RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 ANO8Q9HCE9 1232 aaPredicted RBP18.2■□□□□ 0.5
TCOF1-201ENST00000323668 NSD3Q9BZ95 1437 aa18.19■□□□□ 0.5
TCOF1-201ENST00000323668 CHMP4AQ9BY43 222 aa18.19■□□□□ 0.5
TCOF1-201ENST00000323668 NUTM2FA1L443 756 aa18.19■□□□□ 0.5
TCOF1-201ENST00000323668 FOXD4L5Q5VV16 416 aaPredicted RBP18.19■□□□□ 0.5
TCOF1-201ENST00000323668 FOXD4L4Q8WXT5 416 aaPredicted RBP18.19■□□□□ 0.5
TCOF1-201ENST00000323668 PRKAR2BP31323 418 aa18.18■□□□□ 0.5
TCOF1-201ENST00000323668 ATP10BO94823 1461 aa18.18■□□□□ 0.5
TCOF1-201ENST00000323668 SCAF11Q99590 1463 aaKnown RBP18.18■□□□□ 0.5
TCOF1-201ENST00000323668 SAMD9Q5K651 1589 aa18.18■□□□□ 0.5
TCOF1-201ENST00000323668 FAM43AQ8N2R8 423 aa18.18■□□□□ 0.5
TCOF1-201ENST00000323668 UHRF1BP1Q6BDS2 1440 aa18.18■□□□□ 0.5
TCOF1-201ENST00000323668 CHAF1AQ13111 956 aaPredicted RBP18.18■□□□□ 0.5
TCOF1-201ENST00000323668 HSP90AA2PQ14568 343 aaPredicted RBP18.18■□□□□ 0.5
TCOF1-201ENST00000323668 AMPHP49418 695 aa18.17■□□□□ 0.5
TCOF1-201ENST00000323668 ARHGEF12Q9NZN5 1544 aa18.17■□□□□ 0.5
TCOF1-201ENST00000323668 NUCB2P80303 420 aa18.17■□□□□ 0.5
TCOF1-201ENST00000323668 CDC45O75419 566 aa18.17■□□□□ 0.5
TCOF1-201ENST00000323668 DNMT1P26358 1616 aaKnown RBP18.16■□□□□ 0.5
TCOF1-201ENST00000323668 INTS3Q68E01 1043 aaKnown RBP18.16■□□□□ 0.5
TCOF1-201ENST00000323668 MCM4P33991 863 aa18.15■□□□□ 0.5
TCOF1-201ENST00000323668 RILPL2Q969X0 211 aa18.15■□□□□ 0.5
TCOF1-201ENST00000323668 GCC1Q96CN9 775 aa18.15■□□□□ 0.5
TCOF1-201ENST00000323668 ITSN2Q9NZM3 1697 aa18.15■□□□□ 0.5
TCOF1-201ENST00000323668 IGHDP01880 384 aa18.15■□□□□ 0.5
TCOF1-201ENST00000323668 NGDNQ8NEJ9 315 aaKnown RBP18.15■□□□□ 0.5
TCOF1-201ENST00000323668 MAGI3Q5TCQ9 1506 aa18.15■□□□□ 0.5
TCOF1-201ENST00000323668 ADGRF5Q8IZF2 1346 aa18.15■□□□□ 0.5
TCOF1-201ENST00000323668 RPGRIP1LQ68CZ1 1315 aa18.14■□□□□ 0.49
TCOF1-201ENST00000323668 TMPOP42166 694 aaKnown RBP18.13■□□□□ 0.49
TCOF1-201ENST00000323668 PRAM1Q96QH2 718 aa18.13■□□□□ 0.49
TCOF1-201ENST00000323668 PHF14O94880 888 aa18.13■□□□□ 0.49
TCOF1-201ENST00000323668 KIAA0556O60303 1618 aa18.12■□□□□ 0.49
TCOF1-201ENST00000323668 NUP160Q12769 1436 aa18.12■□□□□ 0.49
TCOF1-201ENST00000323668 ADAMTS12P58397 1594 aa18.11■□□□□ 0.49
TCOF1-201ENST00000323668 FAM135AQ9P2D6 1515 aa18.11■□□□□ 0.49
TCOF1-201ENST00000323668 C1orf115Q9H7X2 142 aa18.11■□□□□ 0.49
TCOF1-201ENST00000323668 TWISTNBQ3B726 338 aaPredicted RBP18.1■□□□□ 0.49
TCOF1-201ENST00000323668 C8orf34Q49A92 452 aa18.1■□□□□ 0.49
TCOF1-201ENST00000323668 CHD1LQ86WJ1 897 aa18.1■□□□□ 0.49
TCOF1-201ENST00000323668 HDAC5Q9UQL6 1122 aa18.1■□□□□ 0.49
TCOF1-201ENST00000323668 DRC7Q8IY82 874 aa18.1■□□□□ 0.49
TCOF1-201ENST00000323668 MCTP1Q6DN14 999 aa18.1■□□□□ 0.49
TCOF1-201ENST00000323668 NAP1L2Q9ULW6 460 aaPredicted RBP18.1■□□□□ 0.49
TCOF1-201ENST00000323668 SSH1Q8WYL5 1049 aa18.1■□□□□ 0.49
TCOF1-201ENST00000323668 PLEKHH1Q9ULM0 1364 aa18.1■□□□□ 0.49
TCOF1-201ENST00000323668 TMEM57Q8N5G2 664 aa18.09■□□□□ 0.49
TCOF1-201ENST00000323668 ADGRL2O95490 1459 aa18.09■□□□□ 0.49
TCOF1-201ENST00000323668 ZNF428Q96B54 188 aa18.09■□□□□ 0.49
TCOF1-201ENST00000323668 GCC2Q8IWJ2 1684 aa18.09■□□□□ 0.49
TCOF1-201ENST00000323668 TBC1D2Q9BYX2 928 aa18.09■□□□□ 0.49
TCOF1-201ENST00000323668 CABP1Q9NZU7 370 aa18.09■□□□□ 0.49
TCOF1-201ENST00000323668 ISY1Q9ULR0 285 aaKnown RBP18.09■□□□□ 0.49
TCOF1-201ENST00000323668 SHANK2Q9UPX8 1470 aa18.08■□□□□ 0.49
TCOF1-201ENST00000323668 GPATCH3Q96I76 525 aa18.08■□□□□ 0.48
TCOF1-201ENST00000323668 SLC52A1Q9NWF4 448 aa18.08■□□□□ 0.48
TCOF1-201ENST00000323668 CSPP1Q1MSJ5 1256 aa18.08■□□□□ 0.48
TCOF1-201ENST00000323668 GPRASP1Q5JY77 1395 aa18.08■□□□□ 0.48
TCOF1-201ENST00000323668 FOXD4L6Q3SYB3 417 aaPredicted RBP18.07■□□□□ 0.48
TCOF1-201ENST00000323668 FOXD4L3Q6VB84 417 aaPredicted RBP18.07■□□□□ 0.48
TCOF1-201ENST00000323668 LTV1Q96GA3 475 aaPredicted RBP18.07■□□□□ 0.48
TCOF1-201ENST00000323668 FCHSD2O94868 740 aa18.07■□□□□ 0.48
TCOF1-201ENST00000323668 ABCA5Q8WWZ7 1642 aa18.07■□□□□ 0.48
TCOF1-201ENST00000323668 GOLGA6L6A8MZA4 724 aa18.07■□□□□ 0.48
TCOF1-201ENST00000323668 NASPP49321 788 aaPredicted RBP18.07■□□□□ 0.48
TCOF1-201ENST00000323668 DISP1Q96F81 1524 aa18.07■□□□□ 0.48
TCOF1-201ENST00000323668 RABEP1Q15276 862 aa18.06■□□□□ 0.48
TCOF1-201ENST00000323668 ANO2Q9NQ90 1003 aa18.06■□□□□ 0.48
TCOF1-201ENST00000323668 CIZ1Q9ULV3 898 aaPredicted RBP18.06■□□□□ 0.48
TCOF1-201ENST00000323668 OSCARQ8IYS5 282 aa18.06■□□□□ 0.48
TCOF1-201ENST00000323668 EID1Q9Y6B2 187 aa18.06■□□□□ 0.48
TCOF1-201ENST00000323668 CDK19Q9BWU1 502 aa18.06■□□□□ 0.48
TCOF1-201ENST00000323668 ASXL1Q8IXJ9 1541 aa18.05■□□□□ 0.48
TCOF1-201ENST00000323668 KIF21AQ7Z4S6 1674 aa18.05■□□□□ 0.48
TCOF1-201ENST00000323668 ATAD2Q6PL18 1390 aa18.05■□□□□ 0.48
TCOF1-201ENST00000323668 NRDCO43847 1150 aa18.05■□□□□ 0.48
TCOF1-201ENST00000323668 FKBP5Q13451 457 aaPredicted RBP18.05■□□□□ 0.48
TCOF1-201ENST00000323668 K7ELQ4 463 aaPredicted RBP18.04■□□□□ 0.48
TCOF1-201ENST00000323668 TBC1D32Q96NH3 1257 aa18.04■□□□□ 0.48
TCOF1-201ENST00000323668 ATP6V1DQ9Y5K8 247 aa18.04■□□□□ 0.48
TCOF1-201ENST00000323668 COL17A1Q9UMD9 1497 aaPredicted RBP18.03■□□□□ 0.48
TCOF1-201ENST00000323668 GRPEL1Q9HAV7 217 aa18.03■□□□□ 0.48
TCOF1-201ENST00000323668 TSPYL4Q9UJ04 414 aa18.03■□□□□ 0.48
TCOF1-201ENST00000323668 PCDHB15Q9Y5E8 787 aa18.03■□□□□ 0.48
TCOF1-201ENST00000323668 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.03■□□□□ 0.48
TCOF1-201ENST00000323668 ARID3AQ99856 593 aa18.03■□□□□ 0.48
TCOF1-201ENST00000323668 TRIM27P14373 513 aa18.02■□□□□ 0.48
TCOF1-201ENST00000323668 KDM6BO15054 1643 aa18.02■□□□□ 0.48
TCOF1-201ENST00000323668 HTATSF1O43719 755 aaKnown RBP18.02■□□□□ 0.48
TCOF1-201ENST00000323668 ABCC11Q96J66 1382 aa18.01■□□□□ 0.47
TCOF1-201ENST00000323668 PIK3C2GO75747 1445 aa18.01■□□□□ 0.47
TCOF1-201ENST00000323668 NECTIN2Q92692 538 aa18.01■□□□□ 0.47
TCOF1-201ENST00000323668 INSRP06213 1382 aa18■□□□□ 0.47
TCOF1-201ENST00000323668 CAVIN1Q6NZI2 390 aaKnown RBP18■□□□□ 0.47
TCOF1-201ENST00000323668 C14orf93Q9H972 538 aaKnown RBP18■□□□□ 0.47
TCOF1-201ENST00000323668 ALDH1L2Q3SY69 923 aa18■□□□□ 0.47
TCOF1-201ENST00000323668 SYCP2Q9BX26 1530 aa17.99■□□□□ 0.47
TCOF1-201ENST00000323668 NFE2L2Q16236 605 aa17.99■□□□□ 0.47
TCOF1-201ENST00000323668 DUOX2Q9NRD8 1548 aa17.99■□□□□ 0.47
TCOF1-201ENST00000323668 SPINK5Q9NQ38 1064 aaPredicted RBP17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms