RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 OFD1O75665 1012 aa19.34■□□□□ 0.69
COL18A1-203ENST00000359759 SPC24Q8NBT2 197 aa19.34■□□□□ 0.69
COL18A1-203ENST00000359759 BRPF1P55201 1214 aaPredicted RBP19.34■□□□□ 0.69
COL18A1-203ENST00000359759 ABCC8Q09428 1581 aa19.33■□□□□ 0.69
COL18A1-203ENST00000359759 HSP90AB3PQ58FF7 597 aa19.33■□□□□ 0.69
COL18A1-203ENST00000359759 NEUROD6Q96NK8 337 aa19.33■□□□□ 0.69
COL18A1-203ENST00000359759 WASHC4Q2M389 1173 aa19.33■□□□□ 0.68
COL18A1-203ENST00000359759 EFCAB2Q5VUJ9 269 aa19.33■□□□□ 0.68
COL18A1-203ENST00000359759 TRIM5Q9C035 493 aa19.33■□□□□ 0.68
COL18A1-203ENST00000359759 NAT10Q9H0A0 1025 aaKnown RBP19.33■□□□□ 0.68
COL18A1-203ENST00000359759 BRPF3Q9ULD4 1205 aa19.33■□□□□ 0.68
COL18A1-203ENST00000359759 MINK1Q8N4C8 1332 aaPredicted RBP19.33■□□□□ 0.68
COL18A1-203ENST00000359759 PRKRIP1Q9H875 184 aaPredicted RBP19.33■□□□□ 0.68
COL18A1-203ENST00000359759 DCTN1Q14203 1278 aa19.32■□□□□ 0.68
COL18A1-203ENST00000359759 TSPYL1Q9H0U9 437 aa19.32■□□□□ 0.68
COL18A1-203ENST00000359759 CWC22Q9HCG8 908 aaKnown RBP19.32■□□□□ 0.68
COL18A1-203ENST00000359759 FMNL2Q96PY5 1086 aa19.32■□□□□ 0.68
COL18A1-203ENST00000359759 PANK1Q8TE04 598 aa19.31■□□□□ 0.68
COL18A1-203ENST00000359759 CCDC173Q0VFZ6 552 aa19.31■□□□□ 0.68
COL18A1-203ENST00000359759 SDF4Q9BRK5 362 aa19.31■□□□□ 0.68
COL18A1-203ENST00000359759 MRE11P49959 708 aa19.3■□□□□ 0.68
COL18A1-203ENST00000359759 AXDND1Q5T1B0 1012 aaPredicted RBP19.3■□□□□ 0.68
COL18A1-203ENST00000359759 AIMP1Q12904 312 aaKnown RBP19.3■□□□□ 0.68
COL18A1-203ENST00000359759 MPNDQ8N594 471 aa19.3■□□□□ 0.68
COL18A1-203ENST00000359759 RALYLQ86SE5 291 aaKnown RBP19.29■□□□□ 0.68
COL18A1-203ENST00000359759 CEBPZQ03701 1054 aaKnown RBP19.29■□□□□ 0.68
COL18A1-203ENST00000359759 TRAK2O60296 914 aa19.29■□□□□ 0.68
COL18A1-203ENST00000359759 DIAPH1O60610 1272 aaKnown RBP19.29■□□□□ 0.68
COL18A1-203ENST00000359759 ERCC4Q92889 916 aaPredicted RBP19.28■□□□□ 0.68
COL18A1-203ENST00000359759 TSPY26PQ9H489 355 aa19.28■□□□□ 0.68
COL18A1-203ENST00000359759 ATP2B1P20020 1258 aa19.28■□□□□ 0.68
COL18A1-203ENST00000359759 API5Q9BZZ5 524 aaKnown RBP19.28■□□□□ 0.68
COL18A1-203ENST00000359759 ROCK1Q13464 1354 aa19.28■□□□□ 0.68
COL18A1-203ENST00000359759 HMOX1P09601 288 aa19.27■□□□□ 0.68
COL18A1-203ENST00000359759 PRPF40AO75400 957 aaKnown RBP19.27■□□□□ 0.68
COL18A1-203ENST00000359759 LEKR1Q6ZMV7 388 aa19.27■□□□□ 0.68
COL18A1-203ENST00000359759 CARMIL2Q6F5E8 1435 aa19.27■□□□□ 0.68
COL18A1-203ENST00000359759 DDX58O95786 925 aaKnown RBP19.27■□□□□ 0.68
COL18A1-203ENST00000359759 EVC2Q86UK5 1308 aa19.27■□□□□ 0.67
COL18A1-203ENST00000359759 TSPYL4Q9UJ04 414 aa19.27■□□□□ 0.67
COL18A1-203ENST00000359759 ERC2O15083 957 aa19.26■□□□□ 0.67
COL18A1-203ENST00000359759 BRMS1Q9HCU9 246 aa19.26■□□□□ 0.67
COL18A1-203ENST00000359759 CCDC66A2RUB6 948 aa19.25■□□□□ 0.67
COL18A1-203ENST00000359759 IL27Q8NEV9 243 aa19.25■□□□□ 0.67
COL18A1-203ENST00000359759 PDS5BQ9NTI5 1447 aa19.25■□□□□ 0.67
COL18A1-203ENST00000359759 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.25■□□□□ 0.67
COL18A1-203ENST00000359759 CCDC144AA2RUR9 1427 aa19.25■□□□□ 0.67
COL18A1-203ENST00000359759 PKNOX2Q96KN3 472 aa19.25■□□□□ 0.67
COL18A1-203ENST00000359759 USP47Q96K76 1375 aa19.25■□□□□ 0.67
COL18A1-203ENST00000359759 CDC45O75419 566 aa19.25■□□□□ 0.67
COL18A1-203ENST00000359759 STK11IPQ8N1F8 1099 aa19.24■□□□□ 0.67
COL18A1-203ENST00000359759 RIC3Q7Z5B4 369 aa19.24■□□□□ 0.67
COL18A1-203ENST00000359759 MAPK8IP2Q13387 824 aaPredicted RBP19.23■□□□□ 0.67
COL18A1-203ENST00000359759 NEFHP12036 1026 aa19.23■□□□□ 0.67
COL18A1-203ENST00000359759 ANKRD62A6NC57 917 aa19.22■□□□□ 0.67
COL18A1-203ENST00000359759 KLHL34Q8N239 644 aa19.22■□□□□ 0.67
COL18A1-203ENST00000359759 MYO6Q9UM54 1294 aa19.22■□□□□ 0.67
COL18A1-203ENST00000359759 IKQ13123 557 aaPredicted RBP19.22■□□□□ 0.67
COL18A1-203ENST00000359759 RBM33Q96EV2 1170 aaKnown RBP19.22■□□□□ 0.67
COL18A1-203ENST00000359759 TMEM132AQ24JP5 1023 aa19.22■□□□□ 0.67
COL18A1-203ENST00000359759 DNAJC2Q99543 621 aaKnown RBP19.22■□□□□ 0.67
COL18A1-203ENST00000359759 NINLQ9Y2I6 1382 aa19.21■□□□□ 0.67
COL18A1-203ENST00000359759 MAGEC2Q9UBF1 373 aaPredicted RBP19.21■□□□□ 0.67
COL18A1-203ENST00000359759 CT47B1P0C2W7 299 aaPredicted RBP19.21■□□□□ 0.67
COL18A1-203ENST00000359759 PHF23Q9BUL5 403 aaPredicted RBP19.21■□□□□ 0.67
COL18A1-203ENST00000359759 FAM177A1Q8N128 213 aaPredicted RBP19.21■□□□□ 0.67
COL18A1-203ENST00000359759 SMARCE1Q969G3 411 aa19.21■□□□□ 0.67
COL18A1-203ENST00000359759 FSD1Q9BTV5 496 aa19.21■□□□□ 0.67
COL18A1-203ENST00000359759 MTERF4Q7Z6M4 381 aaKnown RBP19.2■□□□□ 0.66
COL18A1-203ENST00000359759 RUNDC1Q96C34 613 aa19.2■□□□□ 0.66
COL18A1-203ENST00000359759 FIBPO43427 364 aa19.2■□□□□ 0.66
COL18A1-203ENST00000359759 LETM1O95202 739 aaPredicted RBP19.2■□□□□ 0.66
COL18A1-203ENST00000359759 FAM193AP78312 1265 aa19.2■□□□□ 0.66
COL18A1-203ENST00000359759 CNTROBQ8N137 903 aa19.2■□□□□ 0.66
COL18A1-203ENST00000359759 KINO60870 393 aaKnown RBP19.19■□□□□ 0.66
COL18A1-203ENST00000359759 ZNF428Q96B54 188 aa19.19■□□□□ 0.66
COL18A1-203ENST00000359759 XBP1P17861 261 aa19.19■□□□□ 0.66
COL18A1-203ENST00000359759 PSMA5P28066 241 aa19.19■□□□□ 0.66
COL18A1-203ENST00000359759 FHOD3Q2V2M9 1422 aa19.19■□□□□ 0.66
COL18A1-203ENST00000359759 FILIP1LQ4L180 1135 aa19.18■□□□□ 0.66
COL18A1-203ENST00000359759 CDK5RAP3Q96JB5 506 aa19.18■□□□□ 0.66
COL18A1-203ENST00000359759 CENPHQ9H3R5 247 aa19.18■□□□□ 0.66
COL18A1-203ENST00000359759 C1orf115Q9H7X2 142 aa19.18■□□□□ 0.66
COL18A1-203ENST00000359759 UBTFL1P0CB47 393 aaPredicted RBP19.17■□□□□ 0.66
COL18A1-203ENST00000359759 STK3Q13188 491 aa19.17■□□□□ 0.66
COL18A1-203ENST00000359759 ENOX2Q16206 610 aaKnown RBP19.17■□□□□ 0.66
COL18A1-203ENST00000359759 FAM177BA6PVY3 158 aa19.17■□□□□ 0.66
COL18A1-203ENST00000359759 HSP90AB4PQ58FF6 505 aa19.17■□□□□ 0.66
COL18A1-203ENST00000359759 SERPINC1P01008 464 aa19.16■□□□□ 0.66
COL18A1-203ENST00000359759 NEK4P51957 841 aa19.16■□□□□ 0.66
COL18A1-203ENST00000359759 PAF1Q8N7H5 531 aa19.16■□□□□ 0.66
COL18A1-203ENST00000359759 SYCP1Q15431 976 aa19.15■□□□□ 0.66
COL18A1-203ENST00000359759 ERICH4A6NGS2 130 aa19.15■□□□□ 0.66
COL18A1-203ENST00000359759 PSME1Q06323 249 aa19.15■□□□□ 0.66
COL18A1-203ENST00000359759 NUTM2GQ5VZR2 741 aa19.15■□□□□ 0.66
COL18A1-203ENST00000359759 MEX3CQ5U5Q3 659 aaKnown RBP19.15■□□□□ 0.66
COL18A1-203ENST00000359759 DHX57Q6P158 1386 aaKnown RBP19.14■□□□□ 0.66
COL18A1-203ENST00000359759 UQCRHLA0A096LP55 91 aa19.14■□□□□ 0.65
COL18A1-203ENST00000359759 MAP4K4O95819 1239 aaPredicted RBP19.14■□□□□ 0.65
COL18A1-203ENST00000359759 KRT18P05783 430 aaKnown RBP19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms