RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 SOS2Q07890 1332 aaPredicted RBP17.15■□□□□ 0.34
RTN3-204ENST00000354497 SRCAPQ6ZRS2 3230 aa17.15■□□□□ 0.34
RTN3-204ENST00000354497 FNBP4Q8N3X1 1017 aaPredicted RBP17.14■□□□□ 0.33
RTN3-204ENST00000354497 SPHKAPQ2M3C7 1700 aa17.14■□□□□ 0.33
RTN3-204ENST00000354497 ROCK1Q13464 1354 aa17.14■□□□□ 0.33
RTN3-204ENST00000354497 CCDC125Q86Z20 511 aa17.12■□□□□ 0.33
RTN3-204ENST00000354497 LAMC1P11047 1609 aa17.11■□□□□ 0.33
RTN3-204ENST00000354497 NEXMIFQ5QGS0 1516 aa17.11■□□□□ 0.33
RTN3-204ENST00000354497 ROBO2Q9HCK4 1378 aa17.11■□□□□ 0.33
RTN3-204ENST00000354497 XPCQ01831 940 aaPredicted RBP17.09■□□□□ 0.33
RTN3-204ENST00000354497 CLTCL1P53675 1640 aa17.09■□□□□ 0.33
RTN3-204ENST00000354497 COL22A1Q8NFW1 1626 aaPredicted RBP17.09■□□□□ 0.33
RTN3-204ENST00000354497 ESCO1Q5FWF5 840 aa17.08■□□□□ 0.32
RTN3-204ENST00000354497 GJD4Q96KN9 370 aaPredicted RBP17.07■□□□□ 0.32
RTN3-204ENST00000354497 MYOM2P54296 1465 aa17.07■□□□□ 0.32
RTN3-204ENST00000354497 BCL9LQ86UU0 1499 aa17.07■□□□□ 0.32
RTN3-204ENST00000354497 NPHP3Q7Z494 1330 aa17.06■□□□□ 0.32
RTN3-204ENST00000354497 SF3B2Q13435 895 aaKnown RBP17.04■□□□□ 0.32
RTN3-204ENST00000354497 BLMP54132 1417 aaPredicted RBP17.04■□□□□ 0.32
RTN3-204ENST00000354497 DEFB132Q7Z7B7 95 aa17.04■□□□□ 0.32
RTN3-204ENST00000354497 HFM1A2PYH4 1435 aa17.03■□□□□ 0.32
RTN3-204ENST00000354497 NUTM2FA1L443 756 aa17.03■□□□□ 0.32
RTN3-204ENST00000354497 VGFO15240 615 aaPredicted RBP17.03■□□□□ 0.32
RTN3-204ENST00000354497 FOXO3O43524 673 aa17.03■□□□□ 0.32
RTN3-204ENST00000354497 DCAF8L1A6NGE4 600 aa17.02■□□□□ 0.31
RTN3-204ENST00000354497 MARF1Q9Y4F3 1742 aaKnown RBP17.02■□□□□ 0.31
RTN3-204ENST00000354497 RALGAPBQ86X10 1494 aa17.02■□□□□ 0.31
RTN3-204ENST00000354497 PXDNQ92626 1479 aa17.02■□□□□ 0.31
RTN3-204ENST00000354497 KIF1BO60333 1816 aa17.02■□□□□ 0.31
RTN3-204ENST00000354497 PLEKHG5O94827 1062 aa17.01■□□□□ 0.31
RTN3-204ENST00000354497 UNC5CLQ8IV45 518 aa17.01■□□□□ 0.31
RTN3-204ENST00000354497 EP400Q96L91 3159 aa17■□□□□ 0.31
RTN3-204ENST00000354497 GLI3P10071 1580 aa16.99■□□□□ 0.31
RTN3-204ENST00000354497 LRPPRCP42704 1394 aaKnown RBP16.99■□□□□ 0.31
RTN3-204ENST00000354497 HAP1P54257 671 aaPredicted RBP16.99■□□□□ 0.31
RTN3-204ENST00000354497 CCDC9Q9Y3X0 531 aaKnown RBP16.99■□□□□ 0.31
RTN3-204ENST00000354497 CDC42BPGQ6DT37 1551 aa16.99■□□□□ 0.31
RTN3-204ENST00000354497 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.97■□□□□ 0.31
RTN3-204ENST00000354497 PSDA5PKW4 1024 aaPredicted RBP16.96■□□□□ 0.31
RTN3-204ENST00000354497 SEPT12Q8IYM1 358 aa16.96■□□□□ 0.31
RTN3-204ENST00000354497 STK26Q9P289 416 aa16.96■□□□□ 0.31
RTN3-204ENST00000354497 NAIPQ13075 1403 aa16.96■□□□□ 0.3
RTN3-204ENST00000354497 PRAG1Q86YV5 1406 aa16.96■□□□□ 0.3
RTN3-204ENST00000354497 A0A0G2JS52 829 aa16.96■□□□□ 0.3
RTN3-204ENST00000354497 PPARGC1BQ86YN6 1023 aaKnown RBP16.96■□□□□ 0.3
RTN3-204ENST00000354497 SLIT2O94813 1529 aa16.95■□□□□ 0.3
RTN3-204ENST00000354497 RPGRIP1LQ68CZ1 1315 aa16.94■□□□□ 0.3
RTN3-204ENST00000354497 LRP5O75197 1615 aa16.93■□□□□ 0.3
RTN3-204ENST00000354497 WAPLQ7Z5K2 1190 aa16.93■□□□□ 0.3
RTN3-204ENST00000354497 BRWD3Q6RI45 1802 aa16.93■□□□□ 0.3
RTN3-204ENST00000354497 KRT27Q7Z3Y8 459 aa16.92■□□□□ 0.3
RTN3-204ENST00000354497 USP32Q8NFA0 1604 aa16.92■□□□□ 0.3
RTN3-204ENST00000354497 SPATA31A3Q5VYP0 1347 aa16.92■□□□□ 0.3
RTN3-204ENST00000354497 LMOD2Q6P5Q4 547 aa16.91■□□□□ 0.3
RTN3-204ENST00000354497 KRT28Q7Z3Y7 464 aa16.91■□□□□ 0.3
RTN3-204ENST00000354497 VPS72Q15906 364 aa16.9■□□□□ 0.3
RTN3-204ENST00000354497 CABLES1Q8TDN4 633 aa16.9■□□□□ 0.3
RTN3-204ENST00000354497 CCDC144AA2RUR9 1427 aa16.9■□□□□ 0.3
RTN3-204ENST00000354497 PPLO60437 1756 aa16.9■□□□□ 0.3
RTN3-204ENST00000354497 BAG6P46379 1132 aa16.89■□□□□ 0.29
RTN3-204ENST00000354497 PLEKHH1Q9ULM0 1364 aa16.88■□□□□ 0.29
RTN3-204ENST00000354497 HRCP23327 699 aa16.87■□□□□ 0.29
RTN3-204ENST00000354497 KIF1AQ12756 1690 aa16.87■□□□□ 0.29
RTN3-204ENST00000354497 PLCH1Q4KWH8 1693 aa16.86■□□□□ 0.29
RTN3-204ENST00000354497 TNS3Q68CZ2 1445 aa16.86■□□□□ 0.29
RTN3-204ENST00000354497 ADGRF5Q8IZF2 1346 aa16.86■□□□□ 0.29
RTN3-204ENST00000354497 PSME1Q06323 249 aa16.86■□□□□ 0.29
RTN3-204ENST00000354497 TMEM132EQ6IEE7 984 aa16.86■□□□□ 0.29
RTN3-204ENST00000354497 SLC4A1APQ9BWU0 796 aaKnown RBP16.86■□□□□ 0.29
RTN3-204ENST00000354497 FMN2Q9NZ56 1722 aa16.85■□□□□ 0.29
RTN3-204ENST00000354497 RRBP1Q9P2E9 1410 aaKnown RBP16.84■□□□□ 0.29
RTN3-204ENST00000354497 FAM98CQ17RN3 349 aaKnown RBP16.84■□□□□ 0.29
RTN3-204ENST00000354497 RGL3Q3MIN7 710 aa16.84■□□□□ 0.29
RTN3-204ENST00000354497 PHF8Q9UPP1 1060 aa16.84■□□□□ 0.29
RTN3-204ENST00000354497 EN1Q05925 392 aaPredicted RBP16.83■□□□□ 0.28
RTN3-204ENST00000354497 TECPR2O15040 1411 aa16.83■□□□□ 0.28
RTN3-204ENST00000354497 R3HDM1Q15032 1099 aaKnown RBP16.82■□□□□ 0.28
RTN3-204ENST00000354497 ONECUT3O60422 494 aaPredicted RBP16.81■□□□□ 0.28
RTN3-204ENST00000354497 FAM182BQ5T319 152 aa16.81■□□□□ 0.28
RTN3-204ENST00000354497 NWD2Q9ULI1 1742 aa16.81■□□□□ 0.28
RTN3-204ENST00000354497 ABCC11Q96J66 1382 aa16.81■□□□□ 0.28
RTN3-204ENST00000354497 FAM83GA6ND36 823 aa16.79■□□□□ 0.28
RTN3-204ENST00000354497 ARHGEF10O15013 1369 aa16.79■□□□□ 0.28
RTN3-204ENST00000354497 KNDC1Q76NI1 1749 aa16.79■□□□□ 0.28
RTN3-204ENST00000354497 BTG4Q9NY30 223 aa16.79■□□□□ 0.28
RTN3-204ENST00000354497 ABCA3Q99758 1704 aa16.78■□□□□ 0.28
RTN3-204ENST00000354497 YTHDC2Q9H6S0 1430 aaKnown RBP16.78■□□□□ 0.28
RTN3-204ENST00000354497 IFT172Q9UG01 1749 aa16.78■□□□□ 0.28
RTN3-204ENST00000354497 SAFB2Q14151 953 aaKnown RBP eCLIP16.78■□□□□ 0.281e-7■■■■□ 23.5
RTN3-204ENST00000354497 SBNO1A3KN83 1393 aa16.78■□□□□ 0.28
RTN3-204ENST00000354497 PMFBP1Q8TBY8 1022 aa16.77■□□□□ 0.27
RTN3-204ENST00000354497 RGPD1P0DJD0 1748 aa16.76■□□□□ 0.27
RTN3-204ENST00000354497 ANKRD30BQ9BXX2 1392 aa16.76■□□□□ 0.27
RTN3-204ENST00000354497 RGPD8O14715 1765 aaPredicted RBP16.76■□□□□ 0.27
RTN3-204ENST00000354497 NRXN1Q9ULB1 1477 aa16.75■□□□□ 0.27
RTN3-204ENST00000354497 EZH2Q15910 746 aaKnown RBP16.74■□□□□ 0.27
RTN3-204ENST00000354497 NRAPQ86VF7 1730 aa16.74■□□□□ 0.27
RTN3-204ENST00000354497 PIK3C2GO75747 1445 aa16.73■□□□□ 0.27
RTN3-204ENST00000354497 SPATA31E1Q6ZUB1 1445 aa16.72■□□□□ 0.27
RTN3-204ENST00000354497 YY1P25490 414 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms