RNA–Protein interactions for RNA: ENST00000371146.5

USP1-202, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP1, Length 3,507 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-202ENST00000371146 RPGRIP1LQ68CZ1 1315 aa9.44□□□□□ -0.9
USP1-202ENST00000371146 CFAP74Q9C0B2 1584 aa9.44□□□□□ -0.9
USP1-202ENST00000371146 ZNF316A6NFI3 1004 aaPredicted RBP9.44□□□□□ -0.9
USP1-202ENST00000371146 HMOX1P09601 288 aa9.43□□□□□ -0.9
USP1-202ENST00000371146 NPM2Q86SE8 214 aaKnown RBP9.43□□□□□ -0.9
USP1-202ENST00000371146 USP47Q96K76 1375 aa9.43□□□□□ -0.9
USP1-202ENST00000371146 ERVK-7P63135 1459 aa9.43□□□□□ -0.9
USP1-202ENST00000371146 DIEXFQ68CQ4 756 aaKnown RBP9.43□□□□□ -0.9
USP1-202ENST00000371146 BTG4Q9NY30 223 aa9.43□□□□□ -0.9
USP1-202ENST00000371146 CLTCQ00610 1675 aaKnown RBP9.43□□□□□ -0.9
USP1-202ENST00000371146 KIDINS220Q9ULH0 1771 aa9.43□□□□□ -0.9
USP1-202ENST00000371146 PRDM15P57071 1507 aaPredicted RBP9.43□□□□□ -0.9
USP1-202ENST00000371146 CAMSAP1Q5T5Y3 1602 aa9.42□□□□□ -0.9
USP1-202ENST00000371146 PDE3BQ13370 1112 aa9.42□□□□□ -0.9
USP1-202ENST00000371146 FAM98CQ17RN3 349 aaKnown RBP9.42□□□□□ -0.9
USP1-202ENST00000371146 BRINP3Q76B58 766 aa9.42□□□□□ -0.9
USP1-202ENST00000371146 FBXO41Q8TF61 875 aa9.42□□□□□ -0.9
USP1-202ENST00000371146 TCOF1Q13428 1488 aaKnown RBP9.42□□□□□ -0.9
USP1-202ENST00000371146 SCAF11Q99590 1463 aaKnown RBP9.42□□□□□ -0.9
USP1-202ENST00000371146 NLRP13Q86W25 1043 aa9.42□□□□□ -0.9
USP1-202ENST00000371146 SETD1BQ9UPS6 1966 aaKnown RBP9.42□□□□□ -0.9
USP1-202ENST00000371146 SF3B2Q13435 895 aaKnown RBP9.42□□□□□ -0.9
USP1-202ENST00000371146 NPHP1O15259 732 aa9.41□□□□□ -0.9
USP1-202ENST00000371146 QTRT2Q9H974 415 aaKnown RBP9.41□□□□□ -0.9
USP1-202ENST00000371146 USP21Q9UK80 565 aa9.41□□□□□ -0.9
USP1-202ENST00000371146 ARHGEF40Q8TER5 1519 aa9.41□□□□□ -0.9
USP1-202ENST00000371146 NEFLP07196 543 aa9.41□□□□□ -0.9
USP1-202ENST00000371146 U2AF1L5P0DN76 240 aaPredicted RBP9.41□□□□□ -0.9
USP1-202ENST00000371146 DNMT1P26358 1616 aaKnown RBP9.41□□□□□ -0.9
USP1-202ENST00000371146 U2AF1Q01081 240 aaKnown RBP eCLIP9.41□□□□□ -0.9
USP1-202ENST00000371146 ACSBG1Q96GR2 724 aa9.41□□□□□ -0.9
USP1-202ENST00000371146 ABCC3O15438 1527 aa9.4□□□□□ -0.9
USP1-202ENST00000371146 NPHP3Q7Z494 1330 aa9.4□□□□□ -0.9
USP1-202ENST00000371146 ROBO2Q9HCK4 1378 aa9.4□□□□□ -0.9
USP1-202ENST00000371146 KDM5DQ9BY66 1539 aa9.4□□□□□ -0.9
USP1-202ENST00000371146 MRS2Q9HD23 443 aa9.4□□□□□ -0.91
USP1-202ENST00000371146 NGEFQ8N5V2 710 aa9.39□□□□□ -0.91
USP1-202ENST00000371146 RRP7AQ9Y3A4 280 aaKnown RBP9.39□□□□□ -0.91
USP1-202ENST00000371146 PZPP20742 1482 aa9.39□□□□□ -0.91
USP1-202ENST00000371146 WDR43Q15061 677 aaKnown RBP eCLIP9.39□□□□□ -0.91
USP1-202ENST00000371146 EIF3AQ14152 1382 aaKnown RBP9.38□□□□□ -0.91
USP1-202ENST00000371146 CCDC146Q8IYE0 955 aa9.38□□□□□ -0.91
USP1-202ENST00000371146 C11orf95C9JLR9 678 aaPredicted RBP9.38□□□□□ -0.91
USP1-202ENST00000371146 EFCAB6Q5THR3 1501 aa9.37□□□□□ -0.91
USP1-202ENST00000371146 KTN1Q86UP2 1357 aaKnown RBP9.37□□□□□ -0.91
USP1-202ENST00000371146 PDIA4P13667 645 aaKnown RBP9.37□□□□□ -0.91
USP1-202ENST00000371146 A2ML1A8K2U0 1454 aa9.36□□□□□ -0.91
USP1-202ENST00000371146 SHANK2Q9UPX8 1470 aa9.36□□□□□ -0.91
USP1-202ENST00000371146 TIMELESSQ9UNS1 1208 aa9.36□□□□□ -0.91
USP1-202ENST00000371146 EMILIN1Q9Y6C2 1016 aa9.36□□□□□ -0.91
USP1-202ENST00000371146 PPRC1Q5VV67 1664 aaKnown RBP9.36□□□□□ -0.91
USP1-202ENST00000371146 RAPGEF4Q8WZA2 1011 aa9.36□□□□□ -0.91
USP1-202ENST00000371146 NECTIN2Q92692 538 aa9.36□□□□□ -0.91
USP1-202ENST00000371146 RTN4Q9NQC3 1192 aaKnown RBP9.36□□□□□ -0.91
USP1-202ENST00000371146 FRMPD1Q5SYB0 1578 aa9.35□□□□□ -0.91
USP1-202ENST00000371146 ELL2O00472 640 aaPredicted RBP9.35□□□□□ -0.91
USP1-202ENST00000371146 KCNQ4P56696 695 aa9.35□□□□□ -0.91
USP1-202ENST00000371146 GCP02774 474 aa9.34□□□□□ -0.91
USP1-202ENST00000371146 CFAP53Q96M91 514 aa9.34□□□□□ -0.91
USP1-202ENST00000371146 ARHGEF5Q12774 1597 aa9.34□□□□□ -0.91
USP1-202ENST00000371146 YTHDC2Q9H6S0 1430 aaKnown RBP9.34□□□□□ -0.91
USP1-202ENST00000371146 RICTORQ6R327 1708 aa9.34□□□□□ -0.91
USP1-202ENST00000371146 AFF2P51816 1311 aa9.34□□□□□ -0.91
USP1-202ENST00000371146 FER1L4A9Z1Z3 1794 aa9.34□□□□□ -0.91
USP1-202ENST00000371146 CEP152O94986 1710 aa9.33□□□□□ -0.92
USP1-202ENST00000371146 PLA2R1Q13018 1463 aa9.33□□□□□ -0.92
USP1-202ENST00000371146 MPRIPQ6WCQ1 1025 aa9.33□□□□□ -0.92
USP1-202ENST00000371146 NLRP1Q9C000 1473 aa9.33□□□□□ -0.92
USP1-202ENST00000371146 TCERG1O14776 1098 aaKnown RBP9.33□□□□□ -0.92
USP1-202ENST00000371146 HSP90AB2PQ58FF8 381 aa9.33□□□□□ -0.92
USP1-202ENST00000371146 RBM42Q9BTD8 480 aaKnown RBP9.33□□□□□ -0.92
USP1-202ENST00000371146 RXRBP28702 533 aa9.32□□□□□ -0.92
USP1-202ENST00000371146 MTHFSP49914 203 aa9.32□□□□□ -0.92
USP1-202ENST00000371146 ADGRL2O95490 1459 aa9.32□□□□□ -0.92
USP1-202ENST00000371146 KDM5CP41229 1560 aa9.32□□□□□ -0.92
USP1-202ENST00000371146 FAM177BA6PVY3 158 aa9.32□□□□□ -0.92
USP1-202ENST00000371146 PTCD1O75127 700 aaKnown RBP9.32□□□□□ -0.92
USP1-202ENST00000371146 PLEKHG1Q9ULL1 1385 aa9.32□□□□□ -0.92
USP1-202ENST00000371146 PRR36Q9H6K5 1346 aa9.31□□□□□ -0.92
USP1-202ENST00000371146 CGNL1Q0VF96 1302 aa9.31□□□□□ -0.92
USP1-202ENST00000371146 PDE4CQ08493 712 aa9.31□□□□□ -0.92
USP1-202ENST00000371146 LARP1Q6PKG0 1096 aaKnown RBP9.31□□□□□ -0.92
USP1-202ENST00000371146 NUDCQ9Y266 331 aa9.31□□□□□ -0.92
USP1-202ENST00000371146 KIF7Q2M1P5 1343 aa9.3□□□□□ -0.92
USP1-202ENST00000371146 MAPK8IP3Q9UPT6 1336 aa9.3□□□□□ -0.92
USP1-202ENST00000371146 SULT6B1Q6IMI4 303 aa9.3□□□□□ -0.92
USP1-202ENST00000371146 BCL11BQ9C0K0 894 aaPredicted RBP9.3□□□□□ -0.92
USP1-202ENST00000371146 MAST1Q9Y2H9 1570 aa9.3□□□□□ -0.92
USP1-202ENST00000371146 ZNF692Q9BU19 519 aaPredicted RBP9.3□□□□□ -0.92
USP1-202ENST00000371146 CEP170BQ9Y4F5 1589 aaPredicted RBP9.29□□□□□ -0.92
USP1-202ENST00000371146 TTC21BQ7Z4L5 1316 aa9.29□□□□□ -0.92
USP1-202ENST00000371146 TRIM37O94972 964 aa9.28□□□□□ -0.92
USP1-202ENST00000371146 HNRNPUQ00839 825 aaKnown RBP eCLIP9.28□□□□□ -0.92
USP1-202ENST00000371146 HOMEZQ8IX15 550 aa9.28□□□□□ -0.92
USP1-202ENST00000371146 MIER1Q8N108 512 aa9.28□□□□□ -0.92
USP1-202ENST00000371146 RTF1Q92541 710 aaKnown RBP9.28□□□□□ -0.92
USP1-202ENST00000371146 PPIP5K1Q6PFW1 1433 aa9.28□□□□□ -0.92
USP1-202ENST00000371146 PSDA5PKW4 1024 aaPredicted RBP9.28□□□□□ -0.92
USP1-202ENST00000371146 FAM83GA6ND36 823 aa9.28□□□□□ -0.92
USP1-202ENST00000371146 EXOC5O00471 708 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms