RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SMG6Q86US8 1419 aaKnown RBP18.42■□□□□ 0.54
COL17A1-201ENST00000353479 WDR97A6NE52 1622 aa18.42■□□□□ 0.54
COL17A1-201ENST00000353479 XPCQ01831 940 aaPredicted RBP18.42■□□□□ 0.54
COL17A1-201ENST00000353479 WAPLQ7Z5K2 1190 aa18.42■□□□□ 0.54
COL17A1-201ENST00000353479 SULT6B1Q6IMI4 303 aa18.42■□□□□ 0.54
COL17A1-201ENST00000353479 CDCA7LQ96GN5 454 aa18.41■□□□□ 0.54
COL17A1-201ENST00000353479 ATAD2Q6PL18 1390 aa18.41■□□□□ 0.54
COL17A1-201ENST00000353479 PANK1Q8TE04 598 aa18.41■□□□□ 0.54
COL17A1-201ENST00000353479 IFIT2P09913 472 aaKnown RBP18.4■□□□□ 0.54
COL17A1-201ENST00000353479 NUDT16Q96DE0 195 aaKnown RBP18.4■□□□□ 0.54
COL17A1-201ENST00000353479 NUTM2BA6NNL0 878 aaPredicted RBP18.39■□□□□ 0.54
COL17A1-201ENST00000353479 NUTM2EB1AL46 878 aaPredicted RBP18.39■□□□□ 0.54
COL17A1-201ENST00000353479 NUTM2AQ8IVF1 878 aaPredicted RBP18.39■□□□□ 0.54
COL17A1-201ENST00000353479 ST18O60284 1047 aa18.39■□□□□ 0.53
COL17A1-201ENST00000353479 G3BP1Q13283 466 aaKnown RBP eCLIP18.39■□□□□ 0.53
COL17A1-201ENST00000353479 TSHZ2Q9NRE2 1034 aa18.39■□□□□ 0.53
COL17A1-201ENST00000353479 FAM161AQ3B820 660 aa18.39■□□□□ 0.53
COL17A1-201ENST00000353479 DIAPH3Q9NSV4 1193 aa18.39■□□□□ 0.53
COL17A1-201ENST00000353479 RAPGEF6Q8TEU7 1601 aa18.39■□□□□ 0.53
COL17A1-201ENST00000353479 RRS1Q15050 365 aaKnown RBP18.39■□□□□ 0.53
COL17A1-201ENST00000353479 IDI1Q13907 227 aa18.38■□□□□ 0.53
COL17A1-201ENST00000353479 TATP17735 454 aaPredicted RBP18.38■□□□□ 0.53
COL17A1-201ENST00000353479 HTATSF1O43719 755 aaKnown RBP18.37■□□□□ 0.53
COL17A1-201ENST00000353479 CLSTN1O94985 981 aa18.37■□□□□ 0.53
COL17A1-201ENST00000353479 PDE4AP27815 886 aa18.37■□□□□ 0.53
COL17A1-201ENST00000353479 TOM1L2Q6ZVM7 507 aa18.37■□□□□ 0.53
COL17A1-201ENST00000353479 EXOSC9Q06265 439 aaKnown RBP18.37■□□□□ 0.53
COL17A1-201ENST00000353479 ATP10BO94823 1461 aa18.37■□□□□ 0.53
COL17A1-201ENST00000353479 GPATCH8Q9UKJ3 1502 aaKnown RBP18.36■□□□□ 0.53
COL17A1-201ENST00000353479 IPO9Q96P70 1041 aaKnown RBP18.36■□□□□ 0.53
COL17A1-201ENST00000353479 GZF1Q9H116 711 aaPredicted RBP18.36■□□□□ 0.53
COL17A1-201ENST00000353479 CCDC61Q9Y6R9 512 aa18.36■□□□□ 0.53
COL17A1-201ENST00000353479 ADGRF5Q8IZF2 1346 aa18.36■□□□□ 0.53
COL17A1-201ENST00000353479 NRDCO43847 1150 aa18.36■□□□□ 0.53
COL17A1-201ENST00000353479 RBM42Q9BTD8 480 aaKnown RBP18.35■□□□□ 0.53
COL17A1-201ENST00000353479 ASXL2Q76L83 1435 aa18.35■□□□□ 0.53
COL17A1-201ENST00000353479 PIP4K2BP78356 416 aa18.35■□□□□ 0.53
COL17A1-201ENST00000353479 CCDC30Q5VVM6 783 aa18.35■□□□□ 0.53
COL17A1-201ENST00000353479 NSD3Q9BZ95 1437 aa18.34■□□□□ 0.53
COL17A1-201ENST00000353479 VPS37DQ86XT2 251 aa18.34■□□□□ 0.53
COL17A1-201ENST00000353479 TSR2Q969E8 191 aaKnown RBP18.34■□□□□ 0.53
COL17A1-201ENST00000353479 DRC7Q8IY82 874 aa18.34■□□□□ 0.53
COL17A1-201ENST00000353479 UBTFL1P0CB47 393 aaPredicted RBP18.34■□□□□ 0.53
COL17A1-201ENST00000353479 DHX29Q7Z478 1369 aaKnown RBP18.33■□□□□ 0.53
COL17A1-201ENST00000353479 PRDM11Q9NQV5 511 aa18.33■□□□□ 0.53
COL17A1-201ENST00000353479 TWISTNBQ3B726 338 aaPredicted RBP18.33■□□□□ 0.53
COL17A1-201ENST00000353479 DDX54Q8TDD1 881 aaKnown RBP18.33■□□□□ 0.52
COL17A1-201ENST00000353479 FAM135AQ9P2D6 1515 aa18.33■□□□□ 0.52
COL17A1-201ENST00000353479 ZNF530Q6P9A1 599 aaPredicted RBP18.33■□□□□ 0.52
COL17A1-201ENST00000353479 LRRFIP1Q32MZ4 808 aaKnown RBP18.32■□□□□ 0.52
COL17A1-201ENST00000353479 PTMSP20962 102 aa18.32■□□□□ 0.52
COL17A1-201ENST00000353479 FOXD4L5Q5VV16 416 aaPredicted RBP18.32■□□□□ 0.52
COL17A1-201ENST00000353479 FOXD4L4Q8WXT5 416 aaPredicted RBP18.32■□□□□ 0.52
COL17A1-201ENST00000353479 LNPKQ9C0E8 428 aa18.32■□□□□ 0.52
COL17A1-201ENST00000353479 RUFY2Q8WXA3 655 aa18.31■□□□□ 0.52
COL17A1-201ENST00000353479 KIF21AQ7Z4S6 1674 aa18.31■□□□□ 0.52
COL17A1-201ENST00000353479 ZC3H6P61129 1189 aaKnown RBP18.31■□□□□ 0.52
COL17A1-201ENST00000353479 NUP153P49790 1475 aaKnown RBP18.31■□□□□ 0.52
COL17A1-201ENST00000353479 RBM33Q96EV2 1170 aaKnown RBP18.31■□□□□ 0.52
COL17A1-201ENST00000353479 HSP90AB4PQ58FF6 505 aa18.3■□□□□ 0.52
COL17A1-201ENST00000353479 AMOTL2Q9Y2J4 779 aa18.3■□□□□ 0.52
COL17A1-201ENST00000353479 L1TD1Q5T7N2 865 aaKnown RBP18.3■□□□□ 0.52
COL17A1-201ENST00000353479 PNISRQ8TF01 805 aaKnown RBP18.3■□□□□ 0.52
COL17A1-201ENST00000353479 ADAMTS12P58397 1594 aa18.3■□□□□ 0.52
COL17A1-201ENST00000353479 PLCH2O75038 1416 aa18.29■□□□□ 0.52
COL17A1-201ENST00000353479 NOL10Q9BSC4 688 aaKnown RBP18.29■□□□□ 0.52
COL17A1-201ENST00000353479 FAM177BA6PVY3 158 aa18.29■□□□□ 0.52
COL17A1-201ENST00000353479 FBXW7Q969H0 707 aa18.29■□□□□ 0.52
COL17A1-201ENST00000353479 NEUROD6Q96NK8 337 aa18.29■□□□□ 0.52
COL17A1-201ENST00000353479 APPP05067 770 aa18.29■□□□□ 0.52
COL17A1-201ENST00000353479 CABP4P57796 275 aa18.29■□□□□ 0.52
COL17A1-201ENST00000353479 NOS1P29475 1434 aa18.28■□□□□ 0.52
COL17A1-201ENST00000353479 PHF23Q9BUL5 403 aaPredicted RBP18.28■□□□□ 0.52
COL17A1-201ENST00000353479 SPG7Q9UQ90 795 aa18.28■□□□□ 0.52
COL17A1-201ENST00000353479 REC8O95072 547 aa18.28■□□□□ 0.52
COL17A1-201ENST00000353479 KIF3AQ9Y496 699 aa18.28■□□□□ 0.52
COL17A1-201ENST00000353479 KLHL34Q8N239 644 aa18.27■□□□□ 0.52
COL17A1-201ENST00000353479 SYAP1Q96A49 352 aaPredicted RBP18.27■□□□□ 0.52
COL17A1-201ENST00000353479 PPP6R1Q9UPN7 881 aa18.27■□□□□ 0.52
COL17A1-201ENST00000353479 CCDC184Q52MB2 194 aa18.27■□□□□ 0.52
COL17A1-201ENST00000353479 CTTNBP2Q8WZ74 1663 aa18.27■□□□□ 0.51
COL17A1-201ENST00000353479 HDGFL1Q5TGJ6 251 aa18.26■□□□□ 0.51
COL17A1-201ENST00000353479 RASSF8Q8NHQ8 419 aa18.26■□□□□ 0.51
COL17A1-201ENST00000353479 SLC4A2P04920 1241 aa18.26■□□□□ 0.51
COL17A1-201ENST00000353479 SLC4A3P48751 1232 aa18.26■□□□□ 0.51
COL17A1-201ENST00000353479 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.26■□□□□ 0.51
COL17A1-201ENST00000353479 KDM5BQ9UGL1 1544 aa18.25■□□□□ 0.51
COL17A1-201ENST00000353479 ZKSCAN1P17029 563 aaPredicted RBP18.25■□□□□ 0.51
COL17A1-201ENST00000353479 KIF6Q6ZMV9 814 aa18.25■□□□□ 0.51
COL17A1-201ENST00000353479 ANO2Q9NQ90 1003 aa18.25■□□□□ 0.51
COL17A1-201ENST00000353479 NOB1Q9ULX3 412 aaKnown RBP18.25■□□□□ 0.51
COL17A1-201ENST00000353479 GNAI3P08754 354 aa18.24■□□□□ 0.51
COL17A1-201ENST00000353479 AMOTL1Q8IY63 956 aa18.24■□□□□ 0.51
COL17A1-201ENST00000353479 WDR7Q9Y4E6 1490 aa18.24■□□□□ 0.51
COL17A1-201ENST00000353479 H3BQV1 296 aa18.24■□□□□ 0.51
COL17A1-201ENST00000353479 IFFO2Q5TF58 517 aa18.24■□□□□ 0.51
COL17A1-201ENST00000353479 RTN4Q9NQC3 1192 aaKnown RBP18.24■□□□□ 0.51
COL17A1-201ENST00000353479 KIAA0556O60303 1618 aa18.24■□□□□ 0.51
COL17A1-201ENST00000353479 UGGT2Q9NYU1 1516 aa18.24■□□□□ 0.51
COL17A1-201ENST00000353479 ERC2O15083 957 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms