RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 SPECC1LQ69YQ0 1117 aa10.43□□□□□ -0.74
LIG3-202ENST00000378526 WWC1Q8IX03 1113 aa10.42□□□□□ -0.74
LIG3-202ENST00000378526 ZFYP08048 801 aaPredicted RBP10.42□□□□□ -0.74
LIG3-202ENST00000378526 TMF1P82094 1093 aa10.42□□□□□ -0.74
LIG3-202ENST00000378526 VPS53Q5VIR6 699 aa10.42□□□□□ -0.74
LIG3-202ENST00000378526 UBXN4Q92575 508 aa10.42□□□□□ -0.74
LIG3-202ENST00000378526 SH2D4BQ5SQS7 431 aa10.42□□□□□ -0.74
LIG3-202ENST00000378526 ZBTB17Q13105 803 aa10.42□□□□□ -0.74
LIG3-202ENST00000378526 BRPF3Q9ULD4 1205 aa10.42□□□□□ -0.74
LIG3-202ENST00000378526 DNAJC21Q5F1R6 531 aaKnown RBP10.41□□□□□ -0.74
LIG3-202ENST00000378526 NOL8Q76FK4 1167 aaKnown RBP10.41□□□□□ -0.74
LIG3-202ENST00000378526 SH3BGRP55822 239 aaPredicted RBP10.41□□□□□ -0.74
LIG3-202ENST00000378526 BMS1Q14692 1282 aaKnown RBP10.41□□□□□ -0.74
LIG3-202ENST00000378526 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.41□□□□□ -0.74
LIG3-202ENST00000378526 POTEB2H3BUK9 544 aa10.41□□□□□ -0.74
LIG3-202ENST00000378526 APBB1O00213 710 aa10.41□□□□□ -0.74
LIG3-202ENST00000378526 GOLIM4O00461 696 aa10.41□□□□□ -0.74
LIG3-202ENST00000378526 IL27Q8NEV9 243 aa10.41□□□□□ -0.74
LIG3-202ENST00000378526 CEP83Q9Y592 693 aa10.41□□□□□ -0.74
LIG3-202ENST00000378526 CCDC6Q16204 474 aa10.41□□□□□ -0.74
LIG3-202ENST00000378526 A0A1B0GUA9 196 aa10.4□□□□□ -0.74
LIG3-202ENST00000378526 NOL10Q9BSC4 688 aaKnown RBP10.4□□□□□ -0.74
LIG3-202ENST00000378526 NAP1L3Q99457 506 aaPredicted RBP10.4□□□□□ -0.74
LIG3-202ENST00000378526 ZSCAN30Q86W11 494 aa10.4□□□□□ -0.74
LIG3-202ENST00000378526 GCOM1H8Y6P7 765 aaPredicted RBP10.4□□□□□ -0.74
LIG3-202ENST00000378526 MYZAPP0CAP1 466 aa10.4□□□□□ -0.74
LIG3-202ENST00000378526 ZFYVE27Q5T4F4 411 aa10.4□□□□□ -0.74
LIG3-202ENST00000378526 CBFA2T2O43439 604 aa10.4□□□□□ -0.75
LIG3-202ENST00000378526 CCDC192P0DO97 292 aa10.4□□□□□ -0.75
LIG3-202ENST00000378526 HSPA4P34932 840 aa10.4□□□□□ -0.75
LIG3-202ENST00000378526 FILIP1Q7Z7B0 1213 aa10.4□□□□□ -0.75
LIG3-202ENST00000378526 RSRC1Q96IZ7 334 aaKnown RBP10.4□□□□□ -0.75
LIG3-202ENST00000378526 KINO60870 393 aaKnown RBP10.4□□□□□ -0.75
LIG3-202ENST00000378526 SMC2O95347 1197 aa10.39□□□□□ -0.75
LIG3-202ENST00000378526 TTC31Q49AM3 519 aaPredicted RBP10.39□□□□□ -0.75
LIG3-202ENST00000378526 CBX1P83916 185 aa10.39□□□□□ -0.75
LIG3-202ENST00000378526 AAMPQ13685 434 aa10.39□□□□□ -0.75
LIG3-202ENST00000378526 MAGEC2Q9UBF1 373 aaPredicted RBP10.39□□□□□ -0.75
LIG3-202ENST00000378526 CCDC148Q8NFR7 591 aa10.39□□□□□ -0.75
LIG3-202ENST00000378526 SMC3Q9UQE7 1217 aa10.39□□□□□ -0.75
LIG3-202ENST00000378526 SAFBQ15424 915 aaKnown RBP eCLIP10.39□□□□□ -0.75
LIG3-202ENST00000378526 GRPEL1Q9HAV7 217 aa10.38□□□□□ -0.75
LIG3-202ENST00000378526 CENPJQ9HC77 1338 aaPredicted RBP10.38□□□□□ -0.75
LIG3-202ENST00000378526 ZHX1Q9UKY1 873 aaPredicted RBP10.38□□□□□ -0.75
LIG3-202ENST00000378526 NOL3O60936 208 aaKnown RBP10.38□□□□□ -0.75
LIG3-202ENST00000378526 MCM2P49736 904 aa10.38□□□□□ -0.75
LIG3-202ENST00000378526 SYCP1Q15431 976 aa10.38□□□□□ -0.75
LIG3-202ENST00000378526 SPAG9O60271 1321 aaKnown RBP10.38□□□□□ -0.75
LIG3-202ENST00000378526 ZMAT2Q96NC0 199 aaKnown RBP10.38□□□□□ -0.75
LIG3-202ENST00000378526 SMC4Q9NTJ3 1288 aa10.38□□□□□ -0.75
LIG3-202ENST00000378526 DACH1Q9UI36 760 aa10.38□□□□□ -0.75
LIG3-202ENST00000378526 PDCP20941 246 aa10.38□□□□□ -0.75
LIG3-202ENST00000378526 KIF18AQ8NI77 898 aa10.37□□□□□ -0.75
LIG3-202ENST00000378526 RNF187Q5TA31 235 aaPredicted RBP10.37□□□□□ -0.75
LIG3-202ENST00000378526 P3H3Q8IVL6 736 aa10.37□□□□□ -0.75
LIG3-202ENST00000378526 ZWINTO95229 277 aa10.37□□□□□ -0.75
LIG3-202ENST00000378526 PPFIBP1Q86W92 1011 aa10.37□□□□□ -0.75
LIG3-202ENST00000378526 SDF4Q9BRK5 362 aa10.37□□□□□ -0.75
LIG3-202ENST00000378526 CPLX1O14810 134 aa10.37□□□□□ -0.75
LIG3-202ENST00000378526 PRDM10Q9NQV6 1147 aa10.37□□□□□ -0.75
LIG3-202ENST00000378526 CHIC2Q9UKJ5 165 aa10.37□□□□□ -0.75
LIG3-202ENST00000378526 FAM193AP78312 1265 aa10.36□□□□□ -0.75
LIG3-202ENST00000378526 GBP6Q6ZN66 633 aa10.36□□□□□ -0.75
LIG3-202ENST00000378526 FOXD4L6Q3SYB3 417 aaPredicted RBP10.36□□□□□ -0.75
LIG3-202ENST00000378526 FOXD4L3Q6VB84 417 aaPredicted RBP10.36□□□□□ -0.75
LIG3-202ENST00000378526 PPP1R15AO75807 674 aaPredicted RBP10.36□□□□□ -0.75
LIG3-202ENST00000378526 MCM5P33992 734 aa10.36□□□□□ -0.75
LIG3-202ENST00000378526 FMNL2Q96PY5 1086 aa10.36□□□□□ -0.75
LIG3-202ENST00000378526 TRIM34Q9BYJ4 488 aa10.36□□□□□ -0.75
LIG3-202ENST00000378526 ROCK1Q13464 1354 aa10.36□□□□□ -0.75
LIG3-202ENST00000378526 KIF5BP33176 963 aa10.36□□□□□ -0.75
LIG3-202ENST00000378526 PPP1R12BO60237 982 aaPredicted RBP10.36□□□□□ -0.75
LIG3-202ENST00000378526 PRPF40AO75400 957 aaKnown RBP10.36□□□□□ -0.75
LIG3-202ENST00000378526 ANKS4BQ8N8V4 417 aa10.35□□□□□ -0.75
LIG3-202ENST00000378526 PAXIP1Q6ZW49 1069 aaPredicted RBP10.35□□□□□ -0.75
LIG3-202ENST00000378526 BRMS1Q9HCU9 246 aa10.35□□□□□ -0.75
LIG3-202ENST00000378526 LRRFIP2Q9Y608 721 aaKnown RBP10.35□□□□□ -0.75
LIG3-202ENST00000378526 HSPA5P11021 654 aaKnown RBP10.35□□□□□ -0.75
LIG3-202ENST00000378526 INTS3Q68E01 1043 aaKnown RBP10.35□□□□□ -0.75
LIG3-202ENST00000378526 CLIP1P30622 1438 aa10.34□□□□□ -0.75
LIG3-202ENST00000378526 JAKMIP3Q5VZ66 844 aa10.34□□□□□ -0.75
LIG3-202ENST00000378526 IMMTQ16891 758 aaKnown RBP10.34□□□□□ -0.75
LIG3-202ENST00000378526 ROCK2O75116 1388 aaKnown RBP10.34□□□□□ -0.75
LIG3-202ENST00000378526 USH1CQ9Y6N9 552 aa10.34□□□□□ -0.75
LIG3-202ENST00000378526 KRT222Q8N1A0 295 aa10.33□□□□□ -0.76
LIG3-202ENST00000378526 CCDC158Q5M9N0 1113 aa10.33□□□□□ -0.76
LIG3-202ENST00000378526 CCDC43Q96MW1 224 aaKnown RBP10.33□□□□□ -0.76
LIG3-202ENST00000378526 AMOTL1Q8IY63 956 aa10.33□□□□□ -0.76
LIG3-202ENST00000378526 NUP133Q8WUM0 1156 aa10.33□□□□□ -0.76
LIG3-202ENST00000378526 PRIMPOLQ96LW4 560 aa10.33□□□□□ -0.76
LIG3-202ENST00000378526 CCDC160A6NGH7 325 aa10.33□□□□□ -0.76
LIG3-202ENST00000378526 XBP1P17861 261 aa10.33□□□□□ -0.76
LIG3-202ENST00000378526 GTF2F1P35269 517 aaKnown RBP eCLIP10.33□□□□□ -0.76
LIG3-202ENST00000378526 SLC4A3P48751 1232 aa10.33□□□□□ -0.76
LIG3-202ENST00000378526 CCDC174Q6PII3 467 aa10.33□□□□□ -0.76
LIG3-202ENST00000378526 FMNL3Q8IVF7 1028 aa10.33□□□□□ -0.76
LIG3-202ENST00000378526 ZSCAN12O43309 604 aa10.33□□□□□ -0.76
LIG3-202ENST00000378526 CWC22Q9HCG8 908 aaKnown RBP10.33□□□□□ -0.76
LIG3-202ENST00000378526 PPP4R3BQ5MIZ7 849 aa10.33□□□□□ -0.76
LIG3-202ENST00000378526 MORC1Q86VD1 984 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 186.8 ms