RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 HSP90AB1P08238 724 aaKnown RBP18.22■□□□□ 0.51
TCOF1-202ENST00000377797 RRS1Q15050 365 aaKnown RBP18.22■□□□□ 0.51
TCOF1-202ENST00000377797 KCNJ4P48050 445 aa18.21■□□□□ 0.51
TCOF1-202ENST00000377797 NECTIN2Q92692 538 aa18.21■□□□□ 0.51
TCOF1-202ENST00000377797 NPHP1O15259 732 aa18.21■□□□□ 0.51
TCOF1-202ENST00000377797 SULT6B1Q6IMI4 303 aa18.21■□□□□ 0.51
TCOF1-202ENST00000377797 TSPYL4Q9UJ04 414 aa18.21■□□□□ 0.51
TCOF1-202ENST00000377797 KIF16BQ96L93 1317 aa18.21■□□□□ 0.51
TCOF1-202ENST00000377797 EIF2S2P20042 333 aaKnown RBP18.2■□□□□ 0.5
TCOF1-202ENST00000377797 EXOSC9Q06265 439 aaKnown RBP18.2■□□□□ 0.5
TCOF1-202ENST00000377797 GOLGA6L22H0YM25 854 aa18.2■□□□□ 0.5
TCOF1-202ENST00000377797 API5Q9BZZ5 524 aaKnown RBP18.2■□□□□ 0.5
TCOF1-202ENST00000377797 SMG6Q86US8 1419 aaKnown RBP18.2■□□□□ 0.5
TCOF1-202ENST00000377797 PDE4AP27815 886 aa18.2■□□□□ 0.5
TCOF1-202ENST00000377797 TSR2Q969E8 191 aaKnown RBP18.2■□□□□ 0.5
TCOF1-202ENST00000377797 CFAP44Q96MT7 982 aa18.2■□□□□ 0.5
TCOF1-202ENST00000377797 ATP7AQ04656 1500 aa18.2■□□□□ 0.5
TCOF1-202ENST00000377797 WASLO00401 505 aaPredicted RBP18.19■□□□□ 0.5
TCOF1-202ENST00000377797 HSCBQ8IWL3 235 aa18.19■□□□□ 0.5
TCOF1-202ENST00000377797 ARHGEF12Q9NZN5 1544 aa18.19■□□□□ 0.5
TCOF1-202ENST00000377797 AMOTL2Q9Y2J4 779 aa18.19■□□□□ 0.5
TCOF1-202ENST00000377797 EVA1CP58658 441 aa18.19■□□□□ 0.5
TCOF1-202ENST00000377797 HDAC5Q9UQL6 1122 aa18.19■□□□□ 0.5
TCOF1-202ENST00000377797 CHD1O14646 1710 aa18.18■□□□□ 0.5
TCOF1-202ENST00000377797 TNRQ92752 1358 aa18.18■□□□□ 0.5
TCOF1-202ENST00000377797 UHRF1BP1LA0JNW5 1464 aa18.18■□□□□ 0.5
TCOF1-202ENST00000377797 MFAP1P55081 439 aaKnown RBP18.18■□□□□ 0.5
TCOF1-202ENST00000377797 BCAR3O75815 825 aa18.17■□□□□ 0.5
TCOF1-202ENST00000377797 NLRP2Q9NX02 1062 aa18.17■□□□□ 0.5
TCOF1-202ENST00000377797 ANKRD45Q5TZF3 282 aa18.17■□□□□ 0.5
TCOF1-202ENST00000377797 RAPGEF4Q8WZA2 1011 aa18.17■□□□□ 0.5
TCOF1-202ENST00000377797 SPRYD3Q8NCJ5 442 aa18.16■□□□□ 0.5
TCOF1-202ENST00000377797 WDR63Q8IWG1 891 aa18.16■□□□□ 0.5
TCOF1-202ENST00000377797 NME9Q86XW9 330 aa18.16■□□□□ 0.5
TCOF1-202ENST00000377797 WWC1Q8IX03 1113 aa18.15■□□□□ 0.5
TCOF1-202ENST00000377797 GCC2Q8IWJ2 1684 aa18.15■□□□□ 0.5
TCOF1-202ENST00000377797 ARHGEF5Q12774 1597 aa18.15■□□□□ 0.5
TCOF1-202ENST00000377797 FKBP5Q13451 457 aaPredicted RBP18.14■□□□□ 0.49
TCOF1-202ENST00000377797 FCHSD2O94868 740 aa18.14■□□□□ 0.49
TCOF1-202ENST00000377797 FAM161AQ3B820 660 aa18.14■□□□□ 0.49
TCOF1-202ENST00000377797 AMER1Q5JTC6 1135 aaPredicted RBP18.14■□□□□ 0.49
TCOF1-202ENST00000377797 GAS2L2Q8NHY3 880 aa18.14■□□□□ 0.49
TCOF1-202ENST00000377797 MCCP23508 829 aa18.13■□□□□ 0.49
TCOF1-202ENST00000377797 IPO9Q96P70 1041 aaKnown RBP18.13■□□□□ 0.49
TCOF1-202ENST00000377797 UHRF1BP1Q6BDS2 1440 aa18.13■□□□□ 0.49
TCOF1-202ENST00000377797 CHMP3Q9Y3E7 222 aa18.13■□□□□ 0.49
TCOF1-202ENST00000377797 ERCC6L2Q5T890 1561 aa18.13■□□□□ 0.49
TCOF1-202ENST00000377797 SLFN5Q08AF3 891 aa18.12■□□□□ 0.49
TCOF1-202ENST00000377797 TTC5Q8N0Z6 440 aa18.12■□□□□ 0.49
TCOF1-202ENST00000377797 RBM33Q96EV2 1170 aaKnown RBP18.12■□□□□ 0.49
TCOF1-202ENST00000377797 KDM6BO15054 1643 aa18.12■□□□□ 0.49
TCOF1-202ENST00000377797 NCLP19338 710 aaKnown RBP18.12■□□□□ 0.49
TCOF1-202ENST00000377797 TMPOP42166 694 aaKnown RBP18.12■□□□□ 0.49
TCOF1-202ENST00000377797 TRIM6-TRIM34B2RNG4 842 aa18.11■□□□□ 0.49
TCOF1-202ENST00000377797 FGD1P98174 961 aa18.11■□□□□ 0.49
TCOF1-202ENST00000377797 XPCQ01831 940 aaPredicted RBP18.1■□□□□ 0.49
TCOF1-202ENST00000377797 PDE3AQ14432 1141 aa18.1■□□□□ 0.49
TCOF1-202ENST00000377797 TWISTNBQ3B726 338 aaPredicted RBP18.1■□□□□ 0.49
TCOF1-202ENST00000377797 MAST1Q9Y2H9 1570 aa18.1■□□□□ 0.49
TCOF1-202ENST00000377797 KIAA1211Q6ZU35 1233 aa18.1■□□□□ 0.49
TCOF1-202ENST00000377797 SAMD9LQ8IVG5 1584 aa18.1■□□□□ 0.49
TCOF1-202ENST00000377797 EMILIN1Q9Y6C2 1016 aa18.1■□□□□ 0.49
TCOF1-202ENST00000377797 MYO5CQ9NQX4 1742 aa18.09■□□□□ 0.49
TCOF1-202ENST00000377797 SLKQ9H2G2 1235 aaPredicted RBP18.09■□□□□ 0.49
TCOF1-202ENST00000377797 AAMPQ13685 434 aa18.08■□□□□ 0.49
TCOF1-202ENST00000377797 TTC37Q6PGP7 1564 aa18.08■□□□□ 0.48
TCOF1-202ENST00000377797 RIMS2Q9UQ26 1411 aa18.08■□□□□ 0.48
TCOF1-202ENST00000377797 ADGBQ8N7X0 1667 aa18.07■□□□□ 0.48
TCOF1-202ENST00000377797 EIF2AK4Q9P2K8 1649 aaKnown RBP18.07■□□□□ 0.48
TCOF1-202ENST00000377797 NEO1Q92859 1461 aa18.06■□□□□ 0.48
TCOF1-202ENST00000377797 ZMYM3Q14202 1370 aa18.06■□□□□ 0.48
TCOF1-202ENST00000377797 PER1O15534 1290 aaPredicted RBP18.06■□□□□ 0.48
TCOF1-202ENST00000377797 NFE2L2Q16236 605 aa18.06■□□□□ 0.48
TCOF1-202ENST00000377797 C9orf78Q9NZ63 289 aaPredicted RBP18.06■□□□□ 0.48
TCOF1-202ENST00000377797 TPRNQ4KMQ1 711 aa18.05■□□□□ 0.48
TCOF1-202ENST00000377797 PARD3Q8TEW0 1356 aa18.05■□□□□ 0.48
TCOF1-202ENST00000377797 NINLQ9Y2I6 1382 aa18.05■□□□□ 0.48
TCOF1-202ENST00000377797 PLEKHO1Q53GL0 409 aaPredicted RBP18.05■□□□□ 0.48
TCOF1-202ENST00000377797 NSD2O96028 1365 aa18.05■□□□□ 0.48
TCOF1-202ENST00000377797 NEXNQ0ZGT2 675 aa18.05■□□□□ 0.48
TCOF1-202ENST00000377797 THUMPD2Q9BTF0 503 aaKnown RBP18.05■□□□□ 0.48
TCOF1-202ENST00000377797 LNPKQ9C0E8 428 aa18.04■□□□□ 0.48
TCOF1-202ENST00000377797 NOB1Q9ULX3 412 aaKnown RBP18.04■□□□□ 0.48
TCOF1-202ENST00000377797 ATP10AO60312 1499 aa18.04■□□□□ 0.48
TCOF1-202ENST00000377797 CT47B1P0C2W7 299 aaPredicted RBP18.04■□□□□ 0.48
TCOF1-202ENST00000377797 FYB1O15117 783 aa18.04■□□□□ 0.48
TCOF1-202ENST00000377797 TAF7LQ5H9L4 462 aa18.04■□□□□ 0.48
TCOF1-202ENST00000377797 GPATCH3Q96I76 525 aa18.04■□□□□ 0.48
TCOF1-202ENST00000377797 PHF8Q9UPP1 1060 aa18.04■□□□□ 0.48
TCOF1-202ENST00000377797 FBLN1P23142 703 aa18.03■□□□□ 0.48
TCOF1-202ENST00000377797 ANKRD36BQ8N2N9 1353 aa18.03■□□□□ 0.48
TCOF1-202ENST00000377797 FOXO3O43524 673 aa18.03■□□□□ 0.48
TCOF1-202ENST00000377797 CARD14Q9BXL6 1004 aa18.03■□□□□ 0.48
TCOF1-202ENST00000377797 NAP1L2Q9ULW6 460 aaPredicted RBP18.02■□□□□ 0.48
TCOF1-202ENST00000377797 DDX58O95786 925 aaKnown RBP18.02■□□□□ 0.47
TCOF1-202ENST00000377797 GORABQ5T7V8 394 aa18.02■□□□□ 0.47
TCOF1-202ENST00000377797 ACEP12821 1306 aa18.01■□□□□ 0.47
TCOF1-202ENST00000377797 ASXL1Q8IXJ9 1541 aa18.01■□□□□ 0.47
TCOF1-202ENST00000377797 CFAP65Q6ZU64 1925 aaKnown RBP18.01■□□□□ 0.47
TCOF1-202ENST00000377797 ZCCHC11Q5TAX3 1644 aaKnown RBP18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 172.9 ms