RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 THOC2Q8NI27 1593 aaKnown RBP17.1■□□□□ 0.33
COL6A1-201ENST00000361866 PRPF40AO75400 957 aaKnown RBP17.1■□□□□ 0.33
COL6A1-201ENST00000361866 LRPPRCP42704 1394 aaKnown RBP17.09■□□□□ 0.33
COL6A1-201ENST00000361866 TMEM57Q8N5G2 664 aa17.09■□□□□ 0.33
COL6A1-201ENST00000361866 SPINK5Q9NQ38 1064 aaPredicted RBP17.09■□□□□ 0.33
COL6A1-201ENST00000361866 PCDHB15Q9Y5E8 787 aa17.09■□□□□ 0.33
COL6A1-201ENST00000361866 REC8O95072 547 aa17.09■□□□□ 0.33
COL6A1-201ENST00000361866 PANK2Q9BZ23 570 aa17.09■□□□□ 0.33
COL6A1-201ENST00000361866 ARHGAP5Q13017 1502 aa17.09■□□□□ 0.33
COL6A1-201ENST00000361866 A0A0G2JS52 829 aa17.08■□□□□ 0.33
COL6A1-201ENST00000361866 RNF123Q5XPI4 1314 aa17.08■□□□□ 0.32
COL6A1-201ENST00000361866 HDGFP51858 240 aaKnown RBP17.08■□□□□ 0.32
COL6A1-201ENST00000361866 CDC45O75419 566 aa17.08■□□□□ 0.32
COL6A1-201ENST00000361866 NUCB2P80303 420 aa17.08■□□□□ 0.32
COL6A1-201ENST00000361866 WDR63Q8IWG1 891 aa17.08■□□□□ 0.32
COL6A1-201ENST00000361866 THUMPD2Q9BTF0 503 aaKnown RBP17.08■□□□□ 0.32
COL6A1-201ENST00000361866 API5Q9BZZ5 524 aaKnown RBP17.08■□□□□ 0.32
COL6A1-201ENST00000361866 PER1O15534 1290 aaPredicted RBP17.07■□□□□ 0.32
COL6A1-201ENST00000361866 SSH1Q8WYL5 1049 aa17.07■□□□□ 0.32
COL6A1-201ENST00000361866 FAM69CQ0P6D2 419 aa17.07■□□□□ 0.32
COL6A1-201ENST00000361866 STAC3Q96MF2 364 aa17.07■□□□□ 0.32
COL6A1-201ENST00000361866 PLEKHH1Q9ULM0 1364 aa17.07■□□□□ 0.32
COL6A1-201ENST00000361866 NKTRP30414 1462 aaKnown RBP17.06■□□□□ 0.32
COL6A1-201ENST00000361866 CDK11BP21127 795 aaKnown RBP17.06■□□□□ 0.32
COL6A1-201ENST00000361866 INTS3Q68E01 1043 aaKnown RBP17.06■□□□□ 0.32
COL6A1-201ENST00000361866 BCL11BQ9C0K0 894 aaPredicted RBP17.06■□□□□ 0.32
COL6A1-201ENST00000361866 CHD1LQ86WJ1 897 aa17.05■□□□□ 0.32
COL6A1-201ENST00000361866 COG3Q96JB2 828 aa17.05■□□□□ 0.32
COL6A1-201ENST00000361866 UGGT2Q9NYU1 1516 aa17.05■□□□□ 0.32
COL6A1-201ENST00000361866 PARD3Q8TEW0 1356 aa17.04■□□□□ 0.32
COL6A1-201ENST00000361866 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.04■□□□□ 0.32
COL6A1-201ENST00000361866 NEK4P51957 841 aa17.04■□□□□ 0.32
COL6A1-201ENST00000361866 URB2Q14146 1524 aaKnown RBP17.04■□□□□ 0.32
COL6A1-201ENST00000361866 IQGAP2Q13576 1575 aa17.04■□□□□ 0.32
COL6A1-201ENST00000361866 GNAI1P63096 354 aa17.04■□□□□ 0.32
COL6A1-201ENST00000361866 TESK2Q96S53 571 aa17.04■□□□□ 0.32
COL6A1-201ENST00000361866 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.03■□□□□ 0.32
COL6A1-201ENST00000361866 K7ELQ4 463 aaPredicted RBP17.03■□□□□ 0.32
COL6A1-201ENST00000361866 AMPHP49418 695 aa17.03■□□□□ 0.32
COL6A1-201ENST00000361866 A0A0U1RQG5 324 aaPredicted RBP17.02■□□□□ 0.32
COL6A1-201ENST00000361866 TBC1D32Q96NH3 1257 aa17.02■□□□□ 0.32
COL6A1-201ENST00000361866 PHF14O94880 888 aa17.02■□□□□ 0.31
COL6A1-201ENST00000361866 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.02■□□□□ 0.31
COL6A1-201ENST00000361866 NSD3Q9BZ95 1437 aa17.02■□□□□ 0.31
COL6A1-201ENST00000361866 RLBP1P12271 317 aa17.01■□□□□ 0.31
COL6A1-201ENST00000361866 XRCC6P12956 609 aaKnown RBP eCLIP17.01■□□□□ 0.31
COL6A1-201ENST00000361866 TMPOP42166 694 aaKnown RBP17.01■□□□□ 0.31
COL6A1-201ENST00000361866 TWISTNBQ3B726 338 aaPredicted RBP17.01■□□□□ 0.31
COL6A1-201ENST00000361866 TRIM27P14373 513 aa17.01■□□□□ 0.31
COL6A1-201ENST00000361866 FKBP5Q13451 457 aaPredicted RBP17.01■□□□□ 0.31
COL6A1-201ENST00000361866 SYNJ2O15056 1496 aa17■□□□□ 0.31
COL6A1-201ENST00000361866 KIAA0586Q9BVV6 1533 aa17■□□□□ 0.31
COL6A1-201ENST00000361866 EIF2S2P20042 333 aaKnown RBP17■□□□□ 0.31
COL6A1-201ENST00000361866 UBE2Q2Q8WVN8 375 aa17■□□□□ 0.31
COL6A1-201ENST00000361866 ADGRF5Q8IZF2 1346 aa16.99■□□□□ 0.31
COL6A1-201ENST00000361866 TNPO1Q92973 898 aaKnown RBP16.99■□□□□ 0.31
COL6A1-201ENST00000361866 CCDC9Q9Y3X0 531 aaKnown RBP16.99■□□□□ 0.31
COL6A1-201ENST00000361866 NGDNQ8NEJ9 315 aaKnown RBP16.99■□□□□ 0.31
COL6A1-201ENST00000361866 DMRT2Q9Y5R5 561 aa16.98■□□□□ 0.31
COL6A1-201ENST00000361866 CUL7Q14999 1698 aa16.98■□□□□ 0.31
COL6A1-201ENST00000361866 PRAM1Q96QH2 718 aa16.98■□□□□ 0.31
COL6A1-201ENST00000361866 ZNF608Q9ULD9 1512 aaPredicted RBP16.98■□□□□ 0.31
COL6A1-201ENST00000361866 SSFA2P28290 1259 aa16.97■□□□□ 0.31
COL6A1-201ENST00000361866 CABP1Q9NZU7 370 aa16.97■□□□□ 0.31
COL6A1-201ENST00000361866 GCC1Q96CN9 775 aa16.97■□□□□ 0.31
COL6A1-201ENST00000361866 GPATCH8Q9UKJ3 1502 aaKnown RBP16.97■□□□□ 0.31
COL6A1-201ENST00000361866 VPS37CA5D8V6 355 aaPredicted RBP16.97■□□□□ 0.31
COL6A1-201ENST00000361866 NINLQ9Y2I6 1382 aa16.97■□□□□ 0.31
COL6A1-201ENST00000361866 GOLGA6L6A8MZA4 724 aa16.97■□□□□ 0.31
COL6A1-201ENST00000361866 SCAPERQ9BY12 1400 aa16.96■□□□□ 0.31
COL6A1-201ENST00000361866 CCDC173Q0VFZ6 552 aa16.96■□□□□ 0.31
COL6A1-201ENST00000361866 RALGAPBQ86X10 1494 aa16.96■□□□□ 0.31
COL6A1-201ENST00000361866 RABEP1Q15276 862 aa16.96■□□□□ 0.31
COL6A1-201ENST00000361866 CCDC27Q2M243 656 aa16.96■□□□□ 0.31
COL6A1-201ENST00000361866 NRDCO43847 1150 aa16.95■□□□□ 0.3
COL6A1-201ENST00000361866 MAGI1Q96QZ7 1491 aaPredicted RBP16.95■□□□□ 0.3
COL6A1-201ENST00000361866 HSP90B1P14625 803 aaKnown RBP16.95■□□□□ 0.3
COL6A1-201ENST00000361866 PLEKHH2Q8IVE3 1493 aa16.95■□□□□ 0.3
COL6A1-201ENST00000361866 TSPYL4Q9UJ04 414 aa16.94■□□□□ 0.3
COL6A1-201ENST00000361866 TEX14Q8IWB6 1497 aa16.94■□□□□ 0.3
COL6A1-201ENST00000361866 FBLN1P23142 703 aa16.94■□□□□ 0.3
COL6A1-201ENST00000361866 ZNF592Q92610 1267 aa16.94■□□□□ 0.3
COL6A1-201ENST00000361866 CFAP43Q8NDM7 1665 aa16.94■□□□□ 0.3
COL6A1-201ENST00000361866 PODXL2Q9NZ53 605 aa16.94■□□□□ 0.3
COL6A1-201ENST00000361866 DCTN1Q14203 1278 aa16.93■□□□□ 0.3
COL6A1-201ENST00000361866 SPATA31E1Q6ZUB1 1445 aa16.93■□□□□ 0.3
COL6A1-201ENST00000361866 KDM2BQ8NHM5 1336 aa16.93■□□□□ 0.3
COL6A1-201ENST00000361866 RBM42Q9BTD8 480 aaKnown RBP16.92■□□□□ 0.3
COL6A1-201ENST00000361866 DIAPH3Q9NSV4 1193 aa16.92■□□□□ 0.3
COL6A1-201ENST00000361866 CCDC141Q6ZP82 1450 aa16.92■□□□□ 0.3
COL6A1-201ENST00000361866 GPRASP1Q5JY77 1395 aa16.92■□□□□ 0.3
COL6A1-201ENST00000361866 SMARCA5O60264 1052 aaPredicted RBP16.91■□□□□ 0.3
COL6A1-201ENST00000361866 ZNF428Q96B54 188 aa16.91■□□□□ 0.3
COL6A1-201ENST00000361866 CIZ1Q9ULV3 898 aaPredicted RBP16.91■□□□□ 0.3
COL6A1-201ENST00000361866 CSPP1Q1MSJ5 1256 aa16.91■□□□□ 0.3
COL6A1-201ENST00000361866 RRAGDQ9NQL2 400 aaPredicted RBP16.91■□□□□ 0.3
COL6A1-201ENST00000361866 FIBPO43427 364 aa16.91■□□□□ 0.3
COL6A1-201ENST00000361866 SMC3Q9UQE7 1217 aa16.91■□□□□ 0.3
COL6A1-201ENST00000361866 PZPP20742 1482 aa16.9■□□□□ 0.3
COL6A1-201ENST00000361866 SYCE3A1L190 88 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms