RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 CLEC17AQ6ZS10 378 aa23.15■■□□□ 1.3
SMPD1-201ENST00000342245 TESK2Q96S53 571 aa23.15■■□□□ 1.3
SMPD1-201ENST00000342245 ZSCAN20P17040 1043 aaPredicted RBP23.14■■□□□ 1.29
SMPD1-201ENST00000342245 ARHGAP31Q2M1Z3 1444 aa23.14■■□□□ 1.29
SMPD1-201ENST00000342245 EIF2AK4Q9P2K8 1649 aaKnown RBP23.13■■□□□ 1.29
SMPD1-201ENST00000342245 ZNF445P59923 1031 aa23.13■■□□□ 1.29
SMPD1-201ENST00000342245 NUP155O75694 1391 aa23.12■■□□□ 1.29
SMPD1-201ENST00000342245 RBM25P49756 843 aaKnown RBP23.12■■□□□ 1.29
SMPD1-201ENST00000342245 MFAP1P55081 439 aaKnown RBP23.12■■□□□ 1.29
SMPD1-201ENST00000342245 PANK1Q8TE04 598 aa23.12■■□□□ 1.29
SMPD1-201ENST00000342245 PDLIM2Q96JY6 352 aa23.12■■□□□ 1.29
SMPD1-201ENST00000342245 PDIA4P13667 645 aaKnown RBP23.11■■□□□ 1.29
SMPD1-201ENST00000342245 KNSTRNQ9Y448 316 aa23.11■■□□□ 1.29
SMPD1-201ENST00000342245 GTF2E1P29083 439 aaPredicted RBP23.11■■□□□ 1.29
SMPD1-201ENST00000342245 ZKSCAN5Q9Y2L8 839 aa23.1■■□□□ 1.29
SMPD1-201ENST00000342245 LETM1O95202 739 aaPredicted RBP23.1■■□□□ 1.29
SMPD1-201ENST00000342245 CARMIL2Q6F5E8 1435 aa23.1■■□□□ 1.29
SMPD1-201ENST00000342245 HSP90AB1P08238 724 aaKnown RBP23.09■■□□□ 1.29
SMPD1-201ENST00000342245 ABCC10Q5T3U5 1492 aa23.09■■□□□ 1.29
SMPD1-201ENST00000342245 NPC1L1Q9UHC9 1359 aa23.09■■□□□ 1.29
SMPD1-201ENST00000342245 SPINK5Q9NQ38 1064 aaPredicted RBP23.09■■□□□ 1.29
SMPD1-201ENST00000342245 NUP160Q12769 1436 aa23.09■■□□□ 1.29
SMPD1-201ENST00000342245 PRDM10Q9NQV6 1147 aa23.08■■□□□ 1.29
SMPD1-201ENST00000342245 PCDHB15Q9Y5E8 787 aa23.08■■□□□ 1.29
SMPD1-201ENST00000342245 SHROOM2Q13796 1616 aa23.08■■□□□ 1.29
SMPD1-201ENST00000342245 TAF3Q5VWG9 929 aa23.08■■□□□ 1.29
SMPD1-201ENST00000342245 STAC3Q96MF2 364 aa23.08■■□□□ 1.29
SMPD1-201ENST00000342245 PTPRGP23470 1445 aa23.08■■□□□ 1.29
SMPD1-201ENST00000342245 FAM135AQ9P2D6 1515 aa23.08■■□□□ 1.28
SMPD1-201ENST00000342245 PPP4R3BQ5MIZ7 849 aa23.07■■□□□ 1.28
SMPD1-201ENST00000342245 CCDC39Q9UFE4 941 aa23.06■■□□□ 1.28
SMPD1-201ENST00000342245 SHANK2Q9UPX8 1470 aa23.05■■□□□ 1.28
SMPD1-201ENST00000342245 APAF1O14727 1248 aa23.05■■□□□ 1.28
SMPD1-201ENST00000342245 BCL11BQ9C0K0 894 aaPredicted RBP23.05■■□□□ 1.28
SMPD1-201ENST00000342245 DDX49Q9Y6V7 483 aaKnown RBP23.05■■□□□ 1.28
SMPD1-201ENST00000342245 ADCY10Q96PN6 1610 aa23.05■■□□□ 1.28
SMPD1-201ENST00000342245 ASXL1Q8IXJ9 1541 aa23.05■■□□□ 1.28
SMPD1-201ENST00000342245 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.04■■□□□ 1.28
SMPD1-201ENST00000342245 XPCQ01831 940 aaPredicted RBP23.04■■□□□ 1.28
SMPD1-201ENST00000342245 SYNMO15061 1565 aa23.03■■□□□ 1.28
SMPD1-201ENST00000342245 WDR7Q9Y4E6 1490 aa23.03■■□□□ 1.28
SMPD1-201ENST00000342245 PLEKHD1A6NEE1 506 aa23.02■■□□□ 1.28
SMPD1-201ENST00000342245 AMER1Q5JTC6 1135 aaPredicted RBP23.02■■□□□ 1.28
SMPD1-201ENST00000342245 NAP1L2Q9ULW6 460 aaPredicted RBP23.02■■□□□ 1.28
SMPD1-201ENST00000342245 MAGI2Q86UL8 1455 aa23.01■■□□□ 1.27
SMPD1-201ENST00000342245 CDCA8Q53HL2 280 aa23■■□□□ 1.27
SMPD1-201ENST00000342245 RARSP54136 660 aaKnown RBP22.99■■□□□ 1.27
SMPD1-201ENST00000342245 CCDC146Q8IYE0 955 aa22.99■■□□□ 1.27
SMPD1-201ENST00000342245 MYRIPQ8NFW9 859 aa22.99■■□□□ 1.27
SMPD1-201ENST00000342245 IPO4Q8TEX9 1081 aaKnown RBP22.99■■□□□ 1.27
SMPD1-201ENST00000342245 ATP10BO94823 1461 aa22.99■■□□□ 1.27
SMPD1-201ENST00000342245 HMGN5P82970 282 aaKnown RBP22.99■■□□□ 1.27
SMPD1-201ENST00000342245 PRIMPOLQ96LW4 560 aa22.99■■□□□ 1.27
SMPD1-201ENST00000342245 NBPF1Q3BBV0 1214 aa22.98■■□□□ 1.27
SMPD1-201ENST00000342245 ABCA8O94911 1581 aa22.98■■□□□ 1.27
SMPD1-201ENST00000342245 CCDC141Q6ZP82 1450 aa22.98■■□□□ 1.27
SMPD1-201ENST00000342245 K7ELQ4 463 aaPredicted RBP22.96■■□□□ 1.27
SMPD1-201ENST00000342245 BAG4O95429 457 aaKnown RBP22.96■■□□□ 1.27
SMPD1-201ENST00000342245 HDAC1Q13547 482 aaPredicted RBP22.96■■□□□ 1.27
SMPD1-201ENST00000342245 CDC42BPAQ5VT25 1732 aa22.94■■□□□ 1.26
SMPD1-201ENST00000342245 GTF2F1P35269 517 aaKnown RBP eCLIP22.94■■□□□ 1.26
SMPD1-201ENST00000342245 ZSCAN23Q3MJ62 389 aa22.94■■□□□ 1.26
SMPD1-201ENST00000342245 WWC1Q8IX03 1113 aa22.93■■□□□ 1.26
SMPD1-201ENST00000342245 RNF17Q9BXT8 1623 aaKnown RBP22.93■■□□□ 1.26
SMPD1-201ENST00000342245 MVPQ14764 893 aaKnown RBP22.93■■□□□ 1.26
SMPD1-201ENST00000342245 ARID3AQ99856 593 aa22.93■■□□□ 1.26
SMPD1-201ENST00000342245 TAF7LQ5H9L4 462 aa22.92■■□□□ 1.26
SMPD1-201ENST00000342245 A2MP01023 1474 aa22.92■■□□□ 1.26
SMPD1-201ENST00000342245 C9orf84Q5VXU9 1444 aa22.92■■□□□ 1.26
SMPD1-201ENST00000342245 HNRNPMP52272 730 aaKnown RBP eCLIP22.91■■□□□ 1.26
SMPD1-201ENST00000342245 KIAA2012Q0VF49 1180 aa22.91■■□□□ 1.26
SMPD1-201ENST00000342245 TMEM51Q9NW97 253 aa22.91■■□□□ 1.26
SMPD1-201ENST00000342245 NUCB2P80303 420 aa22.91■■□□□ 1.26
SMPD1-201ENST00000342245 RBSNQ9H1K0 784 aa22.91■■□□□ 1.26
SMPD1-201ENST00000342245 RLBP1P12271 317 aa22.9■■□□□ 1.26
SMPD1-201ENST00000342245 SSFA2P28290 1259 aa22.9■■□□□ 1.26
SMPD1-201ENST00000342245 KIF16BQ96L93 1317 aa22.9■■□□□ 1.26
SMPD1-201ENST00000342245 KANK1Q14678 1352 aa22.89■■□□□ 1.25
SMPD1-201ENST00000342245 DMRT2Q9Y5R5 561 aa22.88■■□□□ 1.25
SMPD1-201ENST00000342245 MYO5CQ9NQX4 1742 aa22.88■■□□□ 1.25
SMPD1-201ENST00000342245 WDR63Q8IWG1 891 aa22.87■■□□□ 1.25
SMPD1-201ENST00000342245 TSPY4P0CV99 314 aa22.87■■□□□ 1.25
SMPD1-201ENST00000342245 TSPY10P0CW01 314 aa22.87■■□□□ 1.25
SMPD1-201ENST00000342245 CAVIN1Q6NZI2 390 aaKnown RBP22.87■■□□□ 1.25
SMPD1-201ENST00000342245 NCBP3Q53F19 620 aaKnown RBP22.84■■□□□ 1.25
SMPD1-201ENST00000342245 LRSAM1Q6UWE0 723 aa22.84■■□□□ 1.25
SMPD1-201ENST00000342245 ZKSCAN2Q63HK3 967 aa22.84■■□□□ 1.25
SMPD1-201ENST00000342245 LMBRD1Q9NUN5 540 aa22.84■■□□□ 1.25
SMPD1-201ENST00000342245 CT47B1P0C2W7 299 aaPredicted RBP22.83■■□□□ 1.25
SMPD1-201ENST00000342245 PRIM1P49642 420 aaKnown RBP22.83■■□□□ 1.25
SMPD1-201ENST00000342245 CBX1P83916 185 aa22.83■■□□□ 1.25
SMPD1-201ENST00000342245 ZNF710Q8N1W2 664 aa22.83■■□□□ 1.24
SMPD1-201ENST00000342245 KIF2CQ99661 725 aa22.83■■□□□ 1.24
SMPD1-201ENST00000342245 CHMP4BQ9H444 224 aaKnown RBP22.82■■□□□ 1.24
SMPD1-201ENST00000342245 FTSJ3Q8IY81 847 aaKnown RBP22.82■■□□□ 1.24
SMPD1-201ENST00000342245 DZIP1LQ8IYY4 767 aaKnown RBP22.82■■□□□ 1.24
SMPD1-201ENST00000342245 POLR3AO14802 1390 aaPredicted RBP22.81■■□□□ 1.24
SMPD1-201ENST00000342245 IQGAP1P46940 1657 aa22.81■■□□□ 1.24
SMPD1-201ENST00000342245 DNTTIP2Q5QJE6 756 aaKnown RBP22.81■■□□□ 1.24
SMPD1-201ENST00000342245 MCTP1Q6DN14 999 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms