RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 DEPDC5O75140 1603 aa12.28□□□□□ -0.44
HOXA1-201ENST00000343060 TRAK2O60296 914 aa12.28□□□□□ -0.44
HOXA1-201ENST00000343060 RLBP1P12271 317 aa12.28□□□□□ -0.44
HOXA1-201ENST00000343060 NCBP3Q53F19 620 aaKnown RBP12.28□□□□□ -0.44
HOXA1-201ENST00000343060 PKNOX2Q96KN3 472 aa12.28□□□□□ -0.44
HOXA1-201ENST00000343060 NAP1L5Q96NT1 182 aaPredicted RBP12.28□□□□□ -0.44
HOXA1-201ENST00000343060 USP32Q8NFA0 1604 aa12.27□□□□□ -0.44
HOXA1-201ENST00000343060 MYOM2P54296 1465 aa12.27□□□□□ -0.44
HOXA1-201ENST00000343060 DDX11L8A8MPP1 907 aa12.27□□□□□ -0.45
HOXA1-201ENST00000343060 DDIT3P35638 169 aa12.27□□□□□ -0.45
HOXA1-201ENST00000343060 RWDD1Q9H446 243 aaPredicted RBP12.27□□□□□ -0.45
HOXA1-201ENST00000343060 SBNO2Q9Y2G9 1366 aa12.27□□□□□ -0.45
HOXA1-201ENST00000343060 ABCA6Q8N139 1617 aa12.27□□□□□ -0.45
HOXA1-201ENST00000343060 TET3O43151 1660 aa12.26□□□□□ -0.45
HOXA1-201ENST00000343060 WDR63Q8IWG1 891 aa12.26□□□□□ -0.45
HOXA1-201ENST00000343060 MAP3K4Q9Y6R4 1608 aa12.26□□□□□ -0.45
HOXA1-201ENST00000343060 HSP90AA1P07900 732 aaKnown RBP12.26□□□□□ -0.45
HOXA1-201ENST00000343060 CCDC27Q2M243 656 aa12.26□□□□□ -0.45
HOXA1-201ENST00000343060 CARD14Q9BXL6 1004 aa12.26□□□□□ -0.45
HOXA1-201ENST00000343060 ADGRB2O60241 1585 aa12.25□□□□□ -0.45
HOXA1-201ENST00000343060 C22orf23Q9BZE7 217 aa12.25□□□□□ -0.45
HOXA1-201ENST00000343060 GRPEL1Q9HAV7 217 aa12.25□□□□□ -0.45
HOXA1-201ENST00000343060 ABCC1P33527 1531 aa12.25□□□□□ -0.45
HOXA1-201ENST00000343060 IFT172Q9UG01 1749 aa12.24□□□□□ -0.45
HOXA1-201ENST00000343060 HSP90AA2PQ14568 343 aaPredicted RBP12.24□□□□□ -0.45
HOXA1-201ENST00000343060 RUNDC1Q96C34 613 aa12.24□□□□□ -0.45
HOXA1-201ENST00000343060 ADGRL1O94910 1474 aa12.24□□□□□ -0.45
HOXA1-201ENST00000343060 VWDEQ8N2E2 1590 aa12.24□□□□□ -0.45
HOXA1-201ENST00000343060 ESPNB1AK53 854 aa12.24□□□□□ -0.45
HOXA1-201ENST00000343060 TNNQ9UQP3 1299 aa12.24□□□□□ -0.45
HOXA1-201ENST00000343060 MVPQ14764 893 aaKnown RBP12.23□□□□□ -0.45
HOXA1-201ENST00000343060 ERBB4Q15303 1308 aa12.23□□□□□ -0.45
HOXA1-201ENST00000343060 GZF1Q9H116 711 aaPredicted RBP12.22□□□□□ -0.45
HOXA1-201ENST00000343060 MYH16Q9H6N6 1097 aa12.22□□□□□ -0.45
HOXA1-201ENST00000343060 ZC3H13Q5T200 1668 aaKnown RBP12.22□□□□□ -0.45
HOXA1-201ENST00000343060 INO80Q9ULG1 1556 aaPredicted RBP12.22□□□□□ -0.45
HOXA1-201ENST00000343060 ZNF518AQ6AHZ1 1483 aa12.22□□□□□ -0.45
HOXA1-201ENST00000343060 SNX21Q969T3 373 aa12.22□□□□□ -0.45
HOXA1-201ENST00000343060 CIZ1Q9ULV3 898 aaPredicted RBP12.22□□□□□ -0.45
HOXA1-201ENST00000343060 NRXN1Q9ULB1 1477 aa12.22□□□□□ -0.45
HOXA1-201ENST00000343060 HDAC1Q13547 482 aaPredicted RBP12.21□□□□□ -0.45
HOXA1-201ENST00000343060 CT47B1P0C2W7 299 aaPredicted RBP12.2□□□□□ -0.46
HOXA1-201ENST00000343060 RBM25P49756 843 aaKnown RBP12.2□□□□□ -0.46
HOXA1-201ENST00000343060 HSCBQ8IWL3 235 aa12.2□□□□□ -0.46
HOXA1-201ENST00000343060 SMC5Q8IY18 1101 aa12.2□□□□□ -0.46
HOXA1-201ENST00000343060 ARXQ96QS3 562 aa12.2□□□□□ -0.46
HOXA1-201ENST00000343060 SETBP1Q9Y6X0 1596 aa12.2□□□□□ -0.46
HOXA1-201ENST00000343060 ZFYVE16Q7Z3T8 1539 aa12.2□□□□□ -0.46
HOXA1-201ENST00000343060 TPM2P07951 284 aa12.19□□□□□ -0.46
HOXA1-201ENST00000343060 TCP11L2Q8N4U5 519 aa12.19□□□□□ -0.46
HOXA1-201ENST00000343060 PLCH2O75038 1416 aa12.19□□□□□ -0.46
HOXA1-201ENST00000343060 PTMSP20962 102 aa12.19□□□□□ -0.46
HOXA1-201ENST00000343060 NSD3Q9BZ95 1437 aa12.19□□□□□ -0.46
HOXA1-201ENST00000343060 MFAP1P55081 439 aaKnown RBP12.18□□□□□ -0.46
HOXA1-201ENST00000343060 SPRYD3Q8NCJ5 442 aa12.18□□□□□ -0.46
HOXA1-201ENST00000343060 ZMYND15Q9H091 742 aa12.18□□□□□ -0.46
HOXA1-201ENST00000343060 ARHGAP31Q2M1Z3 1444 aa12.18□□□□□ -0.46
HOXA1-201ENST00000343060 ZKSCAN2Q63HK3 967 aa12.18□□□□□ -0.46
HOXA1-201ENST00000343060 VSIG10Q8N0Z9 540 aa12.17□□□□□ -0.46
HOXA1-201ENST00000343060 RAB3GAP1Q15042 981 aa12.17□□□□□ -0.46
HOXA1-201ENST00000343060 SKOR2Q2VWA4 1001 aaPredicted RBP12.17□□□□□ -0.46
HOXA1-201ENST00000343060 TRAPPC8Q9Y2L5 1435 aa12.17□□□□□ -0.46
HOXA1-201ENST00000343060 CFAP74Q9C0B2 1584 aa12.17□□□□□ -0.46
HOXA1-201ENST00000343060 FBLN2P98095 1184 aa12.16□□□□□ -0.46
HOXA1-201ENST00000343060 DZIP1LQ8IYY4 767 aaKnown RBP12.16□□□□□ -0.46
HOXA1-201ENST00000343060 IBTKQ9P2D0 1353 aaPredicted RBP12.16□□□□□ -0.46
HOXA1-201ENST00000343060 GAS2L3Q86XJ1 694 aa12.16□□□□□ -0.46
HOXA1-201ENST00000343060 BCL2L13Q9BXK5 485 aa12.16□□□□□ -0.46
HOXA1-201ENST00000343060 ARAP3Q8WWN8 1544 aa12.15□□□□□ -0.46
HOXA1-201ENST00000343060 TNPO1Q92973 898 aaKnown RBP12.15□□□□□ -0.46
HOXA1-201ENST00000343060 GBP4Q96PP9 640 aa12.15□□□□□ -0.46
HOXA1-201ENST00000343060 RRP7AQ9Y3A4 280 aaKnown RBP12.15□□□□□ -0.46
HOXA1-201ENST00000343060 KIF1BO60333 1816 aa12.15□□□□□ -0.46
HOXA1-201ENST00000343060 PPP1R9BQ96SB3 815 aa12.15□□□□□ -0.46
HOXA1-201ENST00000343060 MROH2AA6NES4 1674 aa12.15□□□□□ -0.47
HOXA1-201ENST00000343060 CLEC17AQ6ZS10 378 aa12.14□□□□□ -0.47
HOXA1-201ENST00000343060 QRICH2Q9H0J4 1663 aa12.14□□□□□ -0.47
HOXA1-201ENST00000343060 NOS1P29475 1434 aa12.14□□□□□ -0.47
HOXA1-201ENST00000343060 MORC1Q86VD1 984 aa12.14□□□□□ -0.47
HOXA1-201ENST00000343060 TRIM44Q96DX7 344 aaPredicted RBP12.14□□□□□ -0.47
HOXA1-201ENST00000343060 DDX19BQ9UMR2 479 aa12.14□□□□□ -0.47
HOXA1-201ENST00000343060 REREQ9P2R6 1566 aa12.14□□□□□ -0.47
HOXA1-201ENST00000343060 MROH1Q8NDA8 1641 aa12.14□□□□□ -0.47
HOXA1-201ENST00000343060 FTSJ3Q8IY81 847 aaKnown RBP12.13□□□□□ -0.47
HOXA1-201ENST00000343060 CCDC173Q0VFZ6 552 aa12.13□□□□□ -0.47
HOXA1-201ENST00000343060 CFAP70Q5T0N1 1121 aa12.13□□□□□ -0.47
HOXA1-201ENST00000343060 NEUROD2Q15784 382 aa12.12□□□□□ -0.47
HOXA1-201ENST00000343060 NSD2O96028 1365 aa12.12□□□□□ -0.47
HOXA1-201ENST00000343060 TRIM27P14373 513 aa12.12□□□□□ -0.47
HOXA1-201ENST00000343060 TERF1P54274 439 aa12.12□□□□□ -0.47
HOXA1-201ENST00000343060 ABCC11Q96J66 1382 aa12.12□□□□□ -0.47
HOXA1-201ENST00000343060 PDCL3Q9H2J4 239 aa12.11□□□□□ -0.47
HOXA1-201ENST00000343060 ADGRF5Q8IZF2 1346 aa12.11□□□□□ -0.47
HOXA1-201ENST00000343060 ADGRB3O60242 1522 aa12.11□□□□□ -0.47
HOXA1-201ENST00000343060 NUCB1Q02818 461 aa12.11□□□□□ -0.47
HOXA1-201ENST00000343060 EFCAB2Q5VUJ9 269 aa12.11□□□□□ -0.47
HOXA1-201ENST00000343060 CFAP53Q96M91 514 aa12.11□□□□□ -0.47
HOXA1-201ENST00000343060 KIF2CQ99661 725 aa12.11□□□□□ -0.47
HOXA1-201ENST00000343060 EFCAB6Q5THR3 1501 aa12.11□□□□□ -0.47
HOXA1-201ENST00000343060 ADGRB1O14514 1584 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms