RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 GPBP1L1Q9HC44 474 aaPredicted RBP5.6□□□□□ -1.51
MCF2-203ENST00000370576 LRRC7Q96NW7 1537 aa5.6□□□□□ -1.51
MCF2-203ENST00000370576 DHX29Q7Z478 1369 aaKnown RBP5.6□□□□□ -1.51
MCF2-203ENST00000370576 ANKRD30AQ9BXX3 1397 aa5.6□□□□□ -1.51
MCF2-203ENST00000370576 DLC1Q96QB1 1528 aa5.6□□□□□ -1.51
MCF2-203ENST00000370576 DIP2AQ14689 1571 aa5.59□□□□□ -1.51
MCF2-203ENST00000370576 A2MP01023 1474 aa5.59□□□□□ -1.51
MCF2-203ENST00000370576 XRN1Q8IZH2 1706 aaKnown RBP5.59□□□□□ -1.51
MCF2-203ENST00000370576 P3H3Q8IVL6 736 aa5.59□□□□□ -1.51
MCF2-203ENST00000370576 RETREG2Q8NC44 543 aa5.59□□□□□ -1.51
MCF2-203ENST00000370576 SPATA32Q96LK8 384 aa5.59□□□□□ -1.51
MCF2-203ENST00000370576 NRKQ7Z2Y5 1582 aa5.59□□□□□ -1.51
MCF2-203ENST00000370576 MARF1Q9Y4F3 1742 aaKnown RBP5.59□□□□□ -1.51
MCF2-203ENST00000370576 AKAP12Q02952 1782 aa5.59□□□□□ -1.52
MCF2-203ENST00000370576 CNTLNQ9NXG0 1405 aa5.58□□□□□ -1.52
MCF2-203ENST00000370576 ASXL1Q8IXJ9 1541 aa5.58□□□□□ -1.52
MCF2-203ENST00000370576 CANXP27824 592 aaKnown RBP5.58□□□□□ -1.52
MCF2-203ENST00000370576 MAFGO15525 162 aa5.58□□□□□ -1.52
MCF2-203ENST00000370576 KDM4CQ9H3R0 1056 aa5.58□□□□□ -1.52
MCF2-203ENST00000370576 SLIT1O75093 1534 aa5.58□□□□□ -1.52
MCF2-203ENST00000370576 NWD1Q149M9 1564 aa5.57□□□□□ -1.52
MCF2-203ENST00000370576 ERVK-7P63135 1459 aa5.57□□□□□ -1.52
MCF2-203ENST00000370576 NALCNQ8IZF0 1738 aa5.57□□□□□ -1.52
MCF2-203ENST00000370576 CPS1P31327 1500 aa5.57□□□□□ -1.52
MCF2-203ENST00000370576 LOC102724159A0A0B4J2E5 919 aa5.57□□□□□ -1.52
MCF2-203ENST00000370576 PWP2Q15269 919 aaKnown RBP5.57□□□□□ -1.52
MCF2-203ENST00000370576 CADPS2Q86UW7 1296 aa5.57□□□□□ -1.52
MCF2-203ENST00000370576 CD109Q6YHK3 1445 aa5.57□□□□□ -1.52
MCF2-203ENST00000370576 MED14O60244 1454 aa5.56□□□□□ -1.52
MCF2-203ENST00000370576 SHPRHQ149N8 1683 aa5.56□□□□□ -1.52
MCF2-203ENST00000370576 RIPOR2Q9Y4F9 1068 aa5.56□□□□□ -1.52
MCF2-203ENST00000370576 QRICH2Q9H0J4 1663 aa5.56□□□□□ -1.52
MCF2-203ENST00000370576 PHRF1Q9P1Y6 1649 aaKnown RBP5.56□□□□□ -1.52
MCF2-203ENST00000370576 ARHGAP23Q9P227 1491 aa5.56□□□□□ -1.52
MCF2-203ENST00000370576 COL17A1Q9UMD9 1497 aaPredicted RBP5.56□□□□□ -1.52
MCF2-203ENST00000370576 MON2Q7Z3U7 1717 aa5.56□□□□□ -1.52
MCF2-203ENST00000370576 RBM47A0AV96 593 aaKnown RBP5.55□□□□□ -1.52
MCF2-203ENST00000370576 CLUAP1Q96AJ1 413 aa5.55□□□□□ -1.52
MCF2-203ENST00000370576 KIAA1522Q9P206 1035 aaPredicted RBP5.55□□□□□ -1.52
MCF2-203ENST00000370576 KIF15Q9NS87 1388 aa5.55□□□□□ -1.52
MCF2-203ENST00000370576 FLIIQ13045 1269 aa5.55□□□□□ -1.52
MCF2-203ENST00000370576 GRIPAP1Q4V328 841 aa5.55□□□□□ -1.52
MCF2-203ENST00000370576 SGSM3Q96HU1 749 aa5.55□□□□□ -1.52
MCF2-203ENST00000370576 SLC52A1Q9NWF4 448 aa5.55□□□□□ -1.52
MCF2-203ENST00000370576 IL27Q8NEV9 243 aa5.55□□□□□ -1.52
MCF2-203ENST00000370576 INSRP06213 1382 aa5.54□□□□□ -1.52
MCF2-203ENST00000370576 TSPOAP1O95153 1857 aa5.54□□□□□ -1.52
MCF2-203ENST00000370576 HOXD11P31277 338 aaPredicted RBP5.54□□□□□ -1.52
MCF2-203ENST00000370576 PSMD1Q99460 953 aa5.54□□□□□ -1.52
MCF2-203ENST00000370576 CRYBG1Q9Y4K1 1723 aa5.54□□□□□ -1.52
MCF2-203ENST00000370576 PLEKHD1A6NEE1 506 aa5.53□□□□□ -1.52
MCF2-203ENST00000370576 TXNDC2Q86VQ3 553 aa5.53□□□□□ -1.52
MCF2-203ENST00000370576 CHD2O14647 1828 aaKnown RBP5.53□□□□□ -1.52
MCF2-203ENST00000370576 KDM4AO75164 1064 aa5.53□□□□□ -1.52
MCF2-203ENST00000370576 SUGT1Q9Y2Z0 365 aa5.53□□□□□ -1.52
MCF2-203ENST00000370576 PIK3C2GO75747 1445 aa5.53□□□□□ -1.52
MCF2-203ENST00000370576 SBNO2Q9Y2G9 1366 aa5.53□□□□□ -1.52
MCF2-203ENST00000370576 PCGF6Q9BYE7 350 aa5.53□□□□□ -1.52
MCF2-203ENST00000370576 AEBP1Q8IUX7 1158 aa5.52□□□□□ -1.53
MCF2-203ENST00000370576 STAC3Q96MF2 364 aa5.52□□□□□ -1.53
MCF2-203ENST00000370576 ZNF644Q9H582 1327 aaPredicted RBP5.52□□□□□ -1.53
MCF2-203ENST00000370576 KIF20BQ96Q89 1820 aa5.52□□□□□ -1.53
MCF2-203ENST00000370576 USP35Q9P2H5 1018 aa5.52□□□□□ -1.53
MCF2-203ENST00000370576 NPATQ14207 1427 aa5.52□□□□□ -1.53
MCF2-203ENST00000370576 TECPR2O15040 1411 aa5.51□□□□□ -1.53
MCF2-203ENST00000370576 C8orf37Q96NL8 207 aa5.51□□□□□ -1.53
MCF2-203ENST00000370576 ALKQ9UM73 1620 aa5.51□□□□□ -1.53
MCF2-203ENST00000370576 GOPCQ9HD26 462 aa5.51□□□□□ -1.53
MCF2-203ENST00000370576 PLSCR2Q9NRY7 297 aa5.51□□□□□ -1.53
MCF2-203ENST00000370576 ARID4BQ4LE39 1312 aaPredicted RBP5.51□□□□□ -1.53
MCF2-203ENST00000370576 CAMTA1Q9Y6Y1 1673 aa5.5□□□□□ -1.53
MCF2-203ENST00000370576 KCNA1Q09470 495 aa5.5□□□□□ -1.53
MCF2-203ENST00000370576 NOM1Q5C9Z4 860 aaKnown RBP5.5□□□□□ -1.53
MCF2-203ENST00000370576 CDC42BPGQ6DT37 1551 aa5.5□□□□□ -1.53
MCF2-203ENST00000370576 XIRP1Q702N8 1843 aaKnown RBP5.5□□□□□ -1.53
MCF2-203ENST00000370576 NME8Q8N427 588 aa5.5□□□□□ -1.53
MCF2-203ENST00000370576 CCDC136Q96JN2 1154 aa5.5□□□□□ -1.53
MCF2-203ENST00000370576 ITSN1Q15811 1721 aa5.5□□□□□ -1.53
MCF2-203ENST00000370576 POLA2Q14181 598 aa5.5□□□□□ -1.53
MCF2-203ENST00000370576 EXOC8Q8IYI6 725 aa5.5□□□□□ -1.53
MCF2-203ENST00000370576 BRD1O95696 1058 aa5.49□□□□□ -1.53
MCF2-203ENST00000370576 AK7Q96M32 723 aa5.49□□□□□ -1.53
MCF2-203ENST00000370576 SRPK2P78362 688 aaKnown RBP5.49□□□□□ -1.53
MCF2-203ENST00000370576 ARHGEF1Q92888 912 aaKnown RBP5.49□□□□□ -1.53
MCF2-203ENST00000370576 FAM117AQ9C073 453 aa5.49□□□□□ -1.53
MCF2-203ENST00000370576 SERPINA10Q9UK55 444 aa5.49□□□□□ -1.53
MCF2-203ENST00000370576 PTPRMP28827 1452 aa5.48□□□□□ -1.53
MCF2-203ENST00000370576 EFCAB2Q5VUJ9 269 aa5.48□□□□□ -1.53
MCF2-203ENST00000370576 RGPD1P0DJD0 1748 aa5.48□□□□□ -1.53
MCF2-203ENST00000370576 YEATS2Q9ULM3 1422 aa5.48□□□□□ -1.53
MCF2-203ENST00000370576 NUP155O75694 1391 aa5.48□□□□□ -1.53
MCF2-203ENST00000370576 PPP1R15AO75807 674 aaPredicted RBP5.48□□□□□ -1.53
MCF2-203ENST00000370576 FMN2Q9NZ56 1722 aa5.48□□□□□ -1.53
MCF2-203ENST00000370576 MST1RQ04912 1400 aa5.48□□□□□ -1.53
MCF2-203ENST00000370576 TRIM66O15016 1216 aa5.47□□□□□ -1.53
MCF2-203ENST00000370576 MCCD1P59942 119 aaPredicted RBP5.47□□□□□ -1.53
MCF2-203ENST00000370576 MCM6Q14566 821 aa5.47□□□□□ -1.53
MCF2-203ENST00000370576 CFDP1Q9UEE9 299 aaPredicted RBP5.47□□□□□ -1.53
MCF2-203ENST00000370576 KCNG1Q9UIX4 513 aa5.47□□□□□ -1.53
MCF2-203ENST00000370576 NLRP1Q9C000 1473 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms