RNA–Protein interactions for RNA: ENST00000358730.6

RFX3-202, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 2,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-202ENST00000358730 GLI2P10070 1586 aa11.18□□□□□ -0.62
RFX3-202ENST00000358730 SLC12A5Q9H2X9 1139 aa11.18□□□□□ -0.62
RFX3-202ENST00000358730 USP32Q8NFA0 1604 aa11.17□□□□□ -0.62
RFX3-202ENST00000358730 SIGLEC1Q9BZZ2 1709 aa11.17□□□□□ -0.62
RFX3-202ENST00000358730 LAS1LQ9Y4W2 734 aaKnown RBP11.16□□□□□ -0.62
RFX3-202ENST00000358730 DDRGK1Q96HY6 314 aa11.16□□□□□ -0.62
RFX3-202ENST00000358730 ARHGEF28Q8N1W1 1705 aaKnown RBP11.16□□□□□ -0.62
RFX3-202ENST00000358730 WWC1Q8IX03 1113 aa11.16□□□□□ -0.62
RFX3-202ENST00000358730 RPGRIP1LQ68CZ1 1315 aa11.16□□□□□ -0.62
RFX3-202ENST00000358730 PIK3C2BO00750 1634 aa11.15□□□□□ -0.62
RFX3-202ENST00000358730 CANXP27824 592 aaKnown RBP11.15□□□□□ -0.62
RFX3-202ENST00000358730 RGS3P49796 1198 aa11.15□□□□□ -0.62
RFX3-202ENST00000358730 IQSEC2Q5JU85 1478 aa11.14□□□□□ -0.63
RFX3-202ENST00000358730 CGNL1Q0VF96 1302 aa11.14□□□□□ -0.63
RFX3-202ENST00000358730 NEUROD2Q15784 382 aa11.14□□□□□ -0.63
RFX3-202ENST00000358730 FAM161AQ3B820 660 aa11.14□□□□□ -0.63
RFX3-202ENST00000358730 NUTM2DQ5VT03 806 aaPredicted RBP11.14□□□□□ -0.63
RFX3-202ENST00000358730 RRP7AQ9Y3A4 280 aaKnown RBP11.14□□□□□ -0.63
RFX3-202ENST00000358730 NEXMIFQ5QGS0 1516 aa11.14□□□□□ -0.63
RFX3-202ENST00000358730 TULP4Q9NRJ4 1543 aa11.14□□□□□ -0.63
RFX3-202ENST00000358730 NINLQ9Y2I6 1382 aa11.14□□□□□ -0.63
RFX3-202ENST00000358730 RUNDC1Q96C34 613 aa11.13□□□□□ -0.63
RFX3-202ENST00000358730 DIP2CQ9Y2E4 1556 aa11.13□□□□□ -0.63
RFX3-202ENST00000358730 C8orf34Q49A92 452 aa11.13□□□□□ -0.63
RFX3-202ENST00000358730 EVC2Q86UK5 1308 aa11.12□□□□□ -0.63
RFX3-202ENST00000358730 RAPGEF3O95398 923 aa11.12□□□□□ -0.63
RFX3-202ENST00000358730 NEFMP07197 916 aa11.12□□□□□ -0.63
RFX3-202ENST00000358730 MTHFSP49914 203 aa11.12□□□□□ -0.63
RFX3-202ENST00000358730 PDE3AQ14432 1141 aa11.12□□□□□ -0.63
RFX3-202ENST00000358730 TCP11L2Q8N4U5 519 aa11.12□□□□□ -0.63
RFX3-202ENST00000358730 CFAP53Q96M91 514 aa11.12□□□□□ -0.63
RFX3-202ENST00000358730 ANKRD36BQ8N2N9 1353 aa11.12□□□□□ -0.63
RFX3-202ENST00000358730 NEO1Q92859 1461 aa11.11□□□□□ -0.63
RFX3-202ENST00000358730 VGFO15240 615 aaPredicted RBP11.11□□□□□ -0.63
RFX3-202ENST00000358730 OSCARQ8IYS5 282 aa11.11□□□□□ -0.63
RFX3-202ENST00000358730 PPM1GO15355 546 aaPredicted RBP11.1□□□□□ -0.63
RFX3-202ENST00000358730 PANK1Q8TE04 598 aa11.1□□□□□ -0.63
RFX3-202ENST00000358730 FRAT1Q92837 279 aaPredicted RBP11.1□□□□□ -0.63
RFX3-202ENST00000358730 COG6Q9Y2V7 657 aa11.1□□□□□ -0.63
RFX3-202ENST00000358730 VIRMAQ69YN4 1812 aaKnown RBP11.1□□□□□ -0.63
RFX3-202ENST00000358730 NSD2O96028 1365 aa11.1□□□□□ -0.63
RFX3-202ENST00000358730 SAFB2Q14151 953 aaKnown RBP eCLIP11.1□□□□□ -0.63
RFX3-202ENST00000358730 CLUAP1Q96AJ1 413 aa11.1□□□□□ -0.63
RFX3-202ENST00000358730 CABP2Q9NPB3 220 aa11.1□□□□□ -0.63
RFX3-202ENST00000358730 IGHDP01880 384 aa11.09□□□□□ -0.63
RFX3-202ENST00000358730 DAXXQ9UER7 740 aaPredicted RBP11.09□□□□□ -0.63
RFX3-202ENST00000358730 MYO5BQ9ULV0 1848 aa11.09□□□□□ -0.63
RFX3-202ENST00000358730 SENP3Q9H4L4 574 aaPredicted RBP11.09□□□□□ -0.63
RFX3-202ENST00000358730 USP35Q9P2H5 1018 aa11.09□□□□□ -0.63
RFX3-202ENST00000358730 RICTORQ6R327 1708 aa11.08□□□□□ -0.64
RFX3-202ENST00000358730 PUS7Q96PZ0 661 aaKnown RBP11.08□□□□□ -0.64
RFX3-202ENST00000358730 RARSP54136 660 aaKnown RBP11.08□□□□□ -0.64
RFX3-202ENST00000358730 WDR63Q8IWG1 891 aa11.08□□□□□ -0.64
RFX3-202ENST00000358730 ARHGAP31Q2M1Z3 1444 aa11.08□□□□□ -0.64
RFX3-202ENST00000358730 U2AF1L5P0DN76 240 aaPredicted RBP11.07□□□□□ -0.64
RFX3-202ENST00000358730 SLC4A3P48751 1232 aa11.07□□□□□ -0.64
RFX3-202ENST00000358730 U2AF1Q01081 240 aaKnown RBP eCLIP11.07□□□□□ -0.64
RFX3-202ENST00000358730 IDI1Q13907 227 aa11.07□□□□□ -0.64
RFX3-202ENST00000358730 A0A1W2PP64 1363 aa11.07□□□□□ -0.64
RFX3-202ENST00000358730 BCL2L13Q9BXK5 485 aa11.07□□□□□ -0.64
RFX3-202ENST00000358730 STK26Q9P289 416 aa11.07□□□□□ -0.64
RFX3-202ENST00000358730 ADGRB2O60241 1585 aa11.06□□□□□ -0.64
RFX3-202ENST00000358730 CCDC27Q2M243 656 aa11.06□□□□□ -0.64
RFX3-202ENST00000358730 PREX1Q8TCU6 1659 aa11.06□□□□□ -0.64
RFX3-202ENST00000358730 YEATS2Q9ULM3 1422 aa11.06□□□□□ -0.64
RFX3-202ENST00000358730 SRPK2P78362 688 aaKnown RBP11.06□□□□□ -0.64
RFX3-202ENST00000358730 MYH16Q9H6N6 1097 aa11.05□□□□□ -0.64
RFX3-202ENST00000358730 MAPK8IP3Q9UPT6 1336 aa11.05□□□□□ -0.64
RFX3-202ENST00000358730 ABCC11Q96J66 1382 aa11.05□□□□□ -0.64
RFX3-202ENST00000358730 ZFYVE9O95405 1425 aa11.05□□□□□ -0.64
RFX3-202ENST00000358730 SLC52A1Q9NWF4 448 aa11.04□□□□□ -0.64
RFX3-202ENST00000358730 RLBP1P12271 317 aa11.04□□□□□ -0.64
RFX3-202ENST00000358730 TNNQ9UQP3 1299 aa11.04□□□□□ -0.64
RFX3-202ENST00000358730 TMEM131LA2VDJ0 1609 aa11.04□□□□□ -0.64
RFX3-202ENST00000358730 PTPRMP28827 1452 aa11.04□□□□□ -0.64
RFX3-202ENST00000358730 ANKRD26Q9UPS8 1709 aa11.03□□□□□ -0.64
RFX3-202ENST00000358730 GGNBP2Q9H3C7 697 aa11.03□□□□□ -0.64
RFX3-202ENST00000358730 MINK1Q8N4C8 1332 aaPredicted RBP11.03□□□□□ -0.64
RFX3-202ENST00000358730 U2SURPO15042 1029 aaKnown RBP11.03□□□□□ -0.64
RFX3-202ENST00000358730 PMFBP1Q8TBY8 1022 aa11.03□□□□□ -0.64
RFX3-202ENST00000358730 ATAD2Q6PL18 1390 aa11.02□□□□□ -0.64
RFX3-202ENST00000358730 CLTCQ00610 1675 aaKnown RBP11.02□□□□□ -0.64
RFX3-202ENST00000358730 AAMPQ13685 434 aa11.02□□□□□ -0.65
RFX3-202ENST00000358730 NCBP3Q53F19 620 aaKnown RBP11.01□□□□□ -0.65
RFX3-202ENST00000358730 PRAM1Q96QH2 718 aa11.01□□□□□ -0.65
RFX3-202ENST00000358730 PCDHB15Q9Y5E8 787 aa11.01□□□□□ -0.65
RFX3-202ENST00000358730 COL3A1P02461 1466 aaPredicted RBP11.01□□□□□ -0.65
RFX3-202ENST00000358730 NFKBIBQ15653 356 aa11.01□□□□□ -0.65
RFX3-202ENST00000358730 TSR2Q969E8 191 aaKnown RBP11.01□□□□□ -0.65
RFX3-202ENST00000358730 POGKQ9P215 609 aa11.01□□□□□ -0.65
RFX3-202ENST00000358730 YTHDC2Q9H6S0 1430 aaKnown RBP11.01□□□□□ -0.65
RFX3-202ENST00000358730 TERF2IPQ9NYB0 399 aa11.01□□□□□ -0.65
RFX3-202ENST00000358730 CD163L1Q9NR16 1453 aa11□□□□□ -0.65
RFX3-202ENST00000358730 FTSJ3Q8IY81 847 aaKnown RBP11□□□□□ -0.65
RFX3-202ENST00000358730 NLRP1Q9C000 1473 aa10.99□□□□□ -0.65
RFX3-202ENST00000358730 USP19O94966 1318 aa10.99□□□□□ -0.65
RFX3-202ENST00000358730 TMPOP42166 694 aaKnown RBP10.99□□□□□ -0.65
RFX3-202ENST00000358730 MVPQ14764 893 aaKnown RBP10.99□□□□□ -0.65
RFX3-202ENST00000358730 ZKSCAN2Q63HK3 967 aa10.99□□□□□ -0.65
RFX3-202ENST00000358730 PLEKHF1Q96S99 279 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms