RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 YTHDC2Q9H6S0 1430 aaKnown RBP29.45■■■□□ 2.31
SYNE2-201ENST00000341472 NUTM2BA6NNL0 878 aaPredicted RBP29.45■■■□□ 2.31
SYNE2-201ENST00000341472 NUTM2EB1AL46 878 aaPredicted RBP29.45■■■□□ 2.31
SYNE2-201ENST00000341472 NUTM2AQ8IVF1 878 aaPredicted RBP29.45■■■□□ 2.31
SYNE2-201ENST00000341472 ESCO1Q5FWF5 840 aa29.44■■■□□ 2.3
SYNE2-201ENST00000341472 NRXN1Q9ULB1 1477 aa29.42■■■□□ 2.3
SYNE2-201ENST00000341472 PLEKHH1Q9ULM0 1364 aa29.42■■■□□ 2.3
SYNE2-201ENST00000341472 MYOM2P54296 1465 aa29.42■■■□□ 2.3
SYNE2-201ENST00000341472 NALCNQ8IZF0 1738 aa29.4■■■□□ 2.3
SYNE2-201ENST00000341472 NUTM2FA1L443 756 aa29.39■■■□□ 2.3
SYNE2-201ENST00000341472 SOS2Q07890 1332 aaPredicted RBP29.38■■■□□ 2.29
SYNE2-201ENST00000341472 IFT172Q9UG01 1749 aa29.37■■■□□ 2.29
SYNE2-201ENST00000341472 POGKQ9P215 609 aa29.37■■■□□ 2.29
SYNE2-201ENST00000341472 PRAM1Q96QH2 718 aa29.36■■■□□ 2.29
SYNE2-201ENST00000341472 ZNF772Q68DY9 489 aaPredicted RBP29.35■■■□□ 2.29
SYNE2-201ENST00000341472 FOXO3O43524 673 aa29.34■■■□□ 2.29
SYNE2-201ENST00000341472 SAFB2Q14151 953 aaKnown RBP eCLIP29.34■■■□□ 2.29
SYNE2-201ENST00000341472 LRP6O75581 1613 aa29.33■■■□□ 2.29
SYNE2-201ENST00000341472 NPHP3Q7Z494 1330 aa29.32■■■□□ 2.28
SYNE2-201ENST00000341472 TRAK1Q9UPV9 953 aa29.32■■■□□ 2.28
SYNE2-201ENST00000341472 PNPLA6Q8IY17 1366 aa29.31■■■□□ 2.28
SYNE2-201ENST00000341472 CDC42BPGQ6DT37 1551 aa29.27■■■□□ 2.28
SYNE2-201ENST00000341472 NHSL1Q5SYE7 1610 aa29.27■■■□□ 2.28
SYNE2-201ENST00000341472 XPCQ01831 940 aaPredicted RBP29.26■■■□□ 2.27
SYNE2-201ENST00000341472 SHPRHQ149N8 1683 aa29.25■■■□□ 2.27
SYNE2-201ENST00000341472 ADAMTS2O95450 1211 aa29.24■■■□□ 2.27
SYNE2-201ENST00000341472 C8orf37Q96NL8 207 aa29.24■■■□□ 2.27
SYNE2-201ENST00000341472 AFF2P51816 1311 aa29.22■■■□□ 2.27
SYNE2-201ENST00000341472 PHF8Q9UPP1 1060 aa29.22■■■□□ 2.27
SYNE2-201ENST00000341472 NGLY1Q96IV0 654 aa29.21■■■□□ 2.27
SYNE2-201ENST00000341472 KRT28Q7Z3Y7 464 aa29.2■■■□□ 2.26
SYNE2-201ENST00000341472 KNDC1Q76NI1 1749 aa29.2■■■□□ 2.26
SYNE2-201ENST00000341472 LAMC1P11047 1609 aa29.2■■■□□ 2.26
SYNE2-201ENST00000341472 RXRBP28702 533 aa29.19■■■□□ 2.26
SYNE2-201ENST00000341472 HIRIP3Q9BW71 556 aaPredicted RBP29.19■■■□□ 2.26
SYNE2-201ENST00000341472 DLC1Q96QB1 1528 aa29.18■■■□□ 2.26
SYNE2-201ENST00000341472 MINK1Q8N4C8 1332 aaPredicted RBP29.18■■■□□ 2.26
SYNE2-201ENST00000341472 ADGRB1O14514 1584 aa29.18■■■□□ 2.26
SYNE2-201ENST00000341472 PSME1Q06323 249 aa29.16■■■□□ 2.26
SYNE2-201ENST00000341472 QTRT2Q9H974 415 aaKnown RBP29.15■■■□□ 2.26
SYNE2-201ENST00000341472 PXDNQ92626 1479 aa29.13■■■□□ 2.25
SYNE2-201ENST00000341472 WASLO00401 505 aaPredicted RBP29.13■■■□□ 2.25
SYNE2-201ENST00000341472 SPATA31A3Q5VYP0 1347 aa29.12■■■□□ 2.25
SYNE2-201ENST00000341472 PMFBP1Q8TBY8 1022 aa29.11■■■□□ 2.25
SYNE2-201ENST00000341472 SIN3AQ96ST3 1273 aa29.11■■■□□ 2.25
SYNE2-201ENST00000341472 NBPF1Q3BBV0 1214 aa29.1■■■□□ 2.25
SYNE2-201ENST00000341472 L3MBTL2Q969R5 705 aa29.1■■■□□ 2.25
SYNE2-201ENST00000341472 NEUROD1Q13562 356 aa29.09■■■□□ 2.25
SYNE2-201ENST00000341472 USP21Q9UK80 565 aa29.08■■■□□ 2.25
SYNE2-201ENST00000341472 ANKARQ7Z5J8 1434 aa29.07■■■□□ 2.24
SYNE2-201ENST00000341472 FNBP4Q8N3X1 1017 aaPredicted RBP29.07■■■□□ 2.24
SYNE2-201ENST00000341472 FMN2Q9NZ56 1722 aa29.06■■■□□ 2.24
SYNE2-201ENST00000341472 EIF3AQ14152 1382 aaKnown RBP29.06■■■□□ 2.24
SYNE2-201ENST00000341472 RBM6P78332 1123 aaKnown RBP29.06■■■□□ 2.24
SYNE2-201ENST00000341472 LMOD2Q6P5Q4 547 aa29.04■■■□□ 2.24
SYNE2-201ENST00000341472 PRR36Q9H6K5 1346 aa29.03■■■□□ 2.24
SYNE2-201ENST00000341472 SBNO1A3KN83 1393 aa29.01■■■□□ 2.24
SYNE2-201ENST00000341472 CDK19Q9BWU1 502 aa29.01■■■□□ 2.23
SYNE2-201ENST00000341472 TRPC5Q9UL62 973 aaPredicted RBP29.01■■■□□ 2.23
SYNE2-201ENST00000341472 NGDNQ8NEJ9 315 aaKnown RBP29■■■□□ 2.23
SYNE2-201ENST00000341472 NUDT16Q96DE0 195 aaKnown RBP29■■■□□ 2.23
SYNE2-201ENST00000341472 HAP1P54257 671 aaPredicted RBP28.99■■■□□ 2.23
SYNE2-201ENST00000341472 TRIM26Q12899 539 aaPredicted RBP28.99■■■□□ 2.23
SYNE2-201ENST00000341472 PLEKHG5O94827 1062 aa28.98■■■□□ 2.23
SYNE2-201ENST00000341472 GPRASP1Q5JY77 1395 aa28.98■■■□□ 2.23
SYNE2-201ENST00000341472 CABLES1Q8TDN4 633 aa28.97■■■□□ 2.23
SYNE2-201ENST00000341472 KIF1AQ12756 1690 aa28.96■■■□□ 2.23
SYNE2-201ENST00000341472 TNS3Q68CZ2 1445 aa28.95■■■□□ 2.23
SYNE2-201ENST00000341472 ADGRB2O60241 1585 aa28.95■■■□□ 2.22
SYNE2-201ENST00000341472 COL22A1Q8NFW1 1626 aaPredicted RBP28.94■■■□□ 2.22
SYNE2-201ENST00000341472 ARHGEF10O15013 1369 aa28.94■■■□□ 2.22
SYNE2-201ENST00000341472 CDK12Q9NYV4 1490 aaPredicted RBP28.93■■■□□ 2.22
SYNE2-201ENST00000341472 CCDC61Q9Y6R9 512 aa28.92■■■□□ 2.22
SYNE2-201ENST00000341472 TULP4Q9NRJ4 1543 aa28.91■■■□□ 2.22
SYNE2-201ENST00000341472 CENPJQ9HC77 1338 aaPredicted RBP28.91■■■□□ 2.22
SYNE2-201ENST00000341472 PAK3O75914 559 aaPredicted RBP28.9■■■□□ 2.22
SYNE2-201ENST00000341472 UNC5CLQ8IV45 518 aa28.89■■■□□ 2.22
SYNE2-201ENST00000341472 UPF1Q92900 1129 aaKnown RBP eCLIP28.89■■■□□ 2.22
SYNE2-201ENST00000341472 BCL9LQ86UU0 1499 aa28.87■■■□□ 2.21
SYNE2-201ENST00000341472 USP32Q8NFA0 1604 aa28.87■■■□□ 2.21
SYNE2-201ENST00000341472 ATRNO75882 1429 aa28.86■■■□□ 2.21
SYNE2-201ENST00000341472 RGPD8O14715 1765 aaPredicted RBP28.86■■■□□ 2.21
SYNE2-201ENST00000341472 PLEKHG3A1L390 1219 aa28.86■■■□□ 2.21
SYNE2-201ENST00000341472 SRPK2P78362 688 aaKnown RBP28.86■■■□□ 2.21
SYNE2-201ENST00000341472 GJD4Q96KN9 370 aaPredicted RBP28.86■■■□□ 2.21
SYNE2-201ENST00000341472 KIAA1210Q9ULL0 1709 aa28.85■■■□□ 2.21
SYNE2-201ENST00000341472 NBPF8Q3BBV2 869 aa28.84■■■□□ 2.21
SYNE2-201ENST00000341472 FAM83GA6ND36 823 aa28.83■■■□□ 2.21
SYNE2-201ENST00000341472 RGS12O14924 1447 aa28.83■■■□□ 2.21
SYNE2-201ENST00000341472 CABP2Q9NPB3 220 aa28.82■■■□□ 2.2
SYNE2-201ENST00000341472 ACEP12821 1306 aa28.82■■■□□ 2.2
SYNE2-201ENST00000341472 ARHGEF28Q8N1W1 1705 aaKnown RBP28.8■■■□□ 2.2
SYNE2-201ENST00000341472 ATP7BP35670 1465 aa28.8■■■□□ 2.2
SYNE2-201ENST00000341472 ROCK2O75116 1388 aaKnown RBP28.8■■■□□ 2.2
SYNE2-201ENST00000341472 SLIT2O94813 1529 aa28.79■■■□□ 2.2
SYNE2-201ENST00000341472 POLR3AO14802 1390 aaPredicted RBP28.75■■■□□ 2.19
SYNE2-201ENST00000341472 VPS72Q15906 364 aa28.75■■■□□ 2.19
SYNE2-201ENST00000341472 EVC2Q86UK5 1308 aa28.74■■■□□ 2.19
SYNE2-201ENST00000341472 CCDC9Q9Y3X0 531 aaKnown RBP28.74■■■□□ 2.19
SYNE2-201ENST00000341472 TONSLQ96HA7 1378 aa28.74■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms