RNA–Protein interactions for RNA: ENST00000321356.8

CLK1-201, Transcript of CDC like kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK1, Length 1,888 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-201ENST00000321356 HECW2Q9P2P5 1572 aa11.31□□□□□ -0.6
CLK1-201ENST00000321356 NPATQ14207 1427 aa11.31□□□□□ -0.6
CLK1-201ENST00000321356 NSD3Q9BZ95 1437 aa11.3□□□□□ -0.6
CLK1-201ENST00000321356 CFAP74Q9C0B2 1584 aa11.3□□□□□ -0.6
CLK1-201ENST00000321356 CGNL1Q0VF96 1302 aa11.3□□□□□ -0.6
CLK1-201ENST00000321356 WWC1Q8IX03 1113 aa11.29□□□□□ -0.6
CLK1-201ENST00000321356 C14orf93Q9H972 538 aaKnown RBP11.29□□□□□ -0.6
CLK1-201ENST00000321356 MLH3Q9UHC1 1453 aa11.29□□□□□ -0.6
CLK1-201ENST00000321356 POGZQ7Z3K3 1410 aa11.29□□□□□ -0.6
CLK1-201ENST00000321356 RPGRIP1LQ68CZ1 1315 aa11.27□□□□□ -0.6
CLK1-201ENST00000321356 ABCC3O15438 1527 aa11.27□□□□□ -0.6
CLK1-201ENST00000321356 PIK3C2BO00750 1634 aa11.27□□□□□ -0.6
CLK1-201ENST00000321356 ARHGEF28Q8N1W1 1705 aaKnown RBP11.27□□□□□ -0.61
CLK1-201ENST00000321356 CAMSAP1Q5T5Y3 1602 aa11.27□□□□□ -0.61
CLK1-201ENST00000321356 GLI2P10070 1586 aa11.27□□□□□ -0.61
CLK1-201ENST00000321356 MORC1Q86VD1 984 aa11.27□□□□□ -0.61
CLK1-201ENST00000321356 PUS7Q96PZ0 661 aaKnown RBP11.27□□□□□ -0.61
CLK1-201ENST00000321356 IGHDP01880 384 aa11.26□□□□□ -0.61
CLK1-201ENST00000321356 NCBP3Q53F19 620 aaKnown RBP11.26□□□□□ -0.61
CLK1-201ENST00000321356 RUNDC1Q96C34 613 aa11.26□□□□□ -0.61
CLK1-201ENST00000321356 TULP4Q9NRJ4 1543 aa11.26□□□□□ -0.61
CLK1-201ENST00000321356 CFAP65Q6ZU64 1925 aaKnown RBP11.26□□□□□ -0.61
CLK1-201ENST00000321356 RGS3P49796 1198 aa11.25□□□□□ -0.61
CLK1-201ENST00000321356 AAMPQ13685 434 aa11.25□□□□□ -0.61
CLK1-201ENST00000321356 CLUAP1Q96AJ1 413 aa11.25□□□□□ -0.61
CLK1-201ENST00000321356 SLC12A5Q9H2X9 1139 aa11.25□□□□□ -0.61
CLK1-201ENST00000321356 TRAK1Q9UPV9 953 aa11.25□□□□□ -0.61
CLK1-201ENST00000321356 SIGLEC1Q9BZZ2 1709 aa11.25□□□□□ -0.61
CLK1-201ENST00000321356 ADGRB2O60241 1585 aa11.25□□□□□ -0.61
CLK1-201ENST00000321356 CCDC27Q2M243 656 aa11.25□□□□□ -0.61
CLK1-201ENST00000321356 WDR63Q8IWG1 891 aa11.25□□□□□ -0.61
CLK1-201ENST00000321356 NSD2O96028 1365 aa11.24□□□□□ -0.61
CLK1-201ENST00000321356 ZMYM3Q14202 1370 aa11.24□□□□□ -0.61
CLK1-201ENST00000321356 RARSP54136 660 aaKnown RBP11.24□□□□□ -0.61
CLK1-201ENST00000321356 NEXMIFQ5QGS0 1516 aa11.24□□□□□ -0.61
CLK1-201ENST00000321356 MAPK8IP3Q9UPT6 1336 aa11.24□□□□□ -0.61
CLK1-201ENST00000321356 NFKBIBQ15653 356 aa11.23□□□□□ -0.61
CLK1-201ENST00000321356 TCP11L2Q8N4U5 519 aa11.23□□□□□ -0.61
CLK1-201ENST00000321356 PANK1Q8TE04 598 aa11.23□□□□□ -0.61
CLK1-201ENST00000321356 ANKRD36BQ8N2N9 1353 aa11.23□□□□□ -0.61
CLK1-201ENST00000321356 USP19O94966 1318 aa11.23□□□□□ -0.61
CLK1-201ENST00000321356 SLC4A3P48751 1232 aa11.23□□□□□ -0.61
CLK1-201ENST00000321356 NLRP1Q9C000 1473 aa11.22□□□□□ -0.61
CLK1-201ENST00000321356 DAXXQ9UER7 740 aaPredicted RBP11.22□□□□□ -0.61
CLK1-201ENST00000321356 COG6Q9Y2V7 657 aa11.22□□□□□ -0.61
CLK1-201ENST00000321356 CHGAP10645 457 aaKnown RBP11.21□□□□□ -0.61
CLK1-201ENST00000321356 TMEM132EQ6IEE7 984 aa11.21□□□□□ -0.61
CLK1-201ENST00000321356 CD109Q6YHK3 1445 aa11.21□□□□□ -0.61
CLK1-201ENST00000321356 CANXP27824 592 aaKnown RBP11.21□□□□□ -0.62
CLK1-201ENST00000321356 MTHFSP49914 203 aa11.21□□□□□ -0.62
CLK1-201ENST00000321356 ZFYVE9O95405 1425 aa11.2□□□□□ -0.62
CLK1-201ENST00000321356 CFAP53Q96M91 514 aa11.2□□□□□ -0.62
CLK1-201ENST00000321356 RRP7AQ9Y3A4 280 aaKnown RBP11.2□□□□□ -0.62
CLK1-201ENST00000321356 EVC2Q86UK5 1308 aa11.2□□□□□ -0.62
CLK1-201ENST00000321356 ARHGAP31Q2M1Z3 1444 aa11.19□□□□□ -0.62
CLK1-201ENST00000321356 RLBP1P12271 317 aa11.19□□□□□ -0.62
CLK1-201ENST00000321356 TNNT2P45379 298 aaPredicted RBP11.19□□□□□ -0.62
CLK1-201ENST00000321356 PMFBP1Q8TBY8 1022 aa11.19□□□□□ -0.62
CLK1-201ENST00000321356 ANKRD26Q9UPS8 1709 aa11.19□□□□□ -0.62
CLK1-201ENST00000321356 GSE1Q14687 1217 aa11.19□□□□□ -0.62
CLK1-201ENST00000321356 GGT6Q6P531 493 aa11.19□□□□□ -0.62
CLK1-201ENST00000321356 DIP2CQ9Y2E4 1556 aa11.19□□□□□ -0.62
CLK1-201ENST00000321356 COL3A1P02461 1466 aaPredicted RBP11.18□□□□□ -0.62
CLK1-201ENST00000321356 NEO1Q92859 1461 aa11.18□□□□□ -0.62
CLK1-201ENST00000321356 ABCC11Q96J66 1382 aa11.18□□□□□ -0.62
CLK1-201ENST00000321356 NEUROD2Q15784 382 aa11.18□□□□□ -0.62
CLK1-201ENST00000321356 FRAT1Q92837 279 aaPredicted RBP11.18□□□□□ -0.62
CLK1-201ENST00000321356 CLTCQ00610 1675 aaKnown RBP11.18□□□□□ -0.62
CLK1-201ENST00000321356 VGFO15240 615 aaPredicted RBP11.17□□□□□ -0.62
CLK1-201ENST00000321356 MYH16Q9H6N6 1097 aa11.17□□□□□ -0.62
CLK1-201ENST00000321356 PCDHB15Q9Y5E8 787 aa11.17□□□□□ -0.62
CLK1-201ENST00000321356 SEC24BO95487 1268 aa11.17□□□□□ -0.62
CLK1-201ENST00000321356 TNNQ9UQP3 1299 aa11.17□□□□□ -0.62
CLK1-201ENST00000321356 MED14O60244 1454 aa11.16□□□□□ -0.62
CLK1-201ENST00000321356 CT47B1P0C2W7 299 aaPredicted RBP11.16□□□□□ -0.62
CLK1-201ENST00000321356 IL27Q8NEV9 243 aa11.15□□□□□ -0.62
CLK1-201ENST00000321356 A0A1W2PP64 1363 aa11.15□□□□□ -0.62
CLK1-201ENST00000321356 RICTORQ6R327 1708 aa11.15□□□□□ -0.62
CLK1-201ENST00000321356 NPM1P06748 294 aaKnown RBP eCLIP11.15□□□□□ -0.63
CLK1-201ENST00000321356 MYO5BQ9ULV0 1848 aa11.15□□□□□ -0.63
CLK1-201ENST00000321356 PTPRMP28827 1452 aa11.14□□□□□ -0.63
CLK1-201ENST00000321356 TMEM131LA2VDJ0 1609 aa11.14□□□□□ -0.63
CLK1-201ENST00000321356 FRAT2O75474 233 aaPredicted RBP11.14□□□□□ -0.63
CLK1-201ENST00000321356 U2AF1L5P0DN76 240 aaPredicted RBP11.14□□□□□ -0.63
CLK1-201ENST00000321356 U2AF1Q01081 240 aaKnown RBP eCLIP11.14□□□□□ -0.631e-7■■■□□ 17.6
CLK1-201ENST00000321356 MVPQ14764 893 aaKnown RBP11.14□□□□□ -0.63
CLK1-201ENST00000321356 PLEKHF1Q96S99 279 aa11.14□□□□□ -0.63
CLK1-201ENST00000321356 PDZRN3Q9UPQ7 1066 aa11.14□□□□□ -0.63
CLK1-201ENST00000321356 RWDD1Q9H446 243 aaPredicted RBP11.13□□□□□ -0.63
CLK1-201ENST00000321356 CABP2Q9NPB3 220 aa11.13□□□□□ -0.63
CLK1-201ENST00000321356 PREX1Q8TCU6 1659 aa11.13□□□□□ -0.63
CLK1-201ENST00000321356 CD163L1Q9NR16 1453 aa11.13□□□□□ -0.63
CLK1-201ENST00000321356 BCL2L13Q9BXK5 485 aa11.12□□□□□ -0.63
CLK1-201ENST00000321356 BECN1Q14457 450 aa11.12□□□□□ -0.63
CLK1-201ENST00000321356 ZKSCAN2Q63HK3 967 aa11.12□□□□□ -0.63
CLK1-201ENST00000321356 TBC1D32Q96NH3 1257 aa11.12□□□□□ -0.63
CLK1-201ENST00000321356 IL16Q14005 1332 aa11.12□□□□□ -0.63
CLK1-201ENST00000321356 ATAD2Q6PL18 1390 aa11.12□□□□□ -0.63
CLK1-201ENST00000321356 CDC42BPGQ6DT37 1551 aa11.11□□□□□ -0.63
CLK1-201ENST00000321356 IDI1Q13907 227 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms