RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 GPR162Q16538 588 aa4.07□□□□□ -1.76
CSMD3-202ENST00000339701 C1orf141Q5JVX7 400 aa4.07□□□□□ -1.76
CSMD3-202ENST00000339701 ZNF772Q68DY9 489 aaPredicted RBP4.07□□□□□ -1.76
CSMD3-202ENST00000339701 FRMPD1Q5SYB0 1578 aa4.07□□□□□ -1.76
CSMD3-202ENST00000339701 ANKRD30AQ9BXX3 1397 aa4.07□□□□□ -1.76
CSMD3-202ENST00000339701 AEBP1Q8IUX7 1158 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 DIP2AQ14689 1571 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 RRP7BPQ9NSQ0 103 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 BRD4O60885 1362 aaPredicted RBP4.06□□□□□ -1.76
CSMD3-202ENST00000339701 FEZ1Q99689 392 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 DHX57Q6P158 1386 aaKnown RBP4.06□□□□□ -1.76
CSMD3-202ENST00000339701 MAPK8IP3Q9UPT6 1336 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 STK26Q9P289 416 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 RSPH6AQ9H0K4 717 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 USP8P40818 1118 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 NEO1Q92859 1461 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 KIAA1107Q9UPP5 1409 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 RFX1P22670 979 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 TSPYL1Q9H0U9 437 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 ABCA6Q8N139 1617 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 BAG6P46379 1132 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 OS9Q13438 667 aaPredicted RBP4.06□□□□□ -1.76
CSMD3-202ENST00000339701 CLEC11AQ9Y240 323 aa4.06□□□□□ -1.76
CSMD3-202ENST00000339701 KANK4Q5T7N3 995 aaPredicted RBP4.05□□□□□ -1.76
CSMD3-202ENST00000339701 ARAP1Q96P48 1450 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 U2SURPO15042 1029 aaKnown RBP4.05□□□□□ -1.76
CSMD3-202ENST00000339701 IPO8O15397 1037 aaKnown RBP4.05□□□□□ -1.76
CSMD3-202ENST00000339701 TTLL12Q14166 644 aaPredicted RBP4.05□□□□□ -1.76
CSMD3-202ENST00000339701 DCTN1Q14203 1278 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 VPS37DQ86XT2 251 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 NAP1L5Q96NT1 182 aaPredicted RBP4.05□□□□□ -1.76
CSMD3-202ENST00000339701 CRBNQ96SW2 442 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 MYO6Q9UM54 1294 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 NEXNQ0ZGT2 675 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 FBXW7Q969H0 707 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 UGGT1Q9NYU2 1555 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 RGL3Q3MIN7 710 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 MSH6P52701 1360 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 ASXL1Q8IXJ9 1541 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 CCER2I3L3R5 266 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 PPP4R2Q9NY27 417 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 SPHKAPQ2M3C7 1700 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 PTMAP06454 111 aaKnown RBP4.05□□□□□ -1.76
CSMD3-202ENST00000339701 HOXA7P31268 230 aaPredicted RBP4.05□□□□□ -1.76
CSMD3-202ENST00000339701 TTC5Q8N0Z6 440 aa4.05□□□□□ -1.76
CSMD3-202ENST00000339701 RBM19Q9Y4C8 960 aaKnown RBP4.05□□□□□ -1.76
CSMD3-202ENST00000339701 PES1O00541 588 aaKnown RBP4.04□□□□□ -1.76
CSMD3-202ENST00000339701 POLR3GO15318 223 aaPredicted RBP4.04□□□□□ -1.76
CSMD3-202ENST00000339701 TCOF1Q13428 1488 aaKnown RBP4.04□□□□□ -1.76
CSMD3-202ENST00000339701 DEF6Q9H4E7 631 aa4.04□□□□□ -1.76
CSMD3-202ENST00000339701 DNTTIP2Q5QJE6 756 aaKnown RBP4.04□□□□□ -1.76
CSMD3-202ENST00000339701 ABCA8O94911 1581 aa4.04□□□□□ -1.76
CSMD3-202ENST00000339701 GORABQ5T7V8 394 aa4.04□□□□□ -1.76
CSMD3-202ENST00000339701 GLI2P10070 1586 aa4.04□□□□□ -1.76
CSMD3-202ENST00000339701 TNNT3P45378 269 aaPredicted RBP4.04□□□□□ -1.76
CSMD3-202ENST00000339701 RNF17Q9BXT8 1623 aaKnown RBP4.04□□□□□ -1.76
CSMD3-202ENST00000339701 SSFA2P28290 1259 aa4.04□□□□□ -1.76
CSMD3-202ENST00000339701 GRM1Q13255 1194 aa4.04□□□□□ -1.76
CSMD3-202ENST00000339701 ADGRL2O95490 1459 aa4.04□□□□□ -1.76
CSMD3-202ENST00000339701 GRIN2AQ12879 1464 aa4.04□□□□□ -1.76
CSMD3-202ENST00000339701 TEX35Q5T0J7 233 aa4.04□□□□□ -1.76
CSMD3-202ENST00000339701 SMC4Q9NTJ3 1288 aa4.04□□□□□ -1.76
CSMD3-202ENST00000339701 KNSTRNQ9Y448 316 aa4.04□□□□□ -1.76
CSMD3-202ENST00000339701 CWC15Q9P013 229 aaKnown RBP4.03□□□□□ -1.76
CSMD3-202ENST00000339701 CLASP1Q7Z460 1538 aa4.03□□□□□ -1.76
CSMD3-202ENST00000339701 TCERG1O14776 1098 aaKnown RBP4.03□□□□□ -1.76
CSMD3-202ENST00000339701 LMOD1P29536 600 aaPredicted RBP4.03□□□□□ -1.76
CSMD3-202ENST00000339701 TUBB4BP68371 445 aa4.03□□□□□ -1.76
CSMD3-202ENST00000339701 ZRSR2Q15696 482 aaKnown RBP4.03□□□□□ -1.76
CSMD3-202ENST00000339701 PODXL2Q9NZ53 605 aa4.03□□□□□ -1.76
CSMD3-202ENST00000339701 CCDC66A2RUB6 948 aa4.03□□□□□ -1.76
CSMD3-202ENST00000339701 VGFO15240 615 aaPredicted RBP4.03□□□□□ -1.76
CSMD3-202ENST00000339701 CCP110O43303 1012 aa4.03□□□□□ -1.76
CSMD3-202ENST00000339701 NF2P35240 595 aa4.03□□□□□ -1.76
CSMD3-202ENST00000339701 HMGN5P82970 282 aaKnown RBP4.03□□□□□ -1.76
CSMD3-202ENST00000339701 TXNDC2Q86VQ3 553 aa4.03□□□□□ -1.76
CSMD3-202ENST00000339701 TPM2P07951 284 aa4.03□□□□□ -1.76
CSMD3-202ENST00000339701 TERF2IPQ9NYB0 399 aa4.03□□□□□ -1.76
CSMD3-202ENST00000339701 HOOK1Q9UJC3 728 aaKnown RBP4.03□□□□□ -1.76
CSMD3-202ENST00000339701 USP32Q8NFA0 1604 aa4.03□□□□□ -1.76
CSMD3-202ENST00000339701 TPM1P09493 284 aa4.03□□□□□ -1.77
CSMD3-202ENST00000339701 STRN4Q9NRL3 753 aa4.03□□□□□ -1.77
CSMD3-202ENST00000339701 FAM208AQ9UK61 1670 aaKnown RBP4.03□□□□□ -1.77
CSMD3-202ENST00000339701 SH3BGRP55822 239 aaPredicted RBP4.02□□□□□ -1.77
CSMD3-202ENST00000339701 HECW2Q9P2P5 1572 aa4.02□□□□□ -1.77
CSMD3-202ENST00000339701 ANKRD26Q9UPS8 1709 aa4.02□□□□□ -1.77
CSMD3-202ENST00000339701 IPO7O95373 1038 aaKnown RBP4.02□□□□□ -1.77
CSMD3-202ENST00000339701 RAPGEF4Q8WZA2 1011 aa4.02□□□□□ -1.77
CSMD3-202ENST00000339701 SETD1AO15047 1707 aaKnown RBP4.02□□□□□ -1.77
CSMD3-202ENST00000339701 PRG4Q92954 1404 aaPredicted RBP4.02□□□□□ -1.77
CSMD3-202ENST00000339701 ADAMTS2O95450 1211 aa4.02□□□□□ -1.77
CSMD3-202ENST00000339701 ERCC4Q92889 916 aaPredicted RBP4.02□□□□□ -1.77
CSMD3-202ENST00000339701 MINK1Q8N4C8 1332 aaPredicted RBP4.02□□□□□ -1.77
CSMD3-202ENST00000339701 DEPDC5O75140 1603 aa4.02□□□□□ -1.77
CSMD3-202ENST00000339701 LRRC9Q6ZRR7 1453 aa4.02□□□□□ -1.77
CSMD3-202ENST00000339701 GOLGA6L7A0A1B0GV03 622 aa4.02□□□□□ -1.77
CSMD3-202ENST00000339701 CADPS2Q86UW7 1296 aa4.02□□□□□ -1.77
CSMD3-202ENST00000339701 PDCL2Q8N4E4 241 aa4.02□□□□□ -1.77
CSMD3-202ENST00000339701 ABCA9Q8IUA7 1624 aa4.02□□□□□ -1.77
CSMD3-202ENST00000339701 CHMP3Q9Y3E7 222 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms