RNA–Protein interactions for RNA: ENST00000349124.2

PTP4A3-202, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 1 (best) BASIC

Gene PTP4A3, Length 2,710 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-202ENST00000349124 KIAA1210Q9ULL0 1709 aa23.37■■□□□ 1.33
PTP4A3-202ENST00000349124 EFCAB6Q5THR3 1501 aa23.37■■□□□ 1.33
PTP4A3-202ENST00000349124 RARSP54136 660 aaKnown RBP23.37■■□□□ 1.33
PTP4A3-202ENST00000349124 MROH2AA6NES4 1674 aa23.37■■□□□ 1.33
PTP4A3-202ENST00000349124 PPRC1Q5VV67 1664 aaKnown RBP23.36■■□□□ 1.33
PTP4A3-202ENST00000349124 NPATQ14207 1427 aa23.36■■□□□ 1.33
PTP4A3-202ENST00000349124 NRXN1Q9ULB1 1477 aa23.36■■□□□ 1.33
PTP4A3-202ENST00000349124 CGNL1Q0VF96 1302 aa23.35■■□□□ 1.33
PTP4A3-202ENST00000349124 SBNO2Q9Y2G9 1366 aa23.35■■□□□ 1.33
PTP4A3-202ENST00000349124 CABP2Q9NPB3 220 aa23.34■■□□□ 1.33
PTP4A3-202ENST00000349124 PCDHB15Q9Y5E8 787 aa23.34■■□□□ 1.33
PTP4A3-202ENST00000349124 NGEFQ8N5V2 710 aa23.33■■□□□ 1.33
PTP4A3-202ENST00000349124 USP19O94966 1318 aa23.33■■□□□ 1.32
PTP4A3-202ENST00000349124 KIDINS220Q9ULH0 1771 aa23.32■■□□□ 1.32
PTP4A3-202ENST00000349124 KIF1BO60333 1816 aa23.32■■□□□ 1.32
PTP4A3-202ENST00000349124 RTN4Q9NQC3 1192 aaKnown RBP23.32■■□□□ 1.32
PTP4A3-202ENST00000349124 U2AF1L5P0DN76 240 aaPredicted RBP23.31■■□□□ 1.32
PTP4A3-202ENST00000349124 U2AF1Q01081 240 aaKnown RBP eCLIP23.31■■□□□ 1.32
PTP4A3-202ENST00000349124 NEURL4Q96JN8 1562 aa23.3■■□□□ 1.32
PTP4A3-202ENST00000349124 RAPGEF3O95398 923 aa23.3■■□□□ 1.32
PTP4A3-202ENST00000349124 PHF23Q9BUL5 403 aaPredicted RBP23.3■■□□□ 1.32
PTP4A3-202ENST00000349124 STK26Q9P289 416 aa23.3■■□□□ 1.32
PTP4A3-202ENST00000349124 ZNF518AQ6AHZ1 1483 aa23.3■■□□□ 1.32
PTP4A3-202ENST00000349124 FRAT2O75474 233 aaPredicted RBP23.29■■□□□ 1.32
PTP4A3-202ENST00000349124 ADGRB3O60242 1522 aa23.28■■□□□ 1.32
PTP4A3-202ENST00000349124 NPM1P06748 294 aaKnown RBP eCLIP23.26■■□□□ 1.31
PTP4A3-202ENST00000349124 TSR2Q969E8 191 aaKnown RBP23.26■■□□□ 1.31
PTP4A3-202ENST00000349124 ADGRB1O14514 1584 aa23.26■■□□□ 1.31
PTP4A3-202ENST00000349124 WDR63Q8IWG1 891 aa23.25■■□□□ 1.31
PTP4A3-202ENST00000349124 IFT172Q9UG01 1749 aa23.25■■□□□ 1.31
PTP4A3-202ENST00000349124 GSE1Q14687 1217 aa23.25■■□□□ 1.31
PTP4A3-202ENST00000349124 CFAP53Q96M91 514 aa23.25■■□□□ 1.31
PTP4A3-202ENST00000349124 GGNBP2Q9H3C7 697 aa23.24■■□□□ 1.31
PTP4A3-202ENST00000349124 LMTK2Q8IWU2 1503 aa23.23■■□□□ 1.31
PTP4A3-202ENST00000349124 EVC2Q86UK5 1308 aa23.23■■□□□ 1.31
PTP4A3-202ENST00000349124 CD109Q6YHK3 1445 aa23.23■■□□□ 1.31
PTP4A3-202ENST00000349124 PDZRN3Q9UPQ7 1066 aa23.22■■□□□ 1.31
PTP4A3-202ENST00000349124 SHPRHQ149N8 1683 aa23.22■■□□□ 1.31
PTP4A3-202ENST00000349124 U2SURPO15042 1029 aaKnown RBP23.22■■□□□ 1.31
PTP4A3-202ENST00000349124 IDI1Q13907 227 aa23.22■■□□□ 1.31
PTP4A3-202ENST00000349124 MYO3AQ8NEV4 1616 aa23.22■■□□□ 1.31
PTP4A3-202ENST00000349124 IQSEC2Q5JU85 1478 aa23.2■■□□□ 1.3
PTP4A3-202ENST00000349124 BRPF3Q9ULD4 1205 aa23.2■■□□□ 1.3
PTP4A3-202ENST00000349124 RPGRIP1LQ68CZ1 1315 aa23.2■■□□□ 1.3
PTP4A3-202ENST00000349124 FRMPD1Q5SYB0 1578 aa23.2■■□□□ 1.3
PTP4A3-202ENST00000349124 SETBP1Q9Y6X0 1596 aa23.2■■□□□ 1.3
PTP4A3-202ENST00000349124 VGFO15240 615 aaPredicted RBP23.19■■□□□ 1.3
PTP4A3-202ENST00000349124 MAPK8IP3Q9UPT6 1336 aa23.19■■□□□ 1.3
PTP4A3-202ENST00000349124 SRPK2P78362 688 aaKnown RBP23.19■■□□□ 1.3
PTP4A3-202ENST00000349124 QRICH2Q9H0J4 1663 aa23.18■■□□□ 1.3
PTP4A3-202ENST00000349124 CCDC27Q2M243 656 aa23.17■■□□□ 1.3
PTP4A3-202ENST00000349124 POGZQ7Z3K3 1410 aa23.17■■□□□ 1.3
PTP4A3-202ENST00000349124 PMFBP1Q8TBY8 1022 aa23.17■■□□□ 1.3
PTP4A3-202ENST00000349124 ANKRD36BQ8N2N9 1353 aa23.16■■□□□ 1.3
PTP4A3-202ENST00000349124 NINLQ9Y2I6 1382 aa23.16■■□□□ 1.3
PTP4A3-202ENST00000349124 EXOSC9Q06265 439 aaKnown RBP23.16■■□□□ 1.3
PTP4A3-202ENST00000349124 SLKQ9H2G2 1235 aaPredicted RBP23.16■■□□□ 1.3
PTP4A3-202ENST00000349124 MYH16Q9H6N6 1097 aa23.16■■□□□ 1.3
PTP4A3-202ENST00000349124 MINK1Q8N4C8 1332 aaPredicted RBP23.16■■□□□ 1.3
PTP4A3-202ENST00000349124 TULP4Q9NRJ4 1543 aa23.14■■□□□ 1.3
PTP4A3-202ENST00000349124 FBLN1P23142 703 aa23.14■■□□□ 1.3
PTP4A3-202ENST00000349124 PPLO60437 1756 aa23.13■■□□□ 1.29
PTP4A3-202ENST00000349124 A0A1W2PP64 1363 aa23.13■■□□□ 1.29
PTP4A3-202ENST00000349124 MVPQ14764 893 aaKnown RBP23.13■■□□□ 1.29
PTP4A3-202ENST00000349124 PLEKHF1Q96S99 279 aa23.13■■□□□ 1.29
PTP4A3-202ENST00000349124 TRIM35Q9UPQ4 493 aa23.13■■□□□ 1.29
PTP4A3-202ENST00000349124 TMPOP42166 694 aaKnown RBP23.12■■□□□ 1.29
PTP4A3-202ENST00000349124 ABCC3O15438 1527 aa23.12■■□□□ 1.29
PTP4A3-202ENST00000349124 MLH3Q9UHC1 1453 aa23.11■■□□□ 1.29
PTP4A3-202ENST00000349124 FYB1O15117 783 aa23.11■■□□□ 1.29
PTP4A3-202ENST00000349124 ZKSCAN2Q63HK3 967 aa23.11■■□□□ 1.29
PTP4A3-202ENST00000349124 FTSJ3Q8IY81 847 aaKnown RBP23.11■■□□□ 1.29
PTP4A3-202ENST00000349124 DZIP1LQ8IYY4 767 aaKnown RBP23.11■■□□□ 1.29
PTP4A3-202ENST00000349124 RWDD1Q9H446 243 aaPredicted RBP23.11■■□□□ 1.29
PTP4A3-202ENST00000349124 SMC4Q9NTJ3 1288 aa23.11■■□□□ 1.29
PTP4A3-202ENST00000349124 SSH1Q8WYL5 1049 aa23.11■■□□□ 1.29
PTP4A3-202ENST00000349124 PRAM1Q96QH2 718 aa23.1■■□□□ 1.29
PTP4A3-202ENST00000349124 TRIM27P14373 513 aa23.09■■□□□ 1.29
PTP4A3-202ENST00000349124 GLI2P10070 1586 aa23.09■■□□□ 1.29
PTP4A3-202ENST00000349124 ZC3H13Q5T200 1668 aaKnown RBP23.08■■□□□ 1.29
PTP4A3-202ENST00000349124 SPRYD3Q8NCJ5 442 aa23.08■■□□□ 1.28
PTP4A3-202ENST00000349124 PUS7Q96PZ0 661 aaKnown RBP23.07■■□□□ 1.28
PTP4A3-202ENST00000349124 FBXO31Q5XUX0 539 aaPredicted RBP23.07■■□□□ 1.28
PTP4A3-202ENST00000349124 NLRP1Q9C000 1473 aa23.07■■□□□ 1.28
PTP4A3-202ENST00000349124 NOB1Q9ULX3 412 aaKnown RBP23.06■■□□□ 1.28
PTP4A3-202ENST00000349124 SIGLEC1Q9BZZ2 1709 aa23.06■■□□□ 1.28
PTP4A3-202ENST00000349124 RIPK4P57078 832 aa23.06■■□□□ 1.28
PTP4A3-202ENST00000349124 ITPRIPQ8IWB1 547 aa23.06■■□□□ 1.28
PTP4A3-202ENST00000349124 POGKQ9P215 609 aa23.06■■□□□ 1.28
PTP4A3-202ENST00000349124 TBC1D32Q96NH3 1257 aa23.05■■□□□ 1.28
PTP4A3-202ENST00000349124 OSCARQ8IYS5 282 aa23.04■■□□□ 1.28
PTP4A3-202ENST00000349124 TBC1D2Q9BYX2 928 aa23.03■■□□□ 1.28
PTP4A3-202ENST00000349124 ABCC11Q96J66 1382 aa23.03■■□□□ 1.28
PTP4A3-202ENST00000349124 NEXMIFQ5QGS0 1516 aa23.03■■□□□ 1.28
PTP4A3-202ENST00000349124 AAMPQ13685 434 aa23.03■■□□□ 1.28
PTP4A3-202ENST00000349124 CABP1Q9NZU7 370 aa23.03■■□□□ 1.28
PTP4A3-202ENST00000349124 NSD2O96028 1365 aa23.03■■□□□ 1.28
PTP4A3-202ENST00000349124 HECW2Q9P2P5 1572 aa23.03■■□□□ 1.28
PTP4A3-202ENST00000349124 BECN1Q14457 450 aa23.02■■□□□ 1.28
PTP4A3-202ENST00000349124 TMEM57Q8N5G2 664 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms