RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 QPCTQ16769 361 aa6.87□□□□□ -1.31
HMGB1-201ENST00000326004 BANK1Q8NDB2 785 aa6.87□□□□□ -1.31
HMGB1-201ENST00000326004 HLA-CQ95604 372 aa6.87□□□□□ -1.31
HMGB1-201ENST00000326004 MYT1LQ9UL68 1186 aa6.87□□□□□ -1.31
HMGB1-201ENST00000326004 PCDHB3Q9Y5E6 796 aa6.87□□□□□ -1.31
HMGB1-201ENST00000326004 PUS10Q3MIT2 529 aaKnown RBP6.86□□□□□ -1.31
HMGB1-201ENST00000326004 CABLES1Q8TDN4 633 aa6.86□□□□□ -1.31
HMGB1-201ENST00000326004 SALL2Q9Y467 1007 aaPredicted RBP6.86□□□□□ -1.31
HMGB1-201ENST00000326004 C6orf229H3BNL8 230 aa6.85□□□□□ -1.31
HMGB1-201ENST00000326004 NR1I2O75469 434 aa6.85□□□□□ -1.31
HMGB1-201ENST00000326004 RTL5Q5HYW3 569 aaPredicted RBP6.85□□□□□ -1.31
HMGB1-201ENST00000326004 SLC27A5Q9Y2P5 690 aa6.85□□□□□ -1.31
HMGB1-201ENST00000326004 FBXO31Q5XUX0 539 aaPredicted RBP6.84□□□□□ -1.31
HMGB1-201ENST00000326004 SOCS7O14512 581 aa6.83□□□□□ -1.32
HMGB1-201ENST00000326004 MCM6Q14566 821 aa6.83□□□□□ -1.32
HMGB1-201ENST00000326004 BLOC1S3Q6QNY0 202 aa6.83□□□□□ -1.32
HMGB1-201ENST00000326004 RETREG3Q86VR2 466 aa6.83□□□□□ -1.32
HMGB1-201ENST00000326004 SCUBE3Q8IX30 993 aa6.83□□□□□ -1.32
HMGB1-201ENST00000326004 HELBQ8NG08 1087 aaPredicted RBP6.83□□□□□ -1.32
HMGB1-201ENST00000326004 PTPN5P54829 565 aa6.82□□□□□ -1.32
HMGB1-201ENST00000326004 APBB1O00213 710 aa6.81□□□□□ -1.32
HMGB1-201ENST00000326004 AP1G2O75843 785 aa6.81□□□□□ -1.32
HMGB1-201ENST00000326004 FMNL1O95466 1100 aaPredicted RBP6.81□□□□□ -1.32
HMGB1-201ENST00000326004 DESI1Q6ICB0 168 aa6.81□□□□□ -1.32
HMGB1-201ENST00000326004 BRICD5Q6PL45 260 aa6.81□□□□□ -1.32
HMGB1-201ENST00000326004 USP17L8P0C7I0 530 aa6.8□□□□□ -1.32
HMGB1-201ENST00000326004 UBTFP17480 764 aaKnown RBP6.8□□□□□ -1.32
HMGB1-201ENST00000326004 RNF19BQ6ZMZ0 732 aa6.8□□□□□ -1.32
HMGB1-201ENST00000326004 PRR7Q8TB68 274 aa6.8□□□□□ -1.32
HMGB1-201ENST00000326004 SYMPKQ92797 1274 aaKnown RBP6.8□□□□□ -1.32
HMGB1-201ENST00000326004 RNF166Q96A37 237 aaPredicted RBP6.8□□□□□ -1.32
HMGB1-201ENST00000326004 THAP11Q96EK4 314 aa6.8□□□□□ -1.32
HMGB1-201ENST00000326004 USB1Q9BQ65 265 aaKnown RBP6.8□□□□□ -1.32
HMGB1-201ENST00000326004 CFAP99D6REC4 459 aa6.79□□□□□ -1.32
HMGB1-201ENST00000326004 SPNS2Q8IVW8 549 aa6.79□□□□□ -1.32
HMGB1-201ENST00000326004 ZMYND15Q9H091 742 aa6.79□□□□□ -1.32
HMGB1-201ENST00000326004 IL21Q9HBE4 155 aa6.79□□□□□ -1.32
HMGB1-201ENST00000326004 HCSTQ9UBK5 93 aa6.79□□□□□ -1.32
HMGB1-201ENST00000326004 ZPR1O75312 459 aa6.78□□□□□ -1.32
HMGB1-201ENST00000326004 COPS2P61201 443 aa6.78□□□□□ -1.32
HMGB1-201ENST00000326004 MSS51Q4VC12 460 aa6.78□□□□□ -1.32
HMGB1-201ENST00000326004 TSC1Q92574 1164 aa6.78□□□□□ -1.32
HMGB1-201ENST00000326004 MTRQ99707 1265 aa6.78□□□□□ -1.32
HMGB1-201ENST00000326004 PRM3Q9NNZ6 103 aa6.78□□□□□ -1.32
HMGB1-201ENST00000326004 SNRKQ9NRH2 765 aa6.78□□□□□ -1.32
HMGB1-201ENST00000326004 RAD21O60216 631 aa6.77□□□□□ -1.33
HMGB1-201ENST00000326004 CTDSPL2Q05D32 466 aa6.77□□□□□ -1.33
HMGB1-201ENST00000326004 MTMR14Q8NCE2 650 aa6.77□□□□□ -1.33
HMGB1-201ENST00000326004 SPSB2Q99619 263 aa6.77□□□□□ -1.33
HMGB1-201ENST00000326004 A6NJR5 290 aa6.76□□□□□ -1.33
HMGB1-201ENST00000326004 ADH1BP00325 375 aa6.76□□□□□ -1.33
HMGB1-201ENST00000326004 TJAP1Q5JTD0 557 aa6.76□□□□□ -1.33
HMGB1-201ENST00000326004 JUNDP17535 347 aa6.75□□□□□ -1.33
HMGB1-201ENST00000326004 LYPD8Q6UX82 237 aa6.75□□□□□ -1.33
HMGB1-201ENST00000326004 TLL1O43897 1013 aa6.73□□□□□ -1.33
HMGB1-201ENST00000326004 DXOO77932 396 aaKnown RBP6.73□□□□□ -1.33
HMGB1-201ENST00000326004 MMP16P51512 607 aa6.73□□□□□ -1.33
HMGB1-201ENST00000326004 PTPRNQ16849 979 aa6.73□□□□□ -1.33
HMGB1-201ENST00000326004 FAM160A2Q8N612 972 aaPredicted RBP6.73□□□□□ -1.33
HMGB1-201ENST00000326004 LRRN4Q8WUT4 740 aa6.73□□□□□ -1.33
HMGB1-201ENST00000326004 CLUAP1Q96AJ1 413 aa6.73□□□□□ -1.33
HMGB1-201ENST00000326004 GJD4Q96KN9 370 aaPredicted RBP6.73□□□□□ -1.33
HMGB1-201ENST00000326004 COG6Q9Y2V7 657 aa6.73□□□□□ -1.33
HMGB1-201ENST00000326004 PER1O15534 1290 aaPredicted RBP6.72□□□□□ -1.33
HMGB1-201ENST00000326004 ITGBL1O95965 494 aaPredicted RBP6.72□□□□□ -1.33
HMGB1-201ENST00000326004 PNMA1Q8ND90 353 aa6.72□□□□□ -1.33
HMGB1-201ENST00000326004 ZNF516Q92618 1163 aa6.72□□□□□ -1.33
HMGB1-201ENST00000326004 SLC6A16Q9GZN6 736 aa6.72□□□□□ -1.33
HMGB1-201ENST00000326004 HMX1Q9NP08 348 aaPredicted RBP6.72□□□□□ -1.33
HMGB1-201ENST00000326004 NDUFB9Q9Y6M9 179 aa6.72□□□□□ -1.33
HMGB1-201ENST00000326004 KCNC4Q03721 635 aa6.71□□□□□ -1.34
HMGB1-201ENST00000326004 PROSER2Q86WR7 435 aaPredicted RBP6.71□□□□□ -1.34
HMGB1-201ENST00000326004 WWC1Q8IX03 1113 aa6.71□□□□□ -1.34
HMGB1-201ENST00000326004 F12P00748 615 aaPredicted RBP6.7□□□□□ -1.34
HMGB1-201ENST00000326004 MMRN1Q13201 1228 aa6.7□□□□□ -1.34
HMGB1-201ENST00000326004 POM121Q96HA1 1249 aa6.7□□□□□ -1.34
HMGB1-201ENST00000326004 TRIM34Q9BYJ4 488 aa6.7□□□□□ -1.34
HMGB1-201ENST00000326004 TRAK2O60296 914 aa6.69□□□□□ -1.34
HMGB1-201ENST00000326004 CCNYL3P0C7X3 344 aa6.69□□□□□ -1.34
HMGB1-201ENST00000326004 NUDT12Q9BQG2 462 aa6.69□□□□□ -1.34
HMGB1-201ENST00000326004 GDPD2Q9HCC8 539 aa6.69□□□□□ -1.34
HMGB1-201ENST00000326004 PRDM9Q9NQV7 894 aa6.69□□□□□ -1.34
HMGB1-201ENST00000326004 TBC1D2BQ9UPU7 963 aa6.69□□□□□ -1.34
HMGB1-201ENST00000326004 NR6A1Q15406 480 aa6.68□□□□□ -1.34
HMGB1-201ENST00000326004 FNBP4Q8N3X1 1017 aaPredicted RBP6.68□□□□□ -1.34
HMGB1-201ENST00000326004 EVA1BQ9NVM1 165 aa6.68□□□□□ -1.34
HMGB1-201ENST00000326004 CTHP32929 405 aa6.67□□□□□ -1.34
HMGB1-201ENST00000326004 ABL2P42684 1182 aa6.67□□□□□ -1.34
HMGB1-201ENST00000326004 KCNH2Q12809 1159 aa6.67□□□□□ -1.34
HMGB1-201ENST00000326004 EPS8L1Q8TE68 723 aa6.67□□□□□ -1.34
HMGB1-201ENST00000326004 ZC3H4Q9UPT8 1303 aaKnown RBP6.67□□□□□ -1.34
HMGB1-201ENST00000326004 GGCXP38435 758 aa6.66□□□□□ -1.34
HMGB1-201ENST00000326004 WASHC4Q2M389 1173 aa6.66□□□□□ -1.34
HMGB1-201ENST00000326004 ARMC2Q8NEN0 867 aa6.66□□□□□ -1.34
HMGB1-201ENST00000326004 NKX2-3Q8TAU0 364 aa6.66□□□□□ -1.34
HMGB1-201ENST00000326004 MAP10Q9P2G4 905 aa6.66□□□□□ -1.34
HMGB1-201ENST00000326004 S1PR4O95977 384 aa6.65□□□□□ -1.34
HMGB1-201ENST00000326004 GPKOWQ92917 476 aaPredicted RBP eCLIP6.65□□□□□ -1.34
HMGB1-201ENST00000326004 FKBPLQ9UIM3 349 aa6.65□□□□□ -1.34
HMGB1-201ENST00000326004 ZNF330Q9Y3S2 320 aaPredicted RBP6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms