RNA–Protein interactions for RNA: ENST00000367740.2

VAMP4-202, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VAMP4, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-202ENST00000367740 DEFB132Q7Z7B7 95 aa22.93■■□□□ 1.26
VAMP4-202ENST00000367740 GJD4Q96KN9 370 aaPredicted RBP22.93■■□□□ 1.26
VAMP4-202ENST00000367740 NEXMIFQ5QGS0 1516 aa22.91■■□□□ 1.26
VAMP4-202ENST00000367740 RALGAPBQ86X10 1494 aa22.9■■□□□ 1.26
VAMP4-202ENST00000367740 PXDNQ92626 1479 aa22.89■■□□□ 1.25
VAMP4-202ENST00000367740 SLIT2O94813 1529 aa22.85■■□□□ 1.25
VAMP4-202ENST00000367740 ROBO2Q9HCK4 1378 aa22.85■■□□□ 1.25
VAMP4-202ENST00000367740 PRAG1Q86YV5 1406 aa22.83■■□□□ 1.25
VAMP4-202ENST00000367740 FAM50AQ14320 339 aaKnown RBP22.83■■□□□ 1.25
VAMP4-202ENST00000367740 ZNF326Q5BKZ1 582 aaKnown RBP22.83■■□□□ 1.25
VAMP4-202ENST00000367740 CDC42BPGQ6DT37 1551 aa22.82■■□□□ 1.24
VAMP4-202ENST00000367740 CLTCL1P53675 1640 aa22.82■■□□□ 1.24
VAMP4-202ENST00000367740 APLP2Q06481 763 aa22.81■■□□□ 1.24
VAMP4-202ENST00000367740 NPHP3Q7Z494 1330 aa22.81■■□□□ 1.24
VAMP4-202ENST00000367740 USP32Q8NFA0 1604 aa22.8■■□□□ 1.24
VAMP4-202ENST00000367740 PSDA5PKW4 1024 aaPredicted RBP22.8■■□□□ 1.24
VAMP4-202ENST00000367740 SF3B2Q13435 895 aaKnown RBP22.8■■□□□ 1.24
VAMP4-202ENST00000367740 NUP155O75694 1391 aa22.79■■□□□ 1.24
VAMP4-202ENST00000367740 HRCP23327 699 aa22.79■■□□□ 1.24
VAMP4-202ENST00000367740 UNC5CLQ8IV45 518 aa22.79■■□□□ 1.24
VAMP4-202ENST00000367740 LOC105371045A0A1W2PR82 267 aa22.77■■□□□ 1.24
VAMP4-202ENST00000367740 KIF1BO60333 1816 aa22.77■■□□□ 1.24
VAMP4-202ENST00000367740 PLCH1Q4KWH8 1693 aa22.77■■□□□ 1.24
VAMP4-202ENST00000367740 XPCQ01831 940 aaPredicted RBP22.76■■□□□ 1.23
VAMP4-202ENST00000367740 HFM1A2PYH4 1435 aa22.75■■□□□ 1.23
VAMP4-202ENST00000367740 SEPT12Q8IYM1 358 aa22.75■■□□□ 1.23
VAMP4-202ENST00000367740 ROCK1Q13464 1354 aa22.75■■□□□ 1.23
VAMP4-202ENST00000367740 NWD2Q9ULI1 1742 aa22.74■■□□□ 1.23
VAMP4-202ENST00000367740 ESCO1Q5FWF5 840 aa22.73■■□□□ 1.23
VAMP4-202ENST00000367740 FOXO3O43524 673 aa22.71■■□□□ 1.23
VAMP4-202ENST00000367740 RGPD1P0DJD0 1748 aa22.7■■□□□ 1.22
VAMP4-202ENST00000367740 ABCA3Q99758 1704 aa22.7■■□□□ 1.22
VAMP4-202ENST00000367740 KRT27Q7Z3Y8 459 aa22.68■■□□□ 1.22
VAMP4-202ENST00000367740 BAG6P46379 1132 aa22.67■■□□□ 1.22
VAMP4-202ENST00000367740 KIF1AQ12756 1690 aa22.67■■□□□ 1.22
VAMP4-202ENST00000367740 LRPPRCP42704 1394 aaKnown RBP22.66■■□□□ 1.22
VAMP4-202ENST00000367740 ONECUT3O60422 494 aaPredicted RBP22.66■■□□□ 1.22
VAMP4-202ENST00000367740 VPS72Q15906 364 aa22.66■■□□□ 1.22
VAMP4-202ENST00000367740 TNS1Q9HBL0 1735 aaKnown RBP22.65■■□□□ 1.22
VAMP4-202ENST00000367740 SPATA31A3Q5VYP0 1347 aa22.65■■□□□ 1.22
VAMP4-202ENST00000367740 PPLO60437 1756 aa22.65■■□□□ 1.22
VAMP4-202ENST00000367740 NAIPQ13075 1403 aa22.65■■□□□ 1.22
VAMP4-202ENST00000367740 FMN2Q9NZ56 1722 aa22.64■■□□□ 1.21
VAMP4-202ENST00000367740 NRAPQ86VF7 1730 aa22.63■■□□□ 1.21
VAMP4-202ENST00000367740 CCDC144AA2RUR9 1427 aa22.61■■□□□ 1.21
VAMP4-202ENST00000367740 R3HDM1Q15032 1099 aaKnown RBP22.61■■□□□ 1.21
VAMP4-202ENST00000367740 VGFO15240 615 aaPredicted RBP22.59■■□□□ 1.21
VAMP4-202ENST00000367740 YY1P25490 414 aa22.59■■□□□ 1.21
VAMP4-202ENST00000367740 EN1Q05925 392 aaPredicted RBP22.59■■□□□ 1.21
VAMP4-202ENST00000367740 DISP2A7MBM2 1401 aa22.58■■□□□ 1.21
VAMP4-202ENST00000367740 NUTM2FA1L443 756 aa22.58■■□□□ 1.21
VAMP4-202ENST00000367740 CCDC9Q9Y3X0 531 aaKnown RBP22.58■■□□□ 1.21
VAMP4-202ENST00000367740 TNS3Q68CZ2 1445 aa22.57■■□□□ 1.2
VAMP4-202ENST00000367740 KNDC1Q76NI1 1749 aa22.57■■□□□ 1.2
VAMP4-202ENST00000367740 RGPD8O14715 1765 aaPredicted RBP22.56■■□□□ 1.2
VAMP4-202ENST00000367740 TECPR2O15040 1411 aa22.55■■□□□ 1.2
VAMP4-202ENST00000367740 IFT172Q9UG01 1749 aa22.54■■□□□ 1.2
VAMP4-202ENST00000367740 CABLES1Q8TDN4 633 aa22.54■■□□□ 1.2
VAMP4-202ENST00000367740 A0A0G2JS52 829 aa22.53■■□□□ 1.2
VAMP4-202ENST00000367740 HAP1P54257 671 aaPredicted RBP22.53■■□□□ 1.2
VAMP4-202ENST00000367740 MYT1Q01538 1121 aa22.53■■□□□ 1.2
VAMP4-202ENST00000367740 THSD7AQ9UPZ6 1657 aa22.52■■□□□ 1.2
VAMP4-202ENST00000367740 ADGRB2O60241 1585 aa22.52■■□□□ 1.2
VAMP4-202ENST00000367740 KRT28Q7Z3Y7 464 aa22.52■■□□□ 1.2
VAMP4-202ENST00000367740 FAM98CQ17RN3 349 aaKnown RBP22.51■■□□□ 1.19
VAMP4-202ENST00000367740 WAPLQ7Z5K2 1190 aa22.5■■□□□ 1.19
VAMP4-202ENST00000367740 RREB1Q92766 1687 aa22.49■■□□□ 1.19
VAMP4-202ENST00000367740 FAM182BQ5T319 152 aa22.49■■□□□ 1.19
VAMP4-202ENST00000367740 RPGRIP1LQ68CZ1 1315 aa22.49■■□□□ 1.19
VAMP4-202ENST00000367740 PLEKHH1Q9ULM0 1364 aa22.49■■□□□ 1.19
VAMP4-202ENST00000367740 PLEKHG5O94827 1062 aa22.48■■□□□ 1.19
VAMP4-202ENST00000367740 EZH2Q15910 746 aaKnown RBP22.47■■□□□ 1.19
VAMP4-202ENST00000367740 COL14A1Q05707 1796 aaKnown RBP22.47■■□□□ 1.19
VAMP4-202ENST00000367740 NUP188Q5SRE5 1749 aa22.46■■□□□ 1.19
VAMP4-202ENST00000367740 FAM83GA6ND36 823 aa22.46■■□□□ 1.19
VAMP4-202ENST00000367740 ITGAEP38570 1179 aa22.45■■□□□ 1.18
VAMP4-202ENST00000367740 SBNO1A3KN83 1393 aa22.45■■□□□ 1.18
VAMP4-202ENST00000367740 ARHGEF10O15013 1369 aa22.44■■□□□ 1.18
VAMP4-202ENST00000367740 STK26Q9P289 416 aa22.44■■□□□ 1.18
VAMP4-202ENST00000367740 NRXN1Q9ULB1 1477 aa22.44■■□□□ 1.18
VAMP4-202ENST00000367740 CAMKK2Q96RR4 588 aa22.42■■□□□ 1.18
VAMP4-202ENST00000367740 TRPM3Q9HCF6 1732 aaPredicted RBP22.42■■□□□ 1.18
VAMP4-202ENST00000367740 ABCC11Q96J66 1382 aa22.41■■□□□ 1.18
VAMP4-202ENST00000367740 PSME1Q06323 249 aa22.41■■□□□ 1.18
VAMP4-202ENST00000367740 BTG4Q9NY30 223 aa22.41■■□□□ 1.18
VAMP4-202ENST00000367740 CRYBG1Q9Y4K1 1723 aa22.4■■□□□ 1.18
VAMP4-202ENST00000367740 ALS2Q96Q42 1657 aa22.4■■□□□ 1.18
VAMP4-202ENST00000367740 CAMTA1Q9Y6Y1 1673 aa22.4■■□□□ 1.18
VAMP4-202ENST00000367740 PHF8Q9UPP1 1060 aa22.4■■□□□ 1.18
VAMP4-202ENST00000367740 RRBP1Q9P2E9 1410 aaKnown RBP22.4■■□□□ 1.18
VAMP4-202ENST00000367740 ADGRF5Q8IZF2 1346 aa22.39■■□□□ 1.18
VAMP4-202ENST00000367740 LMOD2Q6P5Q4 547 aa22.39■■□□□ 1.17
VAMP4-202ENST00000367740 PARD3Q8TEW0 1356 aa22.38■■□□□ 1.17
VAMP4-202ENST00000367740 SPATA31A5Q5VU36 1347 aa22.38■■□□□ 1.17
VAMP4-202ENST00000367740 SPATA31A7Q8IWB4 1347 aa22.38■■□□□ 1.17
VAMP4-202ENST00000367740 UTRNP46939 3433 aa22.37■■□□□ 1.17
VAMP4-202ENST00000367740 YTHDC2Q9H6S0 1430 aaKnown RBP22.34■■□□□ 1.17
VAMP4-202ENST00000367740 TRIM37O94972 964 aa22.34■■□□□ 1.17
VAMP4-202ENST00000367740 TMEM132EQ6IEE7 984 aa22.34■■□□□ 1.17
VAMP4-202ENST00000367740 NINLQ9Y2I6 1382 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms