RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 SLIT1O75093 1534 aa11.57□□□□□ -0.56
TRIM55-204ENST00000353317 CARD14Q9BXL6 1004 aa11.56□□□□□ -0.56
TRIM55-204ENST00000353317 CEP170BQ9Y4F5 1589 aaPredicted RBP11.56□□□□□ -0.56
TRIM55-204ENST00000353317 MINK1Q8N4C8 1332 aaPredicted RBP11.56□□□□□ -0.56
TRIM55-204ENST00000353317 SLC12A5Q9H2X9 1139 aa11.56□□□□□ -0.56
TRIM55-204ENST00000353317 CABP2Q9NPB3 220 aa11.56□□□□□ -0.56
TRIM55-204ENST00000353317 CC2D1BQ5T0F9 858 aaKnown RBP11.55□□□□□ -0.56
TRIM55-204ENST00000353317 ERICH6Q7L0X2 663 aa11.55□□□□□ -0.56
TRIM55-204ENST00000353317 MED14O60244 1454 aa11.55□□□□□ -0.56
TRIM55-204ENST00000353317 LRPPRCP42704 1394 aaKnown RBP11.55□□□□□ -0.56
TRIM55-204ENST00000353317 PLEKHG1Q9ULL1 1385 aa11.54□□□□□ -0.56
TRIM55-204ENST00000353317 PTPRUQ92729 1446 aa11.54□□□□□ -0.56
TRIM55-204ENST00000353317 THEMISQ8N1K5 641 aaPredicted RBP11.54□□□□□ -0.56
TRIM55-204ENST00000353317 ABCC11Q96J66 1382 aa11.53□□□□□ -0.56
TRIM55-204ENST00000353317 SMG6Q86US8 1419 aaKnown RBP11.53□□□□□ -0.56
TRIM55-204ENST00000353317 AMER1Q5JTC6 1135 aaPredicted RBP11.53□□□□□ -0.56
TRIM55-204ENST00000353317 CDCA8Q53HL2 280 aa11.53□□□□□ -0.56
TRIM55-204ENST00000353317 POGKQ9P215 609 aa11.53□□□□□ -0.56
TRIM55-204ENST00000353317 HDGFP51858 240 aaKnown RBP11.52□□□□□ -0.57
TRIM55-204ENST00000353317 ZNF142P52746 1687 aaPredicted RBP11.52□□□□□ -0.57
TRIM55-204ENST00000353317 PARD3Q8TEW0 1356 aa11.52□□□□□ -0.57
TRIM55-204ENST00000353317 ROBO2Q9HCK4 1378 aa11.52□□□□□ -0.57
TRIM55-204ENST00000353317 DLC1Q96QB1 1528 aa11.51□□□□□ -0.57
TRIM55-204ENST00000353317 NUDCQ9Y266 331 aa11.51□□□□□ -0.57
TRIM55-204ENST00000353317 EVC2Q86UK5 1308 aa11.51□□□□□ -0.57
TRIM55-204ENST00000353317 TMC1Q8TDI8 760 aa11.51□□□□□ -0.57
TRIM55-204ENST00000353317 EID1Q9Y6B2 187 aa11.51□□□□□ -0.57
TRIM55-204ENST00000353317 KNDC1Q76NI1 1749 aa11.5□□□□□ -0.57
TRIM55-204ENST00000353317 RNF123Q5XPI4 1314 aa11.5□□□□□ -0.57
TRIM55-204ENST00000353317 SENP3-EIF4A1A0A087X0R7 540 aa11.5□□□□□ -0.57
TRIM55-204ENST00000353317 CDK19Q9BWU1 502 aa11.5□□□□□ -0.57
TRIM55-204ENST00000353317 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.5□□□□□ -0.57
TRIM55-204ENST00000353317 NCKAP5LQ9HCH0 1330 aa11.49□□□□□ -0.57
TRIM55-204ENST00000353317 TECPR2O15040 1411 aa11.49□□□□□ -0.57
TRIM55-204ENST00000353317 KDM4FA0A1W2PPD8 638 aa11.49□□□□□ -0.57
TRIM55-204ENST00000353317 KTN1Q86UP2 1357 aaKnown RBP11.48□□□□□ -0.57
TRIM55-204ENST00000353317 SRPK2P78362 688 aaKnown RBP11.48□□□□□ -0.57
TRIM55-204ENST00000353317 PNISRQ8TF01 805 aaKnown RBP11.48□□□□□ -0.57
TRIM55-204ENST00000353317 KNSTRNQ9Y448 316 aa11.48□□□□□ -0.57
TRIM55-204ENST00000353317 CPS1P31327 1500 aa11.48□□□□□ -0.57
TRIM55-204ENST00000353317 SLC24A1O60721 1099 aa11.48□□□□□ -0.57
TRIM55-204ENST00000353317 CD163L1Q9NR16 1453 aa11.47□□□□□ -0.57
TRIM55-204ENST00000353317 RALBP1Q15311 655 aa11.47□□□□□ -0.57
TRIM55-204ENST00000353317 AMOTL2Q9Y2J4 779 aa11.47□□□□□ -0.57
TRIM55-204ENST00000353317 TBX22Q9Y458 520 aa11.47□□□□□ -0.57
TRIM55-204ENST00000353317 MYBBP1AQ9BQG0 1328 aaKnown RBP11.47□□□□□ -0.57
TRIM55-204ENST00000353317 CCDC136Q96JN2 1154 aa11.46□□□□□ -0.58
TRIM55-204ENST00000353317 FAM135BQ49AJ0 1406 aa11.46□□□□□ -0.58
TRIM55-204ENST00000353317 NSD3Q9BZ95 1437 aa11.46□□□□□ -0.58
TRIM55-204ENST00000353317 PUS7Q96PZ0 661 aaKnown RBP11.45□□□□□ -0.58
TRIM55-204ENST00000353317 CABP1Q9NZU7 370 aa11.45□□□□□ -0.58
TRIM55-204ENST00000353317 SIRT1Q96EB6 747 aa11.45□□□□□ -0.58
TRIM55-204ENST00000353317 A0A1W2PP64 1363 aa11.44□□□□□ -0.58
TRIM55-204ENST00000353317 WASLO00401 505 aaPredicted RBP11.44□□□□□ -0.58
TRIM55-204ENST00000353317 KCNA6P17658 529 aa11.44□□□□□ -0.58
TRIM55-204ENST00000353317 ANKLE2Q86XL3 938 aa11.44□□□□□ -0.58
TRIM55-204ENST00000353317 RBM33Q96EV2 1170 aaKnown RBP11.44□□□□□ -0.58
TRIM55-204ENST00000353317 PRR36Q9H6K5 1346 aa11.44□□□□□ -0.58
TRIM55-204ENST00000353317 XRN1Q8IZH2 1706 aaKnown RBP11.43□□□□□ -0.58
TRIM55-204ENST00000353317 PPP2R1AP30153 589 aa11.43□□□□□ -0.58
TRIM55-204ENST00000353317 NOP58Q9Y2X3 529 aaKnown RBP11.43□□□□□ -0.58
TRIM55-204ENST00000353317 CHD2O14647 1828 aaKnown RBP11.43□□□□□ -0.58
TRIM55-204ENST00000353317 NUTM2FA1L443 756 aa11.43□□□□□ -0.58
TRIM55-204ENST00000353317 PAK3O75914 559 aaPredicted RBP11.43□□□□□ -0.58
TRIM55-204ENST00000353317 ANKRD36BQ8N2N9 1353 aa11.43□□□□□ -0.58
TRIM55-204ENST00000353317 RGPD8O14715 1765 aaPredicted RBP11.42□□□□□ -0.58
TRIM55-204ENST00000353317 BRD4O60885 1362 aaPredicted RBP11.42□□□□□ -0.58
TRIM55-204ENST00000353317 NLRP13Q86W25 1043 aa11.42□□□□□ -0.58
TRIM55-204ENST00000353317 NPC1L1Q9UHC9 1359 aa11.42□□□□□ -0.58
TRIM55-204ENST00000353317 DIP2AQ14689 1571 aa11.41□□□□□ -0.58
TRIM55-204ENST00000353317 HSPA2P54652 639 aa11.41□□□□□ -0.58
TRIM55-204ENST00000353317 ATAD2Q6PL18 1390 aa11.41□□□□□ -0.58
TRIM55-204ENST00000353317 NUDT16Q96DE0 195 aaKnown RBP11.4□□□□□ -0.58
TRIM55-204ENST00000353317 TNNT2P45379 298 aaPredicted RBP11.4□□□□□ -0.58
TRIM55-204ENST00000353317 ATP7BP35670 1465 aa11.39□□□□□ -0.59
TRIM55-204ENST00000353317 USP32Q8NFA0 1604 aa11.39□□□□□ -0.59
TRIM55-204ENST00000353317 NPHP4O75161 1426 aaPredicted RBP11.39□□□□□ -0.59
TRIM55-204ENST00000353317 PTCH1Q13635 1447 aa11.39□□□□□ -0.59
TRIM55-204ENST00000353317 ADGRB2O60241 1585 aa11.38□□□□□ -0.59
TRIM55-204ENST00000353317 PPIP5K1Q6PFW1 1433 aa11.38□□□□□ -0.59
TRIM55-204ENST00000353317 FYB1O15117 783 aa11.38□□□□□ -0.59
TRIM55-204ENST00000353317 FBLN1P23142 703 aa11.38□□□□□ -0.59
TRIM55-204ENST00000353317 GGNBP2Q9H3C7 697 aa11.38□□□□□ -0.59
TRIM55-204ENST00000353317 DEKP35659 375 aaKnown RBP11.38□□□□□ -0.59
TRIM55-204ENST00000353317 NBR1Q14596 966 aa11.37□□□□□ -0.59
TRIM55-204ENST00000353317 CPSF1Q10570 1443 aaKnown RBP11.37□□□□□ -0.59
TRIM55-204ENST00000353317 IPO9Q96P70 1041 aaKnown RBP11.37□□□□□ -0.59
TRIM55-204ENST00000353317 ZRANB1Q9UGI0 708 aa11.37□□□□□ -0.59
TRIM55-204ENST00000353317 NKTRP30414 1462 aaKnown RBP11.37□□□□□ -0.59
TRIM55-204ENST00000353317 NINLQ9Y2I6 1382 aa11.36□□□□□ -0.59
TRIM55-204ENST00000353317 ANP32AP39687 249 aaKnown RBP11.36□□□□□ -0.59
TRIM55-204ENST00000353317 RRP1P56182 461 aaKnown RBP11.36□□□□□ -0.59
TRIM55-204ENST00000353317 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.36□□□□□ -0.59
TRIM55-204ENST00000353317 CCDC61Q9Y6R9 512 aa11.36□□□□□ -0.59
TRIM55-204ENST00000353317 NALCNQ8IZF0 1738 aa11.36□□□□□ -0.59
TRIM55-204ENST00000353317 PIK3R4Q99570 1358 aa11.36□□□□□ -0.59
TRIM55-204ENST00000353317 TOPAZ1Q8N9V7 1692 aa11.36□□□□□ -0.59
TRIM55-204ENST00000353317 CGNL1Q0VF96 1302 aa11.36□□□□□ -0.59
TRIM55-204ENST00000353317 MORC1Q86VD1 984 aa11.36□□□□□ -0.59
TRIM55-204ENST00000353317 STRCP1A6NGW2 1772 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms