROOM1-202ENST00000378676 COL3A1P02461 1466 aaPredicted RBP25.21■■□□□ 1.63
SHROOM1-202ENST00000378676 CCDC27Q2M243 656 aa25.21■■□□□ 1.63
SHROOM1-202ENST00000378676 SLC52A1Q9NWF4 448 aa25.21■■□□□ 1.63
SHROOM1-202ENST00000378676 U2AF1L5P0DN76 240 aaPredicted RBP25.2■■□□□ 1.62
SHROOM1-202ENST00000378676 U2AF1Q01081 240 aaKnown RBP eCLIP25.2■■□□□ 1.62
SHROOM1-202ENST00000378676 CD163L1Q9NR16 1453 aa25.2■■□□□ 1.62
SHROOM1-202ENST00000378676 SRPK2P78362 688 aaKnown RBP25.19■■□□□ 1.62
SHROOM1-202ENST00000378676 KIF20BQ96Q89 1820 aa25.19■■□□□ 1.62
SHROOM1-202ENST00000378676 BCL2L13Q9BXK5 485 aa25.18■■□□□ 1.62
SHROOM1-202ENST00000378676 RLBP1P12271 317 aa25.18■■□□□ 1.62
SHROOM1-202ENST00000378676 YTHDC2Q9H6S0 1430 aaKnown RBP25.17■■□□□ 1.62
SHROOM1-202ENST00000378676 MINK1Q8N4C8 1332 aaPredicted RBP25.17■■□□□ 1.62
SHROOM1-202ENST00000378676 NEFMP07197 916 aa25.17■■□□□ 1.62
SHROOM1-202ENST00000378676 SLC4A3P48751 1232 aa25.17■■□□□ 1.62
SHROOM1-202ENST00000378676 ALKQ9UM73 1620 aa25.17■■□□□ 1.62
SHROOM1-202ENST00000378676 GGNBP2Q9H3C7 697 aa25.17■■□□□ 1.62
SHROOM1-202ENST00000378676 NLRP1Q9C000 1473 aa25.17■■□□□ 1.62
SHROOM1-202ENST00000378676 PRAM1Q96QH2 718 aa25.15■■□□□ 1.62
SHROOM1-202ENST00000378676 FBXO31Q5XUX0 539 aaPredicted RBP25.13■■□□□ 1.61
SHROOM1-202ENST00000378676 PPM1GO15355 546 aaPredicted RBP25.13■■□□□ 1.61
SHROOM1-202ENST00000378676 ATAD2Q6PL18 1390 aa25.13■■□□□ 1.61
SHROOM1-202ENST00000378676 NCBP3Q53F19 620 aaKnown RBP25.11■■□□□ 1.61
SHROOM1-202ENST00000378676 MYH16Q9H6N6 1097 aa25.11■■□□□ 1.61
SHROOM1-202ENST00000378676 MED14O60244 1454 aa25.11■■□□□ 1.61
SHROOM1-202ENST00000378676 PRKCSHP14314 528 aaPredicted RBP25.11■■□□□ 1.61
SHROOM1-202ENST00000378676 PCDHB15Q9Y5E8 787 aa25.1■■□□□ 1.61
SHROOM1-202ENST00000378676 PLEKHF1Q96S99 279 aa25.1■■□□□ 1.61
SHROOM1-202ENST00000378676 SETD1AO15047 1707 aaKnown RBP25.09■■□□□ 1.61
SHROOM1-202ENST00000378676 U2SURPO15042 1029 aaKnown RBP25.09■■□□□ 1.61
SHROOM1-202ENST00000378676 FYB1O15117 783 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms