RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 FAM135BQ49AJ0 1406 aa23.2■■□□□ 1.3
SHOX-201ENST00000334060 EIF3AQ14152 1382 aaKnown RBP23.2■■□□□ 1.3
SHOX-201ENST00000334060 NUTM2FA1L443 756 aa23.2■■□□□ 1.3
SHOX-201ENST00000334060 PROSER2Q86WR7 435 aaPredicted RBP23.2■■□□□ 1.3
SHOX-201ENST00000334060 TMEM94Q12767 1356 aa23.2■■□□□ 1.3
SHOX-201ENST00000334060 DMRT2Q9Y5R5 561 aa23.19■■□□□ 1.3
SHOX-201ENST00000334060 WASHC2AQ641Q2 1341 aa23.18■■□□□ 1.3
SHOX-201ENST00000334060 POLR3GLQ9BT43 218 aa23.18■■□□□ 1.3
SHOX-201ENST00000334060 LRRC7Q96NW7 1537 aa23.18■■□□□ 1.3
SHOX-201ENST00000334060 LTBP4Q8N2S1 1624 aa23.18■■□□□ 1.3
SHOX-201ENST00000334060 NKTRP30414 1462 aaKnown RBP23.16■■□□□ 1.3
SHOX-201ENST00000334060 CABP2Q9NPB3 220 aa23.16■■□□□ 1.3
SHOX-201ENST00000334060 KIF7Q2M1P5 1343 aa23.16■■□□□ 1.3
SHOX-201ENST00000334060 ZNF316A6NFI3 1004 aaPredicted RBP23.16■■□□□ 1.3
SHOX-201ENST00000334060 SIRT1Q96EB6 747 aa23.14■■□□□ 1.29
SHOX-201ENST00000334060 PRR36Q9H6K5 1346 aa23.12■■□□□ 1.29
SHOX-201ENST00000334060 C14orf37Q86TY3 774 aa23.11■■□□□ 1.29
SHOX-201ENST00000334060 CDK19Q9BWU1 502 aa23.11■■□□□ 1.29
SHOX-201ENST00000334060 SBNO2Q9Y2G9 1366 aa23.11■■□□□ 1.29
SHOX-201ENST00000334060 ADGRL3Q9HAR2 1447 aa23.1■■□□□ 1.29
SHOX-201ENST00000334060 CCDC7Q96M83 1385 aa23.09■■□□□ 1.29
SHOX-201ENST00000334060 WASLO00401 505 aaPredicted RBP23.09■■□□□ 1.29
SHOX-201ENST00000334060 ADGRB2O60241 1585 aa23.08■■□□□ 1.29
SHOX-201ENST00000334060 USP32Q8NFA0 1604 aa23.08■■□□□ 1.28
SHOX-201ENST00000334060 SRPK2P78362 688 aaKnown RBP23.07■■□□□ 1.28
SHOX-201ENST00000334060 TMF1P82094 1093 aa23.07■■□□□ 1.28
SHOX-201ENST00000334060 RGPD8O14715 1765 aaPredicted RBP23.05■■□□□ 1.28
SHOX-201ENST00000334060 MYOM1P52179 1685 aa23.05■■□□□ 1.28
SHOX-201ENST00000334060 EVC2Q86UK5 1308 aa23.04■■□□□ 1.28
SHOX-201ENST00000334060 ATP7BP35670 1465 aa23.04■■□□□ 1.28
SHOX-201ENST00000334060 SLC12A5Q9H2X9 1139 aa23.02■■□□□ 1.28
SHOX-201ENST00000334060 CDC42BPGQ6DT37 1551 aa23.02■■□□□ 1.28
SHOX-201ENST00000334060 FMN2Q9NZ56 1722 aa23.02■■□□□ 1.28
SHOX-201ENST00000334060 DDX10Q13206 875 aaKnown RBP23.01■■□□□ 1.27
SHOX-201ENST00000334060 NUDT16Q96DE0 195 aaKnown RBP23■■□□□ 1.27
SHOX-201ENST00000334060 C19orf44Q9H6X5 657 aa23■■□□□ 1.27
SHOX-201ENST00000334060 ORAI2Q96SN7 254 aa22.99■■□□□ 1.27
SHOX-201ENST00000334060 TMC1Q8TDI8 760 aa22.98■■□□□ 1.27
SHOX-201ENST00000334060 CABP1Q9NZU7 370 aa22.98■■□□□ 1.27
SHOX-201ENST00000334060 PMFBP1Q8TBY8 1022 aa22.97■■□□□ 1.27
SHOX-201ENST00000334060 MST1RQ04912 1400 aa22.97■■□□□ 1.27
SHOX-201ENST00000334060 MSH6P52701 1360 aa22.96■■□□□ 1.27
SHOX-201ENST00000334060 DDX17Q92841 729 aaKnown RBP22.96■■□□□ 1.27
SHOX-201ENST00000334060 CD163L1Q9NR16 1453 aa22.95■■□□□ 1.26
SHOX-201ENST00000334060 TOPAZ1Q8N9V7 1692 aa22.95■■□□□ 1.26
SHOX-201ENST00000334060 PPIP5K1Q6PFW1 1433 aa22.94■■□□□ 1.26
SHOX-201ENST00000334060 C1orf167Q5SNV9 1468 aa22.93■■□□□ 1.26
SHOX-201ENST00000334060 NCOA3Q9Y6Q9 1424 aa22.92■■□□□ 1.26
SHOX-201ENST00000334060 ATF3P18847 181 aa22.92■■□□□ 1.26
SHOX-201ENST00000334060 CNGB1Q14028 1251 aaPredicted RBP22.92■■□□□ 1.26
SHOX-201ENST00000334060 ESCO1Q5FWF5 840 aa22.9■■□□□ 1.26
SHOX-201ENST00000334060 CARD14Q9BXL6 1004 aa22.9■■□□□ 1.26
SHOX-201ENST00000334060 PANK3Q9H999 370 aa22.9■■□□□ 1.26
SHOX-201ENST00000334060 XPCQ01831 940 aaPredicted RBP22.9■■□□□ 1.26
SHOX-201ENST00000334060 CCDC61Q9Y6R9 512 aa22.89■■□□□ 1.26
SHOX-201ENST00000334060 A0A1W2PP64 1363 aa22.89■■□□□ 1.26
SHOX-201ENST00000334060 ATAD2Q6PL18 1390 aa22.89■■□□□ 1.25
SHOX-201ENST00000334060 DCCP43146 1447 aa22.88■■□□□ 1.25
SHOX-201ENST00000334060 MYT1Q01538 1121 aa22.87■■□□□ 1.25
SHOX-201ENST00000334060 CADPS2Q86UW7 1296 aa22.87■■□□□ 1.25
SHOX-201ENST00000334060 CERKQ8TCT0 537 aa22.87■■□□□ 1.25
SHOX-201ENST00000334060 ANKARQ7Z5J8 1434 aa22.86■■□□□ 1.25
SHOX-201ENST00000334060 ACEP12821 1306 aa22.86■■□□□ 1.25
SHOX-201ENST00000334060 CDCA8Q53HL2 280 aa22.86■■□□□ 1.25
SHOX-201ENST00000334060 SLAIN2Q9P270 581 aa22.86■■□□□ 1.25
SHOX-201ENST00000334060 FOXO3O43524 673 aa22.84■■□□□ 1.25
SHOX-201ENST00000334060 BRINP3Q76B58 766 aa22.84■■□□□ 1.25
SHOX-201ENST00000334060 PHF8Q9UPP1 1060 aa22.83■■□□□ 1.25
SHOX-201ENST00000334060 PUS7Q96PZ0 661 aaKnown RBP22.83■■□□□ 1.24
SHOX-201ENST00000334060 CPSF1Q10570 1443 aaKnown RBP22.82■■□□□ 1.24
SHOX-201ENST00000334060 PLEKHG3A1L390 1219 aa22.81■■□□□ 1.24
SHOX-201ENST00000334060 PER1O15534 1290 aaPredicted RBP22.81■■□□□ 1.24
SHOX-201ENST00000334060 PIP4K2BP78356 416 aa22.81■■□□□ 1.24
SHOX-201ENST00000334060 ITSN1Q15811 1721 aa22.81■■□□□ 1.24
SHOX-201ENST00000334060 ZRANB1Q9UGI0 708 aa22.8■■□□□ 1.24
SHOX-201ENST00000334060 ANKRD36BQ8N2N9 1353 aa22.8■■□□□ 1.24
SHOX-201ENST00000334060 NSD3Q9BZ95 1437 aa22.8■■□□□ 1.24
SHOX-201ENST00000334060 SLC24A1O60721 1099 aa22.8■■□□□ 1.24
SHOX-201ENST00000334060 NGDNQ8NEJ9 315 aaKnown RBP22.79■■□□□ 1.24
SHOX-201ENST00000334060 AKAP12Q02952 1782 aa22.79■■□□□ 1.24
SHOX-201ENST00000334060 UBAP1LF5GYI3 381 aa22.78■■□□□ 1.24
SHOX-201ENST00000334060 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.78■■□□□ 1.24
SHOX-201ENST00000334060 POLR3AO14802 1390 aaPredicted RBP22.78■■□□□ 1.24
SHOX-201ENST00000334060 ROBO1Q9Y6N7 1651 aa22.78■■□□□ 1.24
SHOX-201ENST00000334060 KTN1Q86UP2 1357 aaKnown RBP22.77■■□□□ 1.23
SHOX-201ENST00000334060 SCAF1Q9H7N4 1312 aaKnown RBP22.76■■□□□ 1.23
SHOX-201ENST00000334060 MON2Q7Z3U7 1717 aa22.76■■□□□ 1.23
SHOX-201ENST00000334060 NRKQ7Z2Y5 1582 aa22.75■■□□□ 1.23
SHOX-201ENST00000334060 USP6P35125 1406 aa22.75■■□□□ 1.23
SHOX-201ENST00000334060 PLEKHG5O94827 1062 aa22.74■■□□□ 1.23
SHOX-201ENST00000334060 NUTM2GQ5VZR2 741 aa22.74■■□□□ 1.23
SHOX-201ENST00000334060 NME9Q86XW9 330 aa22.74■■□□□ 1.23
SHOX-201ENST00000334060 CC2D1BQ5T0F9 858 aaKnown RBP22.73■■□□□ 1.23
SHOX-201ENST00000334060 DIEXFQ68CQ4 756 aaKnown RBP22.73■■□□□ 1.23
SHOX-201ENST00000334060 SSH2Q76I76 1423 aa22.73■■□□□ 1.23
SHOX-201ENST00000334060 NINLQ9Y2I6 1382 aa22.72■■□□□ 1.23
SHOX-201ENST00000334060 FBLN1P23142 703 aa22.72■■□□□ 1.23
SHOX-201ENST00000334060 AMER1Q5JTC6 1135 aaPredicted RBP22.72■■□□□ 1.23
SHOX-201ENST00000334060 HDGFL2Q7Z4V5 671 aaPredicted RBP22.72■■□□□ 1.23
SHOX-201ENST00000334060 TERF2IPQ9NYB0 399 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 113.3 ms