RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 KCNA6P17658 529 aa27.57■■■□□ 2
CLN3-205ENST00000359984 PTCH1Q13635 1447 aa27.56■■■□□ 2
CLN3-205ENST00000359984 EVC2Q86UK5 1308 aa27.56■■■□□ 2
CLN3-205ENST00000359984 TULP4Q9NRJ4 1543 aa27.56■■■□□ 2
CLN3-205ENST00000359984 STRCQ7RTU9 1775 aa27.55■■■□□ 2
CLN3-205ENST00000359984 CHD2O14647 1828 aaKnown RBP27.54■■■□□ 2
CLN3-205ENST00000359984 PUS7Q96PZ0 661 aaKnown RBP27.5■■□□□ 1.99
CLN3-205ENST00000359984 CABP2Q9NPB3 220 aa27.49■■□□□ 1.99
CLN3-205ENST00000359984 CDK19Q9BWU1 502 aa27.47■■□□□ 1.99
CLN3-205ENST00000359984 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.46■■□□□ 1.99
CLN3-205ENST00000359984 SRPK2P78362 688 aaKnown RBP27.46■■□□□ 1.99
CLN3-205ENST00000359984 NWD1Q149M9 1564 aa27.45■■□□□ 1.99
CLN3-205ENST00000359984 WASLO00401 505 aaPredicted RBP27.44■■□□□ 1.98
CLN3-205ENST00000359984 MYOM1P52179 1685 aa27.42■■□□□ 1.98
CLN3-205ENST00000359984 PANK3Q9H999 370 aa27.42■■□□□ 1.98
CLN3-205ENST00000359984 ADGRB2O60241 1585 aa27.41■■□□□ 1.98
CLN3-205ENST00000359984 MIER1Q8N108 512 aa27.4■■□□□ 1.98
CLN3-205ENST00000359984 ATAD2Q6PL18 1390 aa27.39■■□□□ 1.98
CLN3-205ENST00000359984 TMC1Q8TDI8 760 aa27.38■■□□□ 1.97
CLN3-205ENST00000359984 RBM33Q96EV2 1170 aaKnown RBP27.38■■□□□ 1.97
CLN3-205ENST00000359984 SLC12A5Q9H2X9 1139 aa27.38■■□□□ 1.97
CLN3-205ENST00000359984 NKTRP30414 1462 aaKnown RBP27.36■■□□□ 1.97
CLN3-205ENST00000359984 PER1O15534 1290 aaPredicted RBP27.36■■□□□ 1.97
CLN3-205ENST00000359984 DMRT2Q9Y5R5 561 aa27.36■■□□□ 1.97
CLN3-205ENST00000359984 PROSER2Q86WR7 435 aaPredicted RBP27.35■■□□□ 1.97
CLN3-205ENST00000359984 STRCP1A6NGW2 1772 aa27.34■■□□□ 1.97
CLN3-205ENST00000359984 ANP32CO43423 234 aa27.33■■□□□ 1.97
CLN3-205ENST00000359984 NUDT16Q96DE0 195 aaKnown RBP27.32■■□□□ 1.96
CLN3-205ENST00000359984 NINLQ9Y2I6 1382 aa27.32■■□□□ 1.96
CLN3-205ENST00000359984 PRR36Q9H6K5 1346 aa27.31■■□□□ 1.96
CLN3-205ENST00000359984 ADGRL3Q9HAR2 1447 aa27.3■■□□□ 1.96
CLN3-205ENST00000359984 NALCNQ8IZF0 1738 aa27.29■■□□□ 1.96
CLN3-205ENST00000359984 CABP1Q9NZU7 370 aa27.29■■□□□ 1.96
CLN3-205ENST00000359984 ZNF335Q9H4Z2 1342 aaPredicted RBP27.29■■□□□ 1.96
CLN3-205ENST00000359984 CARD14Q9BXL6 1004 aa27.28■■□□□ 1.96
CLN3-205ENST00000359984 ATP7BP35670 1465 aa27.28■■□□□ 1.96
CLN3-205ENST00000359984 CCDC61Q9Y6R9 512 aa27.27■■□□□ 1.96
CLN3-205ENST00000359984 NUTM2FA1L443 756 aa27.27■■□□□ 1.96
CLN3-205ENST00000359984 C14orf37Q86TY3 774 aa27.27■■□□□ 1.96
CLN3-205ENST00000359984 ANKRD36BQ8N2N9 1353 aa27.26■■□□□ 1.95
CLN3-205ENST00000359984 TMEM94Q12767 1356 aa27.25■■□□□ 1.95
CLN3-205ENST00000359984 PPIP5K1Q6PFW1 1433 aa27.25■■□□□ 1.95
CLN3-205ENST00000359984 CDC42BPGQ6DT37 1551 aa27.25■■□□□ 1.95
CLN3-205ENST00000359984 KNSTRNQ9Y448 316 aa27.25■■□□□ 1.95
CLN3-205ENST00000359984 AEBP2Q6ZN18 517 aaPredicted RBP27.23■■□□□ 1.95
CLN3-205ENST00000359984 PRKRIP1Q9H875 184 aaPredicted RBP27.23■■□□□ 1.95
CLN3-205ENST00000359984 CD163L1Q9NR16 1453 aa27.23■■□□□ 1.95
CLN3-205ENST00000359984 CNGB1Q14028 1251 aaPredicted RBP27.23■■□□□ 1.95
CLN3-205ENST00000359984 TERF2IPQ9NYB0 399 aa27.23■■□□□ 1.95
CLN3-205ENST00000359984 NCOA3Q9Y6Q9 1424 aa27.22■■□□□ 1.95
CLN3-205ENST00000359984 USP32Q8NFA0 1604 aa27.22■■□□□ 1.95
CLN3-205ENST00000359984 A0A1W2PP64 1363 aa27.21■■□□□ 1.95
CLN3-205ENST00000359984 FMN2Q9NZ56 1722 aa27.21■■□□□ 1.95
CLN3-205ENST00000359984 ANKARQ7Z5J8 1434 aa27.2■■□□□ 1.95
CLN3-205ENST00000359984 AMER1Q5JTC6 1135 aaPredicted RBP27.2■■□□□ 1.94
CLN3-205ENST00000359984 C19orf44Q9H6X5 657 aa27.2■■□□□ 1.94
CLN3-205ENST00000359984 NSD3Q9BZ95 1437 aa27.2■■□□□ 1.94
CLN3-205ENST00000359984 HDGFL2Q7Z4V5 671 aaPredicted RBP27.19■■□□□ 1.94
CLN3-205ENST00000359984 TOPAZ1Q8N9V7 1692 aa27.18■■□□□ 1.94
CLN3-205ENST00000359984 LRRC7Q96NW7 1537 aa27.18■■□□□ 1.94
CLN3-205ENST00000359984 PLEKHG3A1L390 1219 aa27.17■■□□□ 1.94
CLN3-205ENST00000359984 CC2D1BQ5T0F9 858 aaKnown RBP27.17■■□□□ 1.94
CLN3-205ENST00000359984 CPSF1Q10570 1443 aaKnown RBP27.16■■□□□ 1.94
CLN3-205ENST00000359984 KTN1Q86UP2 1357 aaKnown RBP27.16■■□□□ 1.94
CLN3-205ENST00000359984 NPC1L1Q9UHC9 1359 aa27.14■■□□□ 1.94
CLN3-205ENST00000359984 RGPD8O14715 1765 aaPredicted RBP27.13■■□□□ 1.93
CLN3-205ENST00000359984 RALBP1Q15311 655 aa27.12■■□□□ 1.93
CLN3-205ENST00000359984 XIRP1Q702N8 1843 aaKnown RBP27.12■■□□□ 1.93
CLN3-205ENST00000359984 ACEP12821 1306 aa27.12■■□□□ 1.93
CLN3-205ENST00000359984 ITSN1Q15811 1721 aa27.12■■□□□ 1.93
CLN3-205ENST00000359984 PARD3Q8TEW0 1356 aa27.11■■□□□ 1.93
CLN3-205ENST00000359984 DCCP43146 1447 aa27.11■■□□□ 1.93
CLN3-205ENST00000359984 PMFBP1Q8TBY8 1022 aa27.1■■□□□ 1.93
CLN3-205ENST00000359984 ATF3P18847 181 aa27.1■■□□□ 1.93
CLN3-205ENST00000359984 ZNF692Q9BU19 519 aaPredicted RBP27.1■■□□□ 1.93
CLN3-205ENST00000359984 CGNL1Q0VF96 1302 aa27.1■■□□□ 1.93
CLN3-205ENST00000359984 CCER2I3L3R5 266 aa27.09■■□□□ 1.93
CLN3-205ENST00000359984 MSH6P52701 1360 aa27.09■■□□□ 1.93
CLN3-205ENST00000359984 POLR3AO14802 1390 aaPredicted RBP27.07■■□□□ 1.92
CLN3-205ENST00000359984 AKAP12Q02952 1782 aa27.07■■□□□ 1.92
CLN3-205ENST00000359984 CADPS2Q86UW7 1296 aa27.06■■□□□ 1.92
CLN3-205ENST00000359984 NGDNQ8NEJ9 315 aaKnown RBP27.06■■□□□ 1.92
CLN3-205ENST00000359984 PHF8Q9UPP1 1060 aa27.06■■□□□ 1.92
CLN3-205ENST00000359984 EDC4Q6P2E9 1401 aaKnown RBP27.06■■□□□ 1.92
CLN3-205ENST00000359984 ESCO1Q5FWF5 840 aa27.05■■□□□ 1.92
CLN3-205ENST00000359984 C1orf167Q5SNV9 1468 aa27.04■■□□□ 1.92
CLN3-205ENST00000359984 MON2Q7Z3U7 1717 aa27.04■■□□□ 1.92
CLN3-205ENST00000359984 MST1RQ04912 1400 aa27.04■■□□□ 1.92
CLN3-205ENST00000359984 MYBBP1AQ9BQG0 1328 aaKnown RBP27.02■■□□□ 1.92
CLN3-205ENST00000359984 FYB1O15117 783 aa27.02■■□□□ 1.92
CLN3-205ENST00000359984 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.02■■□□□ 1.92
CLN3-205ENST00000359984 ORAI2Q96SN7 254 aa27.02■■□□□ 1.92
CLN3-205ENST00000359984 USP6P35125 1406 aa27.02■■□□□ 1.92
CLN3-205ENST00000359984 NSD2O96028 1365 aa27.02■■□□□ 1.92
CLN3-205ENST00000359984 LTBP4Q8N2S1 1624 aa27.02■■□□□ 1.92
CLN3-205ENST00000359984 CCDC184Q52MB2 194 aa27■■□□□ 1.91
CLN3-205ENST00000359984 GGNBP2Q9H3C7 697 aa27■■□□□ 1.91
CLN3-205ENST00000359984 SSH2Q76I76 1423 aa26.98■■□□□ 1.91
CLN3-205ENST00000359984 MORC1Q86VD1 984 aa26.98■■□□□ 1.91
CLN3-205ENST00000359984 TTC21BQ7Z4L5 1316 aa26.98■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms