RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 HDGFP51858 240 aaKnown RBP13.43□□□□□ -0.26
HMGB1P39-201ENST00000366304 ATRNO75882 1429 aa13.42□□□□□ -0.26
HMGB1P39-201ENST00000366304 USP21Q9UK80 565 aa13.42□□□□□ -0.26
HMGB1P39-201ENST00000366304 METP08581 1390 aa13.42□□□□□ -0.26
HMGB1P39-201ENST00000366304 ADGRL2O95490 1459 aa13.42□□□□□ -0.26
HMGB1P39-201ENST00000366304 FNBP4Q8N3X1 1017 aaPredicted RBP13.41□□□□□ -0.26
HMGB1P39-201ENST00000366304 ADGRL3Q9HAR2 1447 aa13.39□□□□□ -0.27
HMGB1P39-201ENST00000366304 ANKRD50Q9ULJ7 1429 aa13.39□□□□□ -0.27
HMGB1P39-201ENST00000366304 E9PCH4 1651 aa13.38□□□□□ -0.27
HMGB1P39-201ENST00000366304 C1orf167Q5SNV9 1468 aa13.38□□□□□ -0.27
HMGB1P39-201ENST00000366304 BCL9LQ86UU0 1499 aa13.38□□□□□ -0.27
HMGB1P39-201ENST00000366304 TRPC5Q9UL62 973 aaPredicted RBP13.38□□□□□ -0.27
HMGB1P39-201ENST00000366304 SOS2Q07890 1332 aaPredicted RBP13.38□□□□□ -0.27
HMGB1P39-201ENST00000366304 NALCNQ8IZF0 1738 aa13.37□□□□□ -0.27
HMGB1P39-201ENST00000366304 LOC105371045A0A1W2PR82 267 aa13.37□□□□□ -0.27
HMGB1P39-201ENST00000366304 ORAI2Q96SN7 254 aa13.37□□□□□ -0.27
HMGB1P39-201ENST00000366304 LAMC1P11047 1609 aa13.37□□□□□ -0.27
HMGB1P39-201ENST00000366304 ZBTB12Q9Y330 459 aaPredicted RBP13.36□□□□□ -0.27
HMGB1P39-201ENST00000366304 DEFB132Q7Z7B7 95 aa13.35□□□□□ -0.27
HMGB1P39-201ENST00000366304 PTCH1Q13635 1447 aa13.35□□□□□ -0.27
HMGB1P39-201ENST00000366304 MYOM2P54296 1465 aa13.34□□□□□ -0.27
HMGB1P39-201ENST00000366304 CCDC125Q86Z20 511 aa13.33□□□□□ -0.28
HMGB1P39-201ENST00000366304 COL22A1Q8NFW1 1626 aaPredicted RBP13.31□□□□□ -0.28
HMGB1P39-201ENST00000366304 ROBO2Q9HCK4 1378 aa13.31□□□□□ -0.28
HMGB1P39-201ENST00000366304 GLI3P10071 1580 aa13.3□□□□□ -0.28
HMGB1P39-201ENST00000366304 GJD4Q96KN9 370 aaPredicted RBP13.3□□□□□ -0.28
HMGB1P39-201ENST00000366304 LRP5O75197 1615 aa13.3□□□□□ -0.28
HMGB1P39-201ENST00000366304 BLMP54132 1417 aaPredicted RBP13.3□□□□□ -0.28
HMGB1P39-201ENST00000366304 IQGAP3Q86VI3 1631 aa13.28□□□□□ -0.28
HMGB1P39-201ENST00000366304 FAM50AQ14320 339 aaKnown RBP13.28□□□□□ -0.28
HMGB1P39-201ENST00000366304 RALGAPBQ86X10 1494 aa13.28□□□□□ -0.28
HMGB1P39-201ENST00000366304 PXDNQ92626 1479 aa13.28□□□□□ -0.28
HMGB1P39-201ENST00000366304 XPCQ01831 940 aaPredicted RBP13.27□□□□□ -0.29
HMGB1P39-201ENST00000366304 PSDA5PKW4 1024 aaPredicted RBP13.26□□□□□ -0.29
HMGB1P39-201ENST00000366304 NEXMIFQ5QGS0 1516 aa13.26□□□□□ -0.29
HMGB1P39-201ENST00000366304 SLIT2O94813 1529 aa13.24□□□□□ -0.29
HMGB1P39-201ENST00000366304 NUP155O75694 1391 aa13.24□□□□□ -0.29
HMGB1P39-201ENST00000366304 HRCP23327 699 aa13.24□□□□□ -0.29
HMGB1P39-201ENST00000366304 ZNF326Q5BKZ1 582 aaKnown RBP13.24□□□□□ -0.29
HMGB1P39-201ENST00000366304 BRWD3Q6RI45 1802 aa13.24□□□□□ -0.29
HMGB1P39-201ENST00000366304 MARF1Q9Y4F3 1742 aaKnown RBP13.23□□□□□ -0.29
HMGB1P39-201ENST00000366304 UNC5CLQ8IV45 518 aa13.23□□□□□ -0.29
HMGB1P39-201ENST00000366304 SEPT12Q8IYM1 358 aa13.22□□□□□ -0.29
HMGB1P39-201ENST00000366304 RBM42Q9BTD8 480 aaKnown RBP13.22□□□□□ -0.29
HMGB1P39-201ENST00000366304 FOXO3O43524 673 aa13.21□□□□□ -0.29
HMGB1P39-201ENST00000366304 ESCO1Q5FWF5 840 aa13.21□□□□□ -0.29
HMGB1P39-201ENST00000366304 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.21□□□□□ -0.3
HMGB1P39-201ENST00000366304 PRAG1Q86YV5 1406 aa13.21□□□□□ -0.3
HMGB1P39-201ENST00000366304 CLTCL1P53675 1640 aa13.2□□□□□ -0.3
HMGB1P39-201ENST00000366304 NPHP3Q7Z494 1330 aa13.19□□□□□ -0.3
HMGB1P39-201ENST00000366304 MKRN4PQ13434 485 aaPredicted RBP13.19□□□□□ -0.3
HMGB1P39-201ENST00000366304 SPHKAPQ2M3C7 1700 aa13.18□□□□□ -0.3
HMGB1P39-201ENST00000366304 ROCK1Q13464 1354 aa13.18□□□□□ -0.3
HMGB1P39-201ENST00000366304 ONECUT3O60422 494 aaPredicted RBP13.17□□□□□ -0.3
HMGB1P39-201ENST00000366304 CDC42BPGQ6DT37 1551 aa13.16□□□□□ -0.3
HMGB1P39-201ENST00000366304 NUTM2FA1L443 756 aa13.16□□□□□ -0.3
HMGB1P39-201ENST00000366304 USP32Q8NFA0 1604 aa13.15□□□□□ -0.3
HMGB1P39-201ENST00000366304 SF3B2Q13435 895 aaKnown RBP13.15□□□□□ -0.3
HMGB1P39-201ENST00000366304 VPS72Q15906 364 aa13.15□□□□□ -0.3
HMGB1P39-201ENST00000366304 CABLES1Q8TDN4 633 aa13.15□□□□□ -0.3
HMGB1P39-201ENST00000366304 SPATA31A3Q5VYP0 1347 aa13.14□□□□□ -0.31
HMGB1P39-201ENST00000366304 HFM1A2PYH4 1435 aa13.14□□□□□ -0.31
HMGB1P39-201ENST00000366304 R3HDM1Q15032 1099 aaKnown RBP13.14□□□□□ -0.31
HMGB1P39-201ENST00000366304 KRT27Q7Z3Y8 459 aa13.14□□□□□ -0.31
HMGB1P39-201ENST00000366304 NAIPQ13075 1403 aa13.13□□□□□ -0.31
HMGB1P39-201ENST00000366304 EN1Q05925 392 aaPredicted RBP13.13□□□□□ -0.31
HMGB1P39-201ENST00000366304 FAM182BQ5T319 152 aa13.13□□□□□ -0.31
HMGB1P39-201ENST00000366304 PLEKHH1Q9ULM0 1364 aa13.12□□□□□ -0.31
HMGB1P39-201ENST00000366304 WAPLQ7Z5K2 1190 aa13.12□□□□□ -0.31
HMGB1P39-201ENST00000366304 PLEKHG5O94827 1062 aa13.11□□□□□ -0.31
HMGB1P39-201ENST00000366304 PLCH1Q4KWH8 1693 aa13.1□□□□□ -0.31
HMGB1P39-201ENST00000366304 BAG6P46379 1132 aa13.1□□□□□ -0.31
HMGB1P39-201ENST00000366304 FAM83GA6ND36 823 aa13.09□□□□□ -0.31
HMGB1P39-201ENST00000366304 VGFO15240 615 aaPredicted RBP13.09□□□□□ -0.31
HMGB1P39-201ENST00000366304 ITGAEP38570 1179 aa13.09□□□□□ -0.31
HMGB1P39-201ENST00000366304 KRT28Q7Z3Y7 464 aa13.09□□□□□ -0.31
HMGB1P39-201ENST00000366304 CCDC9Q9Y3X0 531 aaKnown RBP13.09□□□□□ -0.31
HMGB1P39-201ENST00000366304 YY1P25490 414 aa13.08□□□□□ -0.32
HMGB1P39-201ENST00000366304 FAM98CQ17RN3 349 aaKnown RBP13.08□□□□□ -0.32
HMGB1P39-201ENST00000366304 LRPPRCP42704 1394 aaKnown RBP13.07□□□□□ -0.32
HMGB1P39-201ENST00000366304 EZH2Q15910 746 aaKnown RBP13.07□□□□□ -0.32
HMGB1P39-201ENST00000366304 STK26Q9P289 416 aa13.07□□□□□ -0.32
HMGB1P39-201ENST00000366304 TNS3Q68CZ2 1445 aa13.06□□□□□ -0.32
HMGB1P39-201ENST00000366304 ABCA3Q99758 1704 aa13.06□□□□□ -0.32
HMGB1P39-201ENST00000366304 NWD2Q9ULI1 1742 aa13.06□□□□□ -0.32
HMGB1P39-201ENST00000366304 ADGRF5Q8IZF2 1346 aa13.06□□□□□ -0.32
HMGB1P39-201ENST00000366304 CCDC144AA2RUR9 1427 aa13.05□□□□□ -0.32
HMGB1P39-201ENST00000366304 DISP2A7MBM2 1401 aa13.05□□□□□ -0.32
HMGB1P39-201ENST00000366304 TECPR2O15040 1411 aa13.05□□□□□ -0.32
HMGB1P39-201ENST00000366304 NRAPQ86VF7 1730 aa13.05□□□□□ -0.32
HMGB1P39-201ENST00000366304 TNS1Q9HBL0 1735 aaKnown RBP13.05□□□□□ -0.32
HMGB1P39-201ENST00000366304 FMN2Q9NZ56 1722 aa13.05□□□□□ -0.32
HMGB1P39-201ENST00000366304 KIF1BO60333 1816 aa13.04□□□□□ -0.32
HMGB1P39-201ENST00000366304 A0A0G2JS52 829 aa13.04□□□□□ -0.32
HMGB1P39-201ENST00000366304 MYT1Q01538 1121 aa13.04□□□□□ -0.32
HMGB1P39-201ENST00000366304 TMEM132EQ6IEE7 984 aa13.04□□□□□ -0.32
HMGB1P39-201ENST00000366304 CAMKK2Q96RR4 588 aa13.04□□□□□ -0.32
HMGB1P39-201ENST00000366304 PPLO60437 1756 aa13.03□□□□□ -0.32
HMGB1P39-201ENST00000366304 RPGRIP1LQ68CZ1 1315 aa13.03□□□□□ -0.32
HMGB1P39-201ENST00000366304 KIF1AQ12756 1690 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms