RNA–Protein interactions for RNA: ENST00000368838.1

SNX27-201, Transcript of sorting nexin family member 27, humanhuman

TSL 1 (best) BASIC

Gene SNX27, Length 1,308 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-201ENST00000368838 MPHOSPH9Q99550 1183 aa12.74□□□□□ -0.37
SNX27-201ENST00000368838 NCOA3Q9Y6Q9 1424 aa12.73□□□□□ -0.37
SNX27-201ENST00000368838 ASXL1Q8IXJ9 1541 aa12.73□□□□□ -0.37
SNX27-201ENST00000368838 BRINP3Q76B58 766 aa12.72□□□□□ -0.37
SNX27-201ENST00000368838 NUTM2BA6NNL0 878 aaPredicted RBP12.71□□□□□ -0.37
SNX27-201ENST00000368838 NUTM2EB1AL46 878 aaPredicted RBP12.71□□□□□ -0.37
SNX27-201ENST00000368838 MEX3CQ5U5Q3 659 aaKnown RBP12.71□□□□□ -0.37
SNX27-201ENST00000368838 NUTM2AQ8IVF1 878 aaPredicted RBP12.71□□□□□ -0.37
SNX27-201ENST00000368838 DDX17Q92841 729 aaKnown RBP12.71□□□□□ -0.37
SNX27-201ENST00000368838 MST1RQ04912 1400 aa12.71□□□□□ -0.38
SNX27-201ENST00000368838 ANKRD30BQ9BXX2 1392 aa12.71□□□□□ -0.38
SNX27-201ENST00000368838 ZNF219Q9P2Y4 722 aaPredicted RBP12.69□□□□□ -0.38
SNX27-201ENST00000368838 IFT172Q9UG01 1749 aa12.69□□□□□ -0.38
SNX27-201ENST00000368838 ADGRL3Q9HAR2 1447 aa12.68□□□□□ -0.38
SNX27-201ENST00000368838 DCCP43146 1447 aa12.67□□□□□ -0.38
SNX27-201ENST00000368838 SPATA31A6Q5VVP1 1343 aa12.67□□□□□ -0.38
SNX27-201ENST00000368838 RGPD8O14715 1765 aaPredicted RBP12.66□□□□□ -0.38
SNX27-201ENST00000368838 ROBO2Q9HCK4 1378 aa12.65□□□□□ -0.38
SNX27-201ENST00000368838 VGFO15240 615 aaPredicted RBP12.62□□□□□ -0.39
SNX27-201ENST00000368838 RGL3Q3MIN7 710 aa12.62□□□□□ -0.39
SNX27-201ENST00000368838 C1orf167Q5SNV9 1468 aa12.62□□□□□ -0.39
SNX27-201ENST00000368838 ORAI2Q96SN7 254 aa12.62□□□□□ -0.39
SNX27-201ENST00000368838 AFF2P51816 1311 aa12.61□□□□□ -0.39
SNX27-201ENST00000368838 MARF1Q9Y4F3 1742 aaKnown RBP12.61□□□□□ -0.39
SNX27-201ENST00000368838 LAMC1P11047 1609 aa12.61□□□□□ -0.39
SNX27-201ENST00000368838 PNPLA6Q8IY17 1366 aa12.61□□□□□ -0.39
SNX27-201ENST00000368838 ZNF772Q68DY9 489 aaPredicted RBP12.61□□□□□ -0.39
SNX27-201ENST00000368838 C8orf37Q96NL8 207 aa12.61□□□□□ -0.39
SNX27-201ENST00000368838 STK26Q9P289 416 aa12.61□□□□□ -0.39
SNX27-201ENST00000368838 PTCH1Q13635 1447 aa12.6□□□□□ -0.39
SNX27-201ENST00000368838 ADGRF5Q8IZF2 1346 aa12.6□□□□□ -0.39
SNX27-201ENST00000368838 ADAMTS2O95450 1211 aa12.6□□□□□ -0.39
SNX27-201ENST00000368838 LRRC59Q96AG4 307 aaKnown RBP12.6□□□□□ -0.39
SNX27-201ENST00000368838 KNDC1Q76NI1 1749 aa12.59□□□□□ -0.39
SNX27-201ENST00000368838 CCDC144AA2RUR9 1427 aa12.59□□□□□ -0.39
SNX27-201ENST00000368838 NUTM2FA1L443 756 aa12.59□□□□□ -0.39
SNX27-201ENST00000368838 MKRN4PQ13434 485 aaPredicted RBP12.59□□□□□ -0.39
SNX27-201ENST00000368838 SIN3AQ96ST3 1273 aa12.59□□□□□ -0.39
SNX27-201ENST00000368838 RPGRIP1LQ68CZ1 1315 aa12.58□□□□□ -0.39
SNX27-201ENST00000368838 RXRBP28702 533 aa12.58□□□□□ -0.4
SNX27-201ENST00000368838 STAC3Q96MF2 364 aa12.58□□□□□ -0.4
SNX27-201ENST00000368838 FMN2Q9NZ56 1722 aa12.57□□□□□ -0.4
SNX27-201ENST00000368838 TONSLQ96HA7 1378 aa12.57□□□□□ -0.4
SNX27-201ENST00000368838 XPCQ01831 940 aaPredicted RBP12.57□□□□□ -0.4
SNX27-201ENST00000368838 TMEM132EQ6IEE7 984 aa12.57□□□□□ -0.4
SNX27-201ENST00000368838 CDC42BPGQ6DT37 1551 aa12.56□□□□□ -0.4
SNX27-201ENST00000368838 SPATA31E1Q6ZUB1 1445 aa12.56□□□□□ -0.4
SNX27-201ENST00000368838 SPDYE4A6NLX3 237 aa12.56□□□□□ -0.4
SNX27-201ENST00000368838 WAPLQ7Z5K2 1190 aa12.56□□□□□ -0.4
SNX27-201ENST00000368838 COL22A1Q8NFW1 1626 aaPredicted RBP12.56□□□□□ -0.4
SNX27-201ENST00000368838 PLEKHH1Q9ULM0 1364 aa12.55□□□□□ -0.4
SNX27-201ENST00000368838 ESCO1Q5FWF5 840 aa12.55□□□□□ -0.4
SNX27-201ENST00000368838 UPF1Q92900 1129 aaKnown RBP eCLIP12.55□□□□□ -0.4
SNX27-201ENST00000368838 NGLY1Q96IV0 654 aa12.55□□□□□ -0.4
SNX27-201ENST00000368838 RGS12O14924 1447 aa12.54□□□□□ -0.4
SNX27-201ENST00000368838 PRAG1Q86YV5 1406 aa12.54□□□□□ -0.4
SNX27-201ENST00000368838 QTRT2Q9H974 415 aaKnown RBP12.53□□□□□ -0.4
SNX27-201ENST00000368838 SOS2Q07890 1332 aaPredicted RBP12.53□□□□□ -0.4
SNX27-201ENST00000368838 PIK3C2GO75747 1445 aa12.52□□□□□ -0.41
SNX27-201ENST00000368838 PXDNQ92626 1479 aa12.52□□□□□ -0.41
SNX27-201ENST00000368838 LRPPRCP42704 1394 aaKnown RBP12.51□□□□□ -0.41
SNX27-201ENST00000368838 FOXO3O43524 673 aa12.51□□□□□ -0.41
SNX27-201ENST00000368838 PLEKHG5O94827 1062 aa12.51□□□□□ -0.41
SNX27-201ENST00000368838 KIF1AQ12756 1690 aa12.5□□□□□ -0.41
SNX27-201ENST00000368838 CDK12Q9NYV4 1490 aaPredicted RBP12.5□□□□□ -0.41
SNX27-201ENST00000368838 YTHDC2Q9H6S0 1430 aaKnown RBP12.5□□□□□ -0.41
SNX27-201ENST00000368838 ZNF316A6NFI3 1004 aaPredicted RBP12.5□□□□□ -0.41
SNX27-201ENST00000368838 NEUROD1Q13562 356 aa12.5□□□□□ -0.41
SNX27-201ENST00000368838 FBXO3Q9UK99 471 aa12.5□□□□□ -0.41
SNX27-201ENST00000368838 BRWD3Q6RI45 1802 aa12.5□□□□□ -0.41
SNX27-201ENST00000368838 TECPR2O15040 1411 aa12.49□□□□□ -0.41
SNX27-201ENST00000368838 RBM6P78332 1123 aaKnown RBP12.49□□□□□ -0.41
SNX27-201ENST00000368838 SAFB2Q14151 953 aaKnown RBP eCLIP12.49□□□□□ -0.41
SNX27-201ENST00000368838 PROM2Q8N271 834 aa12.49□□□□□ -0.41
SNX27-201ENST00000368838 L3MBTL2Q969R5 705 aa12.49□□□□□ -0.41
SNX27-201ENST00000368838 USP21Q9UK80 565 aa12.49□□□□□ -0.41
SNX27-201ENST00000368838 ABCA3Q99758 1704 aa12.48□□□□□ -0.41
SNX27-201ENST00000368838 PLCB2Q00722 1185 aa12.48□□□□□ -0.41
SNX27-201ENST00000368838 CFAP70Q5T0N1 1121 aa12.48□□□□□ -0.41
SNX27-201ENST00000368838 NPHP3Q7Z494 1330 aa12.47□□□□□ -0.41
SNX27-201ENST00000368838 MYOM2P54296 1465 aa12.47□□□□□ -0.41
SNX27-201ENST00000368838 USP32Q8NFA0 1604 aa12.47□□□□□ -0.41
SNX27-201ENST00000368838 ABCC11Q96J66 1382 aa12.47□□□□□ -0.41
SNX27-201ENST00000368838 PLCH1Q4KWH8 1693 aa12.46□□□□□ -0.41
SNX27-201ENST00000368838 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.45□□□□□ -0.42
SNX27-201ENST00000368838 VASPP50552 380 aaPredicted RBP12.45□□□□□ -0.42
SNX27-201ENST00000368838 NRXN1Q9ULB1 1477 aa12.44□□□□□ -0.42
SNX27-201ENST00000368838 C14orf93Q9H972 538 aaKnown RBP12.44□□□□□ -0.42
SNX27-201ENST00000368838 ATRNO75882 1429 aa12.43□□□□□ -0.42
SNX27-201ENST00000368838 PRAM1Q96QH2 718 aa12.43□□□□□ -0.42
SNX27-201ENST00000368838 RNF39Q9H2S5 420 aa12.43□□□□□ -0.42
SNX27-201ENST00000368838 TRPC5Q9UL62 973 aaPredicted RBP12.43□□□□□ -0.42
SNX27-201ENST00000368838 BCL9LQ86UU0 1499 aa12.43□□□□□ -0.42
SNX27-201ENST00000368838 GLI3P10071 1580 aa12.42□□□□□ -0.42
SNX27-201ENST00000368838 LMOD2Q6P5Q4 547 aa12.42□□□□□ -0.42
SNX27-201ENST00000368838 KRT28Q7Z3Y7 464 aa12.42□□□□□ -0.42
SNX27-201ENST00000368838 IFNLR1Q8IU57 520 aaPredicted RBP12.42□□□□□ -0.42
SNX27-201ENST00000368838 FNBP4Q8N3X1 1017 aaPredicted RBP12.42□□□□□ -0.42
SNX27-201ENST00000368838 CABLES1Q8TDN4 633 aa12.42□□□□□ -0.42
SNX27-201ENST00000368838 KDM2AQ9Y2K7 1162 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms