RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 CGNL1Q0VF96 1302 aa12.6□□□□□ -0.39
RNF40-202ENST00000357890 ADGRF5Q8IZF2 1346 aa12.59□□□□□ -0.39
RNF40-202ENST00000357890 FANCAO15360 1455 aa12.59□□□□□ -0.39
RNF40-202ENST00000357890 GOLGA6L22H0YM25 854 aa12.59□□□□□ -0.39
RNF40-202ENST00000357890 NUTM2DQ5VT03 806 aaPredicted RBP12.59□□□□□ -0.39
RNF40-202ENST00000357890 ASXL1Q8IXJ9 1541 aa12.59□□□□□ -0.39
RNF40-202ENST00000357890 RIMBP3CA6NJZ7 1639 aa12.58□□□□□ -0.4
RNF40-202ENST00000357890 RIMBP3BA6NNM3 1639 aa12.58□□□□□ -0.4
RNF40-202ENST00000357890 RIMBP3Q9UFD9 1639 aa12.58□□□□□ -0.4
RNF40-202ENST00000357890 PLEKHH1Q9ULM0 1364 aa12.58□□□□□ -0.4
RNF40-202ENST00000357890 ADGRL1O94910 1474 aa12.57□□□□□ -0.4
RNF40-202ENST00000357890 ZMYM4Q5VZL5 1548 aa12.57□□□□□ -0.4
RNF40-202ENST00000357890 MAGI2Q86UL8 1455 aa12.57□□□□□ -0.4
RNF40-202ENST00000357890 TRAK2O60296 914 aa12.57□□□□□ -0.4
RNF40-202ENST00000357890 ESPNB1AK53 854 aa12.56□□□□□ -0.4
RNF40-202ENST00000357890 PMFBP1Q8TBY8 1022 aa12.56□□□□□ -0.4
RNF40-202ENST00000357890 RWDD1Q9H446 243 aaPredicted RBP12.56□□□□□ -0.4
RNF40-202ENST00000357890 STAG3Q9UJ98 1225 aa12.56□□□□□ -0.4
RNF40-202ENST00000357890 MAPK8IP3Q9UPT6 1336 aa12.56□□□□□ -0.4
RNF40-202ENST00000357890 PIK3C2GO75747 1445 aa12.56□□□□□ -0.4
RNF40-202ENST00000357890 TMEM132EQ6IEE7 984 aa12.56□□□□□ -0.4
RNF40-202ENST00000357890 SLC12A5Q9H2X9 1139 aa12.55□□□□□ -0.4
RNF40-202ENST00000357890 ABCC1P33527 1531 aa12.55□□□□□ -0.4
RNF40-202ENST00000357890 NPC1L1Q9UHC9 1359 aa12.55□□□□□ -0.4
RNF40-202ENST00000357890 RUNDC1Q96C34 613 aa12.55□□□□□ -0.4
RNF40-202ENST00000357890 R3HCC1Q9Y3T6 440 aaKnown RBP12.55□□□□□ -0.4
RNF40-202ENST00000357890 VGFO15240 615 aaPredicted RBP12.54□□□□□ -0.4
RNF40-202ENST00000357890 XRCC6P12956 609 aaKnown RBP eCLIP12.54□□□□□ -0.4
RNF40-202ENST00000357890 SRPK2P78362 688 aaKnown RBP12.54□□□□□ -0.4
RNF40-202ENST00000357890 STK26Q9P289 416 aa12.54□□□□□ -0.4
RNF40-202ENST00000357890 MRE11P49959 708 aa12.54□□□□□ -0.4
RNF40-202ENST00000357890 KIAA1211Q6ZU35 1233 aa12.54□□□□□ -0.4
RNF40-202ENST00000357890 TCP11L2Q8N4U5 519 aa12.54□□□□□ -0.4
RNF40-202ENST00000357890 EVC2Q86UK5 1308 aa12.54□□□□□ -0.4
RNF40-202ENST00000357890 LAMC1P11047 1609 aa12.54□□□□□ -0.4
RNF40-202ENST00000357890 ITPRIPQ8IWB1 547 aa12.54□□□□□ -0.4
RNF40-202ENST00000357890 SPINK5Q9NQ38 1064 aaPredicted RBP12.54□□□□□ -0.4
RNF40-202ENST00000357890 SMC4Q9NTJ3 1288 aa12.53□□□□□ -0.4
RNF40-202ENST00000357890 PDE3AQ14432 1141 aa12.53□□□□□ -0.4
RNF40-202ENST00000357890 NKTRP30414 1462 aaKnown RBP12.53□□□□□ -0.4
RNF40-202ENST00000357890 IGHDP01880 384 aa12.53□□□□□ -0.4
RNF40-202ENST00000357890 C8orf34Q49A92 452 aa12.53□□□□□ -0.4
RNF40-202ENST00000357890 ARAP3Q8WWN8 1544 aa12.53□□□□□ -0.4
RNF40-202ENST00000357890 E9PCH4 1651 aa12.52□□□□□ -0.4
RNF40-202ENST00000357890 TRPM2O94759 1503 aa12.52□□□□□ -0.41
RNF40-202ENST00000357890 MTHFSP49914 203 aa12.52□□□□□ -0.41
RNF40-202ENST00000357890 PRDM10Q9NQV6 1147 aa12.52□□□□□ -0.41
RNF40-202ENST00000357890 PTPRTO14522 1441 aa12.52□□□□□ -0.41
RNF40-202ENST00000357890 WWC1Q8IX03 1113 aa12.52□□□□□ -0.41
RNF40-202ENST00000357890 PLCB2Q00722 1185 aa12.51□□□□□ -0.41
RNF40-202ENST00000357890 CARD14Q9BXL6 1004 aa12.51□□□□□ -0.41
RNF40-202ENST00000357890 GBP4Q96PP9 640 aa12.51□□□□□ -0.41
RNF40-202ENST00000357890 NSD3Q9BZ95 1437 aa12.51□□□□□ -0.41
RNF40-202ENST00000357890 GRPEL1Q9HAV7 217 aa12.51□□□□□ -0.41
RNF40-202ENST00000357890 ESF1Q9H501 851 aaKnown RBP12.5□□□□□ -0.41
RNF40-202ENST00000357890 ATP7AQ04656 1500 aa12.5□□□□□ -0.41
RNF40-202ENST00000357890 MCM4P33991 863 aa12.5□□□□□ -0.41
RNF40-202ENST00000357890 NOS1P29475 1434 aa12.5□□□□□ -0.41
RNF40-202ENST00000357890 CHMP5Q9NZZ3 219 aa12.5□□□□□ -0.41
RNF40-202ENST00000357890 RPGRIP1LQ68CZ1 1315 aa12.49□□□□□ -0.41
RNF40-202ENST00000357890 KDM2BQ8NHM5 1336 aa12.49□□□□□ -0.41
RNF40-202ENST00000357890 ZNF521Q96K83 1311 aa12.49□□□□□ -0.41
RNF40-202ENST00000357890 DDX11L8A8MPP1 907 aa12.49□□□□□ -0.41
RNF40-202ENST00000357890 CLCN1P35523 988 aa12.49□□□□□ -0.41
RNF40-202ENST00000357890 NEO1Q92859 1461 aa12.48□□□□□ -0.41
RNF40-202ENST00000357890 SYNMO15061 1565 aa12.48□□□□□ -0.41
RNF40-202ENST00000357890 C14orf93Q9H972 538 aaKnown RBP12.48□□□□□ -0.41
RNF40-202ENST00000357890 PDZRN3Q9UPQ7 1066 aa12.48□□□□□ -0.41
RNF40-202ENST00000357890 ZKSCAN2Q63HK3 967 aa12.48□□□□□ -0.41
RNF40-202ENST00000357890 ZHX1Q9UKY1 873 aaPredicted RBP12.48□□□□□ -0.41
RNF40-202ENST00000357890 NINLQ9Y2I6 1382 aa12.48□□□□□ -0.41
RNF40-202ENST00000357890 TPM2P07951 284 aa12.47□□□□□ -0.41
RNF40-202ENST00000357890 CDK11BP21127 795 aaKnown RBP12.47□□□□□ -0.41
RNF40-202ENST00000357890 DNAJC5Q9H3Z4 198 aa12.47□□□□□ -0.41
RNF40-202ENST00000357890 TERF2IPQ9NYB0 399 aa12.47□□□□□ -0.41
RNF40-202ENST00000357890 ABCA9Q8IUA7 1624 aa12.47□□□□□ -0.41
RNF40-202ENST00000357890 ZFYVE16Q7Z3T8 1539 aa12.47□□□□□ -0.41
RNF40-202ENST00000357890 DMRT2Q9Y5R5 561 aa12.47□□□□□ -0.41
RNF40-202ENST00000357890 DDX49Q9Y6V7 483 aaKnown RBP12.47□□□□□ -0.41
RNF40-202ENST00000357890 AAMPQ13685 434 aa12.47□□□□□ -0.41
RNF40-202ENST00000357890 ZNF518AQ6AHZ1 1483 aa12.47□□□□□ -0.41
RNF40-202ENST00000357890 POLR3AO14802 1390 aaPredicted RBP12.46□□□□□ -0.41
RNF40-202ENST00000357890 RAPGEF3O95398 923 aa12.46□□□□□ -0.41
RNF40-202ENST00000357890 WDR63Q8IWG1 891 aa12.46□□□□□ -0.41
RNF40-202ENST00000357890 CABP2Q9NPB3 220 aa12.46□□□□□ -0.41
RNF40-202ENST00000357890 DZIP1LQ8IYY4 767 aaKnown RBP12.46□□□□□ -0.41
RNF40-202ENST00000357890 MADDQ8WXG6 1647 aa12.46□□□□□ -0.41
RNF40-202ENST00000357890 CFAP74Q9C0B2 1584 aa12.46□□□□□ -0.41
RNF40-202ENST00000357890 TSR2Q969E8 191 aaKnown RBP12.45□□□□□ -0.42
RNF40-202ENST00000357890 HDGFL2Q7Z4V5 671 aaPredicted RBP12.45□□□□□ -0.42
RNF40-202ENST00000357890 SEC24BO95487 1268 aa12.44□□□□□ -0.42
RNF40-202ENST00000357890 RARSP54136 660 aaKnown RBP12.44□□□□□ -0.42
RNF40-202ENST00000357890 FOXD4L5Q5VV16 416 aaPredicted RBP12.44□□□□□ -0.42
RNF40-202ENST00000357890 TRMT2AQ8IZ69 625 aaKnown RBP12.44□□□□□ -0.42
RNF40-202ENST00000357890 FOXD4L4Q8WXT5 416 aaPredicted RBP12.44□□□□□ -0.42
RNF40-202ENST00000357890 NASPP49321 788 aaPredicted RBP12.44□□□□□ -0.42
RNF40-202ENST00000357890 CLTCL1P53675 1640 aa12.44□□□□□ -0.42
RNF40-202ENST00000357890 TBC1D2Q9BYX2 928 aa12.43□□□□□ -0.42
RNF40-202ENST00000357890 PDCL3Q9H2J4 239 aa12.43□□□□□ -0.42
RNF40-202ENST00000357890 ERVK-7P63135 1459 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms