RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 MCM3P25205 808 aa7.38□□□□□ -1.23
CSMD1-201ENST00000335551 FILIP1LQ4L180 1135 aa7.38□□□□□ -1.23
CSMD1-201ENST00000335551 FBXW7Q969H0 707 aa7.38□□□□□ -1.23
CSMD1-201ENST00000335551 MAGEC2Q9UBF1 373 aaPredicted RBP7.38□□□□□ -1.23
CSMD1-201ENST00000335551 CCDC192P0DO97 292 aa7.38□□□□□ -1.23
CSMD1-201ENST00000335551 CNKSR2Q8WXI2 1034 aa7.38□□□□□ -1.23
CSMD1-201ENST00000335551 CCDC91Q7Z6B0 441 aa7.37□□□□□ -1.23
CSMD1-201ENST00000335551 NGEFQ8N5V2 710 aa7.37□□□□□ -1.23
CSMD1-201ENST00000335551 PHF23Q9BUL5 403 aaPredicted RBP7.37□□□□□ -1.23
CSMD1-201ENST00000335551 SDF4Q9BRK5 362 aa7.37□□□□□ -1.23
CSMD1-201ENST00000335551 NOL10Q9BSC4 688 aaKnown RBP7.37□□□□□ -1.23
CSMD1-201ENST00000335551 TERF2IPQ9NYB0 399 aa7.37□□□□□ -1.23
CSMD1-201ENST00000335551 TRAK2O60296 914 aa7.37□□□□□ -1.23
CSMD1-201ENST00000335551 POLR3GO15318 223 aaPredicted RBP7.37□□□□□ -1.23
CSMD1-201ENST00000335551 CLUAP1Q96AJ1 413 aa7.37□□□□□ -1.23
CSMD1-201ENST00000335551 MCM2P49736 904 aa7.37□□□□□ -1.23
CSMD1-201ENST00000335551 TTLL5Q6EMB2 1281 aa7.37□□□□□ -1.23
CSMD1-201ENST00000335551 VPS8Q8N3P4 1428 aa7.36□□□□□ -1.23
CSMD1-201ENST00000335551 NF2P35240 595 aa7.36□□□□□ -1.23
CSMD1-201ENST00000335551 FEZ1Q99689 392 aa7.36□□□□□ -1.23
CSMD1-201ENST00000335551 GBP3Q9H0R5 595 aa7.36□□□□□ -1.23
CSMD1-201ENST00000335551 ZFYVE27Q5T4F4 411 aa7.36□□□□□ -1.23
CSMD1-201ENST00000335551 NFXL1Q6ZNB6 911 aa7.36□□□□□ -1.23
CSMD1-201ENST00000335551 CBFA2T2O43439 604 aa7.36□□□□□ -1.23
CSMD1-201ENST00000335551 FRAT2O75474 233 aaPredicted RBP7.36□□□□□ -1.23
CSMD1-201ENST00000335551 TXLNAP40222 546 aa7.36□□□□□ -1.23
CSMD1-201ENST00000335551 WWC1Q8IX03 1113 aa7.36□□□□□ -1.23
CSMD1-201ENST00000335551 PPFIBP1Q86W92 1011 aa7.36□□□□□ -1.23
CSMD1-201ENST00000335551 UBE2Q2Q8WVN8 375 aa7.36□□□□□ -1.23
CSMD1-201ENST00000335551 CFAP57Q96MR6 1250 aa7.36□□□□□ -1.23
CSMD1-201ENST00000335551 MAPK8IP2Q13387 824 aaPredicted RBP7.36□□□□□ -1.23
CSMD1-201ENST00000335551 KIF3BO15066 747 aa7.36□□□□□ -1.23
CSMD1-201ENST00000335551 CCDC181Q5TID7 509 aa7.36□□□□□ -1.23
CSMD1-201ENST00000335551 ERICH2A1L162 156 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 XBP1P17861 261 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 AEBP1Q8IUX7 1158 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 CEP63Q96MT8 703 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 ZNF396Q96N95 335 aaPredicted RBP7.35□□□□□ -1.23
CSMD1-201ENST00000335551 ZNF330Q9Y3S2 320 aaPredicted RBP7.35□□□□□ -1.23
CSMD1-201ENST00000335551 PDS5BQ9NTI5 1447 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 TRIM34Q9BYJ4 488 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 G3V3G9 751 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 DCAF8Q5TAQ9 597 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 ERC2O15083 957 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 TMCO3Q6UWJ1 677 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 RNF214Q8ND24 703 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 CCDC102AQ96A19 550 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 ESPNB1AK53 854 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 MAP3K9P80192 1104 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 STIM1Q13586 685 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 FMN1Q68DA7 1419 aa7.35□□□□□ -1.23
CSMD1-201ENST00000335551 JMYQ8N9B5 988 aa7.34□□□□□ -1.23
CSMD1-201ENST00000335551 DACH1Q9UI36 760 aa7.34□□□□□ -1.23
CSMD1-201ENST00000335551 IRX3P78415 501 aaPredicted RBP7.34□□□□□ -1.23
CSMD1-201ENST00000335551 PSMA5P28066 241 aa7.34□□□□□ -1.23
CSMD1-201ENST00000335551 GRPEL1Q9HAV7 217 aa7.34□□□□□ -1.23
CSMD1-201ENST00000335551 SYCP1Q15431 976 aa7.34□□□□□ -1.23
CSMD1-201ENST00000335551 TAX1BP1Q86VP1 789 aa7.34□□□□□ -1.23
CSMD1-201ENST00000335551 CDC45O75419 566 aa7.34□□□□□ -1.23
CSMD1-201ENST00000335551 PPM1EQ8WY54 764 aa7.34□□□□□ -1.23
CSMD1-201ENST00000335551 CGNQ9P2M7 1197 aaKnown RBP7.34□□□□□ -1.23
CSMD1-201ENST00000335551 SOX12O15370 315 aa7.34□□□□□ -1.23
CSMD1-201ENST00000335551 SKIDA1Q1XH10 827 aa7.34□□□□□ -1.23
CSMD1-201ENST00000335551 CRACR2AQ9BSW2 395 aa7.34□□□□□ -1.23
CSMD1-201ENST00000335551 DHX16O60231 1041 aaKnown RBP7.34□□□□□ -1.23
CSMD1-201ENST00000335551 RAB3GAP2Q9H2M9 1393 aa7.34□□□□□ -1.23
CSMD1-201ENST00000335551 STAMBPO95630 424 aa7.34□□□□□ -1.24
CSMD1-201ENST00000335551 IFIT2P09913 472 aaKnown RBP7.34□□□□□ -1.24
CSMD1-201ENST00000335551 ANKRD62A6NC57 917 aa7.33□□□□□ -1.24
CSMD1-201ENST00000335551 FAM193AP78312 1265 aa7.33□□□□□ -1.24
CSMD1-201ENST00000335551 CRBNQ96SW2 442 aa7.33□□□□□ -1.24
CSMD1-201ENST00000335551 DNAJC2Q99543 621 aaKnown RBP7.33□□□□□ -1.24
CSMD1-201ENST00000335551 PDCL3Q9H2J4 239 aa7.33□□□□□ -1.24
CSMD1-201ENST00000335551 ANKRD30AQ9BXX3 1397 aa7.33□□□□□ -1.24
CSMD1-201ENST00000335551 GPATCH11Q8N954 259 aa7.33□□□□□ -1.24
CSMD1-201ENST00000335551 BCL11BQ9C0K0 894 aaPredicted RBP7.33□□□□□ -1.24
CSMD1-201ENST00000335551 UBXN4Q92575 508 aa7.33□□□□□ -1.24
CSMD1-201ENST00000335551 RALYLQ86SE5 291 aaKnown RBP7.33□□□□□ -1.24
CSMD1-201ENST00000335551 SETSIPP0DME0 302 aa7.33□□□□□ -1.24
CSMD1-201ENST00000335551 TIGD1Q96MW7 591 aa7.33□□□□□ -1.24
CSMD1-201ENST00000335551 SEPT6Q14141 434 aa7.33□□□□□ -1.24
CSMD1-201ENST00000335551 CTDP1Q9Y5B0 961 aaPredicted RBP7.32□□□□□ -1.24
CSMD1-201ENST00000335551 KIAA1328Q86T90 577 aa7.32□□□□□ -1.24
CSMD1-201ENST00000335551 CUX2O14529 1486 aa7.32□□□□□ -1.24
CSMD1-201ENST00000335551 TICAM2Q86XR7 235 aa7.32□□□□□ -1.24
CSMD1-201ENST00000335551 IL27Q8NEV9 243 aa7.32□□□□□ -1.24
CSMD1-201ENST00000335551 CWC22Q9HCG8 908 aaKnown RBP7.32□□□□□ -1.24
CSMD1-201ENST00000335551 POTEB2H3BUK9 544 aa7.32□□□□□ -1.24
CSMD1-201ENST00000335551 CCDC148Q8NFR7 591 aa7.32□□□□□ -1.24
CSMD1-201ENST00000335551 UACAQ9BZF9 1416 aa7.32□□□□□ -1.24
CSMD1-201ENST00000335551 MAP2K1Q02750 393 aaPredicted RBP7.32□□□□□ -1.24
CSMD1-201ENST00000335551 ZSCAN30Q86W11 494 aa7.32□□□□□ -1.24
CSMD1-201ENST00000335551 WDR66Q8TBY9 1149 aa7.32□□□□□ -1.24
CSMD1-201ENST00000335551 CARMIL1Q5VZK9 1371 aa7.31□□□□□ -1.24
CSMD1-201ENST00000335551 SMC1AQ14683 1233 aaKnown RBP7.31□□□□□ -1.24
CSMD1-201ENST00000335551 HSP90AB4PQ58FF6 505 aa7.31□□□□□ -1.24
CSMD1-201ENST00000335551 SPC24Q8NBT2 197 aa7.31□□□□□ -1.24
CSMD1-201ENST00000335551 SERPINC1P01008 464 aa7.31□□□□□ -1.24
CSMD1-201ENST00000335551 GTF2A1P52655 376 aaPredicted RBP7.31□□□□□ -1.24
CSMD1-201ENST00000335551 EXOC6Q8TAG9 804 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms