RNA–Protein interactions for RNA: ENST00000372232.7

ATG4A-203, Transcript of autophagy related 4A cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4A, Length 2,315 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-203ENST00000372232 PRKRIP1Q9H875 184 aaPredicted RBP11.52□□□□□ -0.57
ATG4A-203ENST00000372232 PLXNC1O60486 1568 aa11.52□□□□□ -0.57
ATG4A-203ENST00000372232 RALGAPBQ86X10 1494 aa11.52□□□□□ -0.57
ATG4A-203ENST00000372232 TRAK2O60296 914 aa11.52□□□□□ -0.57
ATG4A-203ENST00000372232 FLIIQ13045 1269 aa11.52□□□□□ -0.57
ATG4A-203ENST00000372232 DDRGK1Q96HY6 314 aa11.52□□□□□ -0.57
ATG4A-203ENST00000372232 IGSF3O75054 1194 aa11.51□□□□□ -0.57
ATG4A-203ENST00000372232 RGS3P49796 1198 aa11.51□□□□□ -0.57
ATG4A-203ENST00000372232 ZNF428Q96B54 188 aa11.51□□□□□ -0.57
ATG4A-203ENST00000372232 UNC13BO14795 1591 aa11.51□□□□□ -0.57
ATG4A-203ENST00000372232 PDAP1Q13442 181 aaKnown RBP11.51□□□□□ -0.57
ATG4A-203ENST00000372232 FBXO22Q8NEZ5 403 aa11.51□□□□□ -0.57
ATG4A-203ENST00000372232 NAP1L2Q9ULW6 460 aaPredicted RBP11.5□□□□□ -0.57
ATG4A-203ENST00000372232 DUOX2Q9NRD8 1548 aa11.5□□□□□ -0.57
ATG4A-203ENST00000372232 ARID4BQ4LE39 1312 aaPredicted RBP11.5□□□□□ -0.57
ATG4A-203ENST00000372232 KDM5CP41229 1560 aa11.5□□□□□ -0.57
ATG4A-203ENST00000372232 CARD11Q9BXL7 1154 aa11.49□□□□□ -0.57
ATG4A-203ENST00000372232 CCDC144AA2RUR9 1427 aa11.49□□□□□ -0.57
ATG4A-203ENST00000372232 POLR1AO95602 1720 aaPredicted RBP11.49□□□□□ -0.57
ATG4A-203ENST00000372232 PLA2R1Q13018 1463 aa11.49□□□□□ -0.57
ATG4A-203ENST00000372232 ERBINQ96RT1 1412 aa11.49□□□□□ -0.57
ATG4A-203ENST00000372232 ABCC1P33527 1531 aa11.49□□□□□ -0.57
ATG4A-203ENST00000372232 TCERG1O14776 1098 aaKnown RBP11.48□□□□□ -0.57
ATG4A-203ENST00000372232 CCDC184Q52MB2 194 aa11.48□□□□□ -0.57
ATG4A-203ENST00000372232 TRAPPC8Q9Y2L5 1435 aa11.48□□□□□ -0.57
ATG4A-203ENST00000372232 GTF2E1P29083 439 aaPredicted RBP11.48□□□□□ -0.57
ATG4A-203ENST00000372232 PHF8Q9UPP1 1060 aa11.48□□□□□ -0.57
ATG4A-203ENST00000372232 CLEC11AQ9Y240 323 aa11.47□□□□□ -0.57
ATG4A-203ENST00000372232 RNF123Q5XPI4 1314 aa11.47□□□□□ -0.57
ATG4A-203ENST00000372232 BCORL1Q5H9F3 1711 aa11.47□□□□□ -0.57
ATG4A-203ENST00000372232 ZNF467Q7Z7K2 595 aaPredicted RBP11.47□□□□□ -0.57
ATG4A-203ENST00000372232 MAGI2Q86UL8 1455 aa11.47□□□□□ -0.57
ATG4A-203ENST00000372232 ARAP3Q8WWN8 1544 aa11.47□□□□□ -0.57
ATG4A-203ENST00000372232 MTMR7Q9Y216 660 aa11.47□□□□□ -0.57
ATG4A-203ENST00000372232 IQGAP3Q86VI3 1631 aa11.46□□□□□ -0.57
ATG4A-203ENST00000372232 ZBED9Q6R2W3 1325 aa11.46□□□□□ -0.57
ATG4A-203ENST00000372232 BACH2Q9BYV9 841 aa11.46□□□□□ -0.57
ATG4A-203ENST00000372232 DHX29Q7Z478 1369 aaKnown RBP11.46□□□□□ -0.58
ATG4A-203ENST00000372232 PDE4AP27815 886 aa11.46□□□□□ -0.58
ATG4A-203ENST00000372232 WDR7Q9Y4E6 1490 aa11.45□□□□□ -0.58
ATG4A-203ENST00000372232 TPM2P07951 284 aa11.45□□□□□ -0.58
ATG4A-203ENST00000372232 L1TD1Q5T7N2 865 aaKnown RBP11.45□□□□□ -0.58
ATG4A-203ENST00000372232 RGS22Q8NE09 1264 aa11.45□□□□□ -0.58
ATG4A-203ENST00000372232 IPO4Q8TEX9 1081 aaKnown RBP11.45□□□□□ -0.58
ATG4A-203ENST00000372232 ATP10AO60312 1499 aa11.45□□□□□ -0.58
ATG4A-203ENST00000372232 PRAG1Q86YV5 1406 aa11.45□□□□□ -0.58
ATG4A-203ENST00000372232 SPAG9O60271 1321 aaKnown RBP11.45□□□□□ -0.58
ATG4A-203ENST00000372232 ST20-MTHFSA0A0A6YYL1 179 aa11.44□□□□□ -0.58
ATG4A-203ENST00000372232 MS4A1P11836 297 aa11.44□□□□□ -0.58
ATG4A-203ENST00000372232 AFAP1Q8N556 730 aa11.44□□□□□ -0.58
ATG4A-203ENST00000372232 EFCAB3Q8N7B9 438 aa11.44□□□□□ -0.58
ATG4A-203ENST00000372232 MRS2Q9HD23 443 aa11.44□□□□□ -0.58
ATG4A-203ENST00000372232 RTEL1-TNFRSF6BF6WH68 1400 aa11.44□□□□□ -0.58
ATG4A-203ENST00000372232 ROCK2O75116 1388 aaKnown RBP11.44□□□□□ -0.58
ATG4A-203ENST00000372232 RGL3Q3MIN7 710 aa11.44□□□□□ -0.58
ATG4A-203ENST00000372232 FOXD4L5Q5VV16 416 aaPredicted RBP11.44□□□□□ -0.58
ATG4A-203ENST00000372232 FOXD4L4Q8WXT5 416 aaPredicted RBP11.44□□□□□ -0.58
ATG4A-203ENST00000372232 STAC3Q96MF2 364 aa11.43□□□□□ -0.58
ATG4A-203ENST00000372232 POLR3GLQ9BT43 218 aa11.43□□□□□ -0.58
ATG4A-203ENST00000372232 ARIH1Q9Y4X5 557 aaPredicted RBP11.43□□□□□ -0.58
ATG4A-203ENST00000372232 A6NJR5 290 aa11.43□□□□□ -0.58
ATG4A-203ENST00000372232 PRR29P0C7W0 189 aa11.43□□□□□ -0.58
ATG4A-203ENST00000372232 PSEN1P49768 467 aa11.43□□□□□ -0.58
ATG4A-203ENST00000372232 MFSD10Q14728 455 aa11.43□□□□□ -0.58
ATG4A-203ENST00000372232 DDX27Q96GQ7 796 aaKnown RBP11.43□□□□□ -0.58
ATG4A-203ENST00000372232 GPR37O15354 613 aa11.42□□□□□ -0.58
ATG4A-203ENST00000372232 A2MP01023 1474 aa11.42□□□□□ -0.58
ATG4A-203ENST00000372232 ASXL2Q76L83 1435 aa11.42□□□□□ -0.58
ATG4A-203ENST00000372232 PARP9Q8IXQ6 854 aa11.42□□□□□ -0.58
ATG4A-203ENST00000372232 FAM9BQ8IZU0 186 aa11.42□□□□□ -0.58
ATG4A-203ENST00000372232 TRAIPQ9BWF2 469 aa11.42□□□□□ -0.58
ATG4A-203ENST00000372232 TSPYL2Q9H2G4 693 aaPredicted RBP11.42□□□□□ -0.58
ATG4A-203ENST00000372232 SMG6Q86US8 1419 aaKnown RBP11.41□□□□□ -0.58
ATG4A-203ENST00000372232 ZFYVE16Q7Z3T8 1539 aa11.41□□□□□ -0.58
ATG4A-203ENST00000372232 CANXP27824 592 aaKnown RBP11.41□□□□□ -0.58
ATG4A-203ENST00000372232 CHMP4BQ9H444 224 aaKnown RBP11.41□□□□□ -0.58
ATG4A-203ENST00000372232 GPRASP1Q5JY77 1395 aa11.41□□□□□ -0.58
ATG4A-203ENST00000372232 FANCAO15360 1455 aa11.41□□□□□ -0.58
ATG4A-203ENST00000372232 SMAP1Q8IYB5 467 aaPredicted RBP11.4□□□□□ -0.58
ATG4A-203ENST00000372232 CRISPLD2Q9H0B8 497 aa11.4□□□□□ -0.58
ATG4A-203ENST00000372232 FRAT2O75474 233 aaPredicted RBP11.4□□□□□ -0.59
ATG4A-203ENST00000372232 NBPF1Q3BBV0 1214 aa11.4□□□□□ -0.59
ATG4A-203ENST00000372232 TRPM1Q7Z4N2 1603 aa11.39□□□□□ -0.59
ATG4A-203ENST00000372232 ABCA9Q8IUA7 1624 aa11.39□□□□□ -0.59
ATG4A-203ENST00000372232 CAMK2BQ13554 666 aa11.38□□□□□ -0.59
ATG4A-203ENST00000372232 CCDC102AQ96A19 550 aa11.38□□□□□ -0.59
ATG4A-203ENST00000372232 DIP2BQ9P265 1576 aa11.38□□□□□ -0.59
ATG4A-203ENST00000372232 POM121Q96HA1 1249 aa11.38□□□□□ -0.59
ATG4A-203ENST00000372232 CABP2Q9NPB3 220 aa11.37□□□□□ -0.59
ATG4A-203ENST00000372232 NCLP19338 710 aaKnown RBP11.37□□□□□ -0.59
ATG4A-203ENST00000372232 NLRP6P59044 892 aa11.37□□□□□ -0.59
ATG4A-203ENST00000372232 MCM6Q14566 821 aa11.37□□□□□ -0.59
ATG4A-203ENST00000372232 SPDYE1Q8NFV5 336 aaPredicted RBP11.37□□□□□ -0.59
ATG4A-203ENST00000372232 KIF13AQ9H1H9 1805 aa11.37□□□□□ -0.59
ATG4A-203ENST00000372232 SCAPERQ9BY12 1400 aa11.36□□□□□ -0.59
ATG4A-203ENST00000372232 RETREG2Q8NC44 543 aa11.36□□□□□ -0.59
ATG4A-203ENST00000372232 ADGRL1O94910 1474 aa11.36□□□□□ -0.59
ATG4A-203ENST00000372232 RBM25P49756 843 aaKnown RBP11.36□□□□□ -0.59
ATG4A-203ENST00000372232 CNGB1Q14028 1251 aaPredicted RBP11.36□□□□□ -0.59
ATG4A-203ENST00000372232 ATP7AQ04656 1500 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms