RNA–Protein interactions for RNA: ENST00000357732.8

RTN4-204, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,390 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-204ENST00000357732 QRICH2Q9H0J4 1663 aa22.79■■□□□ 1.24
RTN4-204ENST00000357732 CCDC27Q2M243 656 aa22.78■■□□□ 1.24
RTN4-204ENST00000357732 PMFBP1Q8TBY8 1022 aa22.78■■□□□ 1.24
RTN4-204ENST00000357732 PPLO60437 1756 aa22.78■■□□□ 1.24
RTN4-204ENST00000357732 NSD3Q9BZ95 1437 aa22.78■■□□□ 1.24
RTN4-204ENST00000357732 NOS1P29475 1434 aa22.76■■□□□ 1.23
RTN4-204ENST00000357732 IGHDP01880 384 aa22.76■■□□□ 1.23
RTN4-204ENST00000357732 CANXP27824 592 aaKnown RBP22.76■■□□□ 1.23
RTN4-204ENST00000357732 CHGAP10645 457 aaKnown RBP22.76■■□□□ 1.23
RTN4-204ENST00000357732 NSD2O96028 1365 aa22.75■■□□□ 1.23
RTN4-204ENST00000357732 DMRT2Q9Y5R5 561 aa22.75■■□□□ 1.23
RTN4-204ENST00000357732 ADGRB1O14514 1584 aa22.75■■□□□ 1.23
RTN4-204ENST00000357732 SLC4A3P48751 1232 aa22.75■■□□□ 1.23
RTN4-204ENST00000357732 MORC1Q86VD1 984 aa22.75■■□□□ 1.23
RTN4-204ENST00000357732 RPGRIP1LQ68CZ1 1315 aa22.75■■□□□ 1.23
RTN4-204ENST00000357732 ZNF518AQ6AHZ1 1483 aa22.74■■□□□ 1.23
RTN4-204ENST00000357732 BECN1Q14457 450 aa22.73■■□□□ 1.23
RTN4-204ENST00000357732 IL27Q8NEV9 243 aa22.73■■□□□ 1.23
RTN4-204ENST00000357732 USP19O94966 1318 aa22.72■■□□□ 1.23
RTN4-204ENST00000357732 C14orf93Q9H972 538 aaKnown RBP22.72■■□□□ 1.23
RTN4-204ENST00000357732 RARSP54136 660 aaKnown RBP22.72■■□□□ 1.23
RTN4-204ENST00000357732 CFAP53Q96M91 514 aa22.71■■□□□ 1.23
RTN4-204ENST00000357732 TRAK1Q9UPV9 953 aa22.7■■□□□ 1.22
RTN4-204ENST00000357732 COG6Q9Y2V7 657 aa22.7■■□□□ 1.22
RTN4-204ENST00000357732 CFAP74Q9C0B2 1584 aa22.69■■□□□ 1.22
RTN4-204ENST00000357732 CT47B1P0C2W7 299 aaPredicted RBP22.69■■□□□ 1.22
RTN4-204ENST00000357732 NLRP1Q9C000 1473 aa22.69■■□□□ 1.22
RTN4-204ENST00000357732 NPATQ14207 1427 aa22.69■■□□□ 1.22
RTN4-204ENST00000357732 FRAT1Q92837 279 aaPredicted RBP22.68■■□□□ 1.22
RTN4-204ENST00000357732 ADGRB2O60241 1585 aa22.68■■□□□ 1.22
RTN4-204ENST00000357732 GGT6Q6P531 493 aa22.68■■□□□ 1.22
RTN4-204ENST00000357732 TCP11L2Q8N4U5 519 aa22.68■■□□□ 1.22
RTN4-204ENST00000357732 PANK1Q8TE04 598 aa22.68■■□□□ 1.22
RTN4-204ENST00000357732 MYH16Q9H6N6 1097 aa22.67■■□□□ 1.22
RTN4-204ENST00000357732 UPF2Q9HAU5 1272 aaKnown RBP22.66■■□□□ 1.22
RTN4-204ENST00000357732 FRMPD1Q5SYB0 1578 aa22.66■■□□□ 1.22
RTN4-204ENST00000357732 HECW2Q9P2P5 1572 aa22.65■■□□□ 1.22
RTN4-204ENST00000357732 TMEM132EQ6IEE7 984 aa22.65■■□□□ 1.22
RTN4-204ENST00000357732 ANKRD36BQ8N2N9 1353 aa22.64■■□□□ 1.22
RTN4-204ENST00000357732 SLC12A5Q9H2X9 1139 aa22.64■■□□□ 1.22
RTN4-204ENST00000357732 POGZQ7Z3K3 1410 aa22.64■■□□□ 1.22
RTN4-204ENST00000357732 FRAT2O75474 233 aaPredicted RBP22.64■■□□□ 1.21
RTN4-204ENST00000357732 RWDD1Q9H446 243 aaPredicted RBP22.64■■□□□ 1.21
RTN4-204ENST00000357732 MLH3Q9UHC1 1453 aa22.64■■□□□ 1.21
RTN4-204ENST00000357732 TNNT2P45379 298 aaPredicted RBP22.63■■□□□ 1.21
RTN4-204ENST00000357732 GLI2P10070 1586 aa22.62■■□□□ 1.21
RTN4-204ENST00000357732 CD109Q6YHK3 1445 aa22.62■■□□□ 1.21
RTN4-204ENST00000357732 NPM1P06748 294 aaKnown RBP eCLIP22.62■■□□□ 1.21
RTN4-204ENST00000357732 EVC2Q86UK5 1308 aa22.61■■□□□ 1.21
RTN4-204ENST00000357732 ARHGEF28Q8N1W1 1705 aaKnown RBP22.61■■□□□ 1.21
RTN4-204ENST00000357732 CFAP65Q6ZU64 1925 aaKnown RBP22.6■■□□□ 1.21
RTN4-204ENST00000357732 MTHFSP49914 203 aa22.6■■□□□ 1.21
RTN4-204ENST00000357732 PIK3C2BO00750 1634 aa22.59■■□□□ 1.21
RTN4-204ENST00000357732 TBC1D32Q96NH3 1257 aa22.58■■□□□ 1.21
RTN4-204ENST00000357732 PCDHB15Q9Y5E8 787 aa22.57■■□□□ 1.2
RTN4-204ENST00000357732 ABCC3O15438 1527 aa22.57■■□□□ 1.2
RTN4-204ENST00000357732 TULP4Q9NRJ4 1543 aa22.57■■□□□ 1.2
RTN4-204ENST00000357732 MVPQ14764 893 aaKnown RBP22.57■■□□□ 1.2
RTN4-204ENST00000357732 CAMSAP1Q5T5Y3 1602 aa22.57■■□□□ 1.2
RTN4-204ENST00000357732 SEC24BO95487 1268 aa22.56■■□□□ 1.2
RTN4-204ENST00000357732 NUTM2DQ5VT03 806 aaPredicted RBP22.56■■□□□ 1.2
RTN4-204ENST00000357732 RLBP1P12271 317 aa22.55■■□□□ 1.2
RTN4-204ENST00000357732 NEUROD2Q15784 382 aa22.55■■□□□ 1.2
RTN4-204ENST00000357732 BRPF3Q9ULD4 1205 aa22.55■■□□□ 1.2
RTN4-204ENST00000357732 PDZRN3Q9UPQ7 1066 aa22.55■■□□□ 1.2
RTN4-204ENST00000357732 RRP7AQ9Y3A4 280 aaKnown RBP22.55■■□□□ 1.2
RTN4-204ENST00000357732 ZKSCAN2Q63HK3 967 aa22.55■■□□□ 1.2
RTN4-204ENST00000357732 ABCC11Q96J66 1382 aa22.54■■□□□ 1.2
RTN4-204ENST00000357732 MED14O60244 1454 aa22.53■■□□□ 1.2
RTN4-204ENST00000357732 ZFYVE9O95405 1425 aa22.53■■□□□ 1.2
RTN4-204ENST00000357732 NEXMIFQ5QGS0 1516 aa22.53■■□□□ 1.2
RTN4-204ENST00000357732 VGFO15240 615 aaPredicted RBP22.53■■□□□ 1.2
RTN4-204ENST00000357732 ANTXR1Q9H6X2 564 aa22.53■■□□□ 1.2
RTN4-204ENST00000357732 IL16Q14005 1332 aa22.52■■□□□ 1.2
RTN4-204ENST00000357732 ANKRD26Q9UPS8 1709 aa22.51■■□□□ 1.19
RTN4-204ENST00000357732 DZIP1LQ8IYY4 767 aaKnown RBP22.51■■□□□ 1.19
RTN4-204ENST00000357732 RAPGEF3O95398 923 aa22.5■■□□□ 1.19
RTN4-204ENST00000357732 HDAC1Q13547 482 aaPredicted RBP22.5■■□□□ 1.19
RTN4-204ENST00000357732 SIGLEC1Q9BZZ2 1709 aa22.5■■□□□ 1.19
RTN4-204ENST00000357732 U2AF1L5P0DN76 240 aaPredicted RBP22.49■■□□□ 1.19
RTN4-204ENST00000357732 U2AF1Q01081 240 aaKnown RBP eCLIP22.49■■□□□ 1.194e-6■□□□□ 9.4
RTN4-204ENST00000357732 ARHGAP31Q2M1Z3 1444 aa22.49■■□□□ 1.19
RTN4-204ENST00000357732 FTSJ3Q8IY81 847 aaKnown RBP22.49■■□□□ 1.19
RTN4-204ENST00000357732 RTN4Q9NQC3 1192 aaKnown RBP22.48■■□□□ 1.19
RTN4-204ENST00000357732 COL3A1P02461 1466 aaPredicted RBP22.48■■□□□ 1.19
RTN4-204ENST00000357732 DDX19BQ9UMR2 479 aa22.48■■□□□ 1.19
RTN4-204ENST00000357732 L1TD1Q5T7N2 865 aaKnown RBP22.47■■□□□ 1.19
RTN4-204ENST00000357732 FAM43AQ8N2R8 423 aa22.46■■□□□ 1.19
RTN4-204ENST00000357732 CLTCQ00610 1675 aaKnown RBP22.45■■□□□ 1.19
RTN4-204ENST00000357732 TBC1D2Q9BYX2 928 aa22.45■■□□□ 1.18
RTN4-204ENST00000357732 PNNQ9H307 717 aaKnown RBP22.45■■□□□ 1.18
RTN4-204ENST00000357732 CABP2Q9NPB3 220 aa22.45■■□□□ 1.18
RTN4-204ENST00000357732 ATAD2Q6PL18 1390 aa22.45■■□□□ 1.18
RTN4-204ENST00000357732 OSCARQ8IYS5 282 aa22.45■■□□□ 1.18
RTN4-204ENST00000357732 PLEKHF1Q96S99 279 aa22.45■■□□□ 1.18
RTN4-204ENST00000357732 SAFB2Q14151 953 aaKnown RBP eCLIP22.44■■□□□ 1.188e-8■■■□□ 19.2
RTN4-204ENST00000357732 BCL2L13Q9BXK5 485 aa22.44■■□□□ 1.18
RTN4-204ENST00000357732 TNNQ9UQP3 1299 aa22.44■■□□□ 1.18
RTN4-204ENST00000357732 SENP3Q9H4L4 574 aaPredicted RBP22.43■■□□□ 1.18
RTN4-204ENST00000357732 A0A1W2PP64 1363 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms