RNA–Protein interactions for RNA: ENST00000354822.6

NKX2-1-201, Transcript of NK2 homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene NKX2-1, Length 2,191 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1-201ENST00000354822 PLIN1O60240 522 aa29.23■■■□□ 2.27
NKX2-1-201ENST00000354822 MORC1Q86VD1 984 aa29.23■■■□□ 2.27
NKX2-1-201ENST00000354822 TCERG1O14776 1098 aaKnown RBP29.22■■■□□ 2.27
NKX2-1-201ENST00000354822 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.22■■■□□ 2.27
NKX2-1-201ENST00000354822 CLTCQ00610 1675 aaKnown RBP29.21■■■□□ 2.27
NKX2-1-201ENST00000354822 USP32Q8NFA0 1604 aa29.21■■■□□ 2.27
NKX2-1-201ENST00000354822 APAF1O14727 1248 aa29.2■■■□□ 2.27
NKX2-1-201ENST00000354822 CCDC146Q8IYE0 955 aa29.2■■■□□ 2.27
NKX2-1-201ENST00000354822 NUTM2DQ5VT03 806 aaPredicted RBP29.2■■■□□ 2.26
NKX2-1-201ENST00000354822 ERICH6Q7L0X2 663 aa29.19■■■□□ 2.26
NKX2-1-201ENST00000354822 FBXO31Q5XUX0 539 aaPredicted RBP29.19■■■□□ 2.26
NKX2-1-201ENST00000354822 CRBNQ96SW2 442 aa29.19■■■□□ 2.26
NKX2-1-201ENST00000354822 CGNL1Q0VF96 1302 aa29.19■■■□□ 2.26
NKX2-1-201ENST00000354822 ARHGEF28Q8N1W1 1705 aaKnown RBP29.18■■■□□ 2.26
NKX2-1-201ENST00000354822 E9PSI1 815 aa29.17■■■□□ 2.26
NKX2-1-201ENST00000354822 NSD2O96028 1365 aa29.15■■■□□ 2.26
NKX2-1-201ENST00000354822 ANKRD36BQ8N2N9 1353 aa29.14■■■□□ 2.26
NKX2-1-201ENST00000354822 MS4A1P11836 297 aa29.14■■■□□ 2.26
NKX2-1-201ENST00000354822 SPATA31D1Q6ZQQ2 1576 aa29.13■■■□□ 2.25
NKX2-1-201ENST00000354822 NKTRP30414 1462 aaKnown RBP29.13■■■□□ 2.25
NKX2-1-201ENST00000354822 NINLQ9Y2I6 1382 aa29.12■■■□□ 2.25
NKX2-1-201ENST00000354822 TULP4Q9NRJ4 1543 aa29.11■■■□□ 2.25
NKX2-1-201ENST00000354822 ANP32AP39687 249 aaKnown RBP29.09■■■□□ 2.25
NKX2-1-201ENST00000354822 CFAP53Q96M91 514 aa29.09■■■□□ 2.25
NKX2-1-201ENST00000354822 MLECQ14165 292 aa29.07■■■□□ 2.24
NKX2-1-201ENST00000354822 C20orf194Q5TEA3 1177 aa29.07■■■□□ 2.24
NKX2-1-201ENST00000354822 RUNDC1Q96C34 613 aa29.06■■■□□ 2.24
NKX2-1-201ENST00000354822 STAG3Q9UJ98 1225 aa29.05■■■□□ 2.24
NKX2-1-201ENST00000354822 SPINK5Q9NQ38 1064 aaPredicted RBP29.05■■■□□ 2.24
NKX2-1-201ENST00000354822 SHPRHQ149N8 1683 aa29.04■■■□□ 2.24
NKX2-1-201ENST00000354822 MTHFSP49914 203 aa29.03■■■□□ 2.24
NKX2-1-201ENST00000354822 WWC1Q8IX03 1113 aa29.03■■■□□ 2.24
NKX2-1-201ENST00000354822 CABP2Q9NPB3 220 aa29.03■■■□□ 2.24
NKX2-1-201ENST00000354822 TNNT2P45379 298 aaPredicted RBP29.03■■■□□ 2.24
NKX2-1-201ENST00000354822 NCBP3Q53F19 620 aaKnown RBP29.03■■■□□ 2.24
NKX2-1-201ENST00000354822 A2ML1A8K2U0 1454 aa29.01■■■□□ 2.24
NKX2-1-201ENST00000354822 STK26Q9P289 416 aa29.01■■■□□ 2.23
NKX2-1-201ENST00000354822 ATAD2Q6PL18 1390 aa29.01■■■□□ 2.23
NKX2-1-201ENST00000354822 CENPQQ7L2Z9 268 aaPredicted RBP29■■■□□ 2.23
NKX2-1-201ENST00000354822 ALKQ9UM73 1620 aa29■■■□□ 2.23
NKX2-1-201ENST00000354822 YTHDC2Q9H6S0 1430 aaKnown RBP28.99■■■□□ 2.23
NKX2-1-201ENST00000354822 PDE4AP27815 886 aa28.99■■■□□ 2.23
NKX2-1-201ENST00000354822 IPO9Q96P70 1041 aaKnown RBP28.99■■■□□ 2.23
NKX2-1-201ENST00000354822 PTPRMP28827 1452 aa28.98■■■□□ 2.23
NKX2-1-201ENST00000354822 SRPK2P78362 688 aaKnown RBP28.98■■■□□ 2.23
NKX2-1-201ENST00000354822 NOP58Q9Y2X3 529 aaKnown RBP28.98■■■□□ 2.23
NKX2-1-201ENST00000354822 KDM2BQ8NHM5 1336 aa28.98■■■□□ 2.23
NKX2-1-201ENST00000354822 ESF1Q9H501 851 aaKnown RBP28.98■■■□□ 2.23
NKX2-1-201ENST00000354822 ABCC11Q96J66 1382 aa28.97■■■□□ 2.23
NKX2-1-201ENST00000354822 SAFB2Q14151 953 aaKnown RBP eCLIP28.96■■■□□ 2.23
NKX2-1-201ENST00000354822 BACH2Q9BYV9 841 aa28.96■■■□□ 2.23
NKX2-1-201ENST00000354822 POGKQ9P215 609 aa28.96■■■□□ 2.23
NKX2-1-201ENST00000354822 CCDC27Q2M243 656 aa28.96■■■□□ 2.23
NKX2-1-201ENST00000354822 WDR63Q8IWG1 891 aa28.96■■■□□ 2.23
NKX2-1-201ENST00000354822 TERF2IPQ9NYB0 399 aa28.96■■■□□ 2.23
NKX2-1-201ENST00000354822 PHF23Q9BUL5 403 aaPredicted RBP28.95■■■□□ 2.23
NKX2-1-201ENST00000354822 ZMYM3Q14202 1370 aa28.95■■■□□ 2.23
NKX2-1-201ENST00000354822 TCP11L2Q8N4U5 519 aa28.95■■■□□ 2.22
NKX2-1-201ENST00000354822 RIMS2Q9UQ26 1411 aa28.94■■■□□ 2.22
NKX2-1-201ENST00000354822 PRAM1Q96QH2 718 aa28.94■■■□□ 2.22
NKX2-1-201ENST00000354822 DMRT2Q9Y5R5 561 aa28.94■■■□□ 2.22
NKX2-1-201ENST00000354822 A0A1W2PP64 1363 aa28.93■■■□□ 2.22
NKX2-1-201ENST00000354822 IQSEC2Q5JU85 1478 aa28.93■■■□□ 2.22
NKX2-1-201ENST00000354822 PDE3AQ14432 1141 aa28.91■■■□□ 2.22
NKX2-1-201ENST00000354822 SENP3Q9H4L4 574 aaPredicted RBP28.91■■■□□ 2.22
NKX2-1-201ENST00000354822 BCAR3O75815 825 aa28.91■■■□□ 2.22
NKX2-1-201ENST00000354822 MED14O60244 1454 aa28.89■■■□□ 2.22
NKX2-1-201ENST00000354822 MINK1Q8N4C8 1332 aaPredicted RBP28.88■■■□□ 2.21
NKX2-1-201ENST00000354822 SETD1AO15047 1707 aaKnown RBP28.87■■■□□ 2.21
NKX2-1-201ENST00000354822 ZBTB47Q9UFB7 747 aaPredicted RBP28.86■■■□□ 2.21
NKX2-1-201ENST00000354822 NEUROD2Q15784 382 aa28.86■■■□□ 2.21
NKX2-1-201ENST00000354822 HDGFL2Q7Z4V5 671 aaPredicted RBP28.85■■■□□ 2.21
NKX2-1-201ENST00000354822 DLC1Q96QB1 1528 aa28.85■■■□□ 2.21
NKX2-1-201ENST00000354822 U2AF1L5P0DN76 240 aaPredicted RBP28.85■■■□□ 2.21
NKX2-1-201ENST00000354822 U2AF1Q01081 240 aaKnown RBP eCLIP28.85■■■□□ 2.21
NKX2-1-201ENST00000354822 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.84■■■□□ 2.21
NKX2-1-201ENST00000354822 RRP7AQ9Y3A4 280 aaKnown RBP28.84■■■□□ 2.21
NKX2-1-201ENST00000354822 CDK19Q9BWU1 502 aa28.83■■■□□ 2.21
NKX2-1-201ENST00000354822 TNRQ92752 1358 aa28.83■■■□□ 2.21
NKX2-1-201ENST00000354822 FYB1O15117 783 aa28.82■■■□□ 2.2
NKX2-1-201ENST00000354822 CD163L1Q9NR16 1453 aa28.81■■■□□ 2.2
NKX2-1-201ENST00000354822 MYH16Q9H6N6 1097 aa28.81■■■□□ 2.2
NKX2-1-201ENST00000354822 AAMPQ13685 434 aa28.8■■■□□ 2.2
NKX2-1-201ENST00000354822 GGNBP2Q9H3C7 697 aa28.8■■■□□ 2.2
NKX2-1-201ENST00000354822 ANKRD26Q9UPS8 1709 aa28.8■■■□□ 2.2
NKX2-1-201ENST00000354822 CANXP27824 592 aaKnown RBP28.79■■■□□ 2.2
NKX2-1-201ENST00000354822 NRXN3Q9Y4C0 1643 aa28.79■■■□□ 2.2
NKX2-1-201ENST00000354822 PAK3O75914 559 aaPredicted RBP28.78■■■□□ 2.2
NKX2-1-201ENST00000354822 RARSP54136 660 aaKnown RBP28.78■■■□□ 2.2
NKX2-1-201ENST00000354822 ADGRB2O60241 1585 aa28.77■■■□□ 2.2
NKX2-1-201ENST00000354822 HDGFP51858 240 aaKnown RBP28.77■■■□□ 2.2
NKX2-1-201ENST00000354822 NLRP1Q9C000 1473 aa28.76■■■□□ 2.19
NKX2-1-201ENST00000354822 PNNQ9H307 717 aaKnown RBP28.75■■■□□ 2.19
NKX2-1-201ENST00000354822 CABP1Q9NZU7 370 aa28.74■■■□□ 2.19
NKX2-1-201ENST00000354822 COL3A1P02461 1466 aaPredicted RBP28.74■■■□□ 2.19
NKX2-1-201ENST00000354822 CT47B1P0C2W7 299 aaPredicted RBP28.74■■■□□ 2.19
NKX2-1-201ENST00000354822 UBR1Q8IWV7 1749 aa28.74■■■□□ 2.19
NKX2-1-201ENST00000354822 NPM2Q86SE8 214 aaKnown RBP28.73■■■□□ 2.19
NKX2-1-201ENST00000354822 PLEKHF1Q96S99 279 aa28.72■■■□□ 2.19
NKX2-1-201ENST00000354822 CLUAP1Q96AJ1 413 aa28.71■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms