RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 SBNO2Q9Y2G9 1366 aa22.58■■□□□ 1.21
COL9A1-201ENST00000320755 ADGRB3O60242 1522 aa22.58■■□□□ 1.2
COL9A1-201ENST00000320755 VGFO15240 615 aaPredicted RBP22.58■■□□□ 1.2
COL9A1-201ENST00000320755 CGNL1Q0VF96 1302 aa22.57■■□□□ 1.2
COL9A1-201ENST00000320755 IDI1Q13907 227 aa22.57■■□□□ 1.2
COL9A1-201ENST00000320755 RUNDC1Q96C34 613 aa22.57■■□□□ 1.2
COL9A1-201ENST00000320755 NEURL4Q96JN8 1562 aa22.57■■□□□ 1.2
COL9A1-201ENST00000320755 U2AF1L5P0DN76 240 aaPredicted RBP22.56■■□□□ 1.2
COL9A1-201ENST00000320755 U2AF1Q01081 240 aaKnown RBP eCLIP22.56■■□□□ 1.2
COL9A1-201ENST00000320755 EVC2Q86UK5 1308 aa22.55■■□□□ 1.2
COL9A1-201ENST00000320755 LMTK2Q8IWU2 1503 aa22.55■■□□□ 1.2
COL9A1-201ENST00000320755 IFT172Q9UG01 1749 aa22.55■■□□□ 1.2
COL9A1-201ENST00000320755 IGHDP01880 384 aa22.55■■□□□ 1.2
COL9A1-201ENST00000320755 SRPK2P78362 688 aaKnown RBP22.55■■□□□ 1.2
COL9A1-201ENST00000320755 CFAP53Q96M91 514 aa22.55■■□□□ 1.2
COL9A1-201ENST00000320755 RPGRIP1LQ68CZ1 1315 aa22.55■■□□□ 1.2
COL9A1-201ENST00000320755 NEFMP07197 916 aa22.54■■□□□ 1.2
COL9A1-201ENST00000320755 FRMPD1Q5SYB0 1578 aa22.54■■□□□ 1.2
COL9A1-201ENST00000320755 FAM161AQ3B820 660 aa22.53■■□□□ 1.2
COL9A1-201ENST00000320755 MLH3Q9UHC1 1453 aa22.53■■□□□ 1.2
COL9A1-201ENST00000320755 CLUAP1Q96AJ1 413 aa22.52■■□□□ 1.2
COL9A1-201ENST00000320755 DAXXQ9UER7 740 aaPredicted RBP22.52■■□□□ 1.2
COL9A1-201ENST00000320755 TNNQ9UQP3 1299 aa22.51■■□□□ 1.19
COL9A1-201ENST00000320755 C8orf34Q49A92 452 aa22.51■■□□□ 1.19
COL9A1-201ENST00000320755 NGEFQ8N5V2 710 aa22.51■■□□□ 1.19
COL9A1-201ENST00000320755 GGNBP2Q9H3C7 697 aa22.51■■□□□ 1.19
COL9A1-201ENST00000320755 MINK1Q8N4C8 1332 aaPredicted RBP22.5■■□□□ 1.19
COL9A1-201ENST00000320755 U2SURPO15042 1029 aaKnown RBP22.5■■□□□ 1.19
COL9A1-201ENST00000320755 ABCC3O15438 1527 aa22.5■■□□□ 1.19
COL9A1-201ENST00000320755 QRICH2Q9H0J4 1663 aa22.5■■□□□ 1.19
COL9A1-201ENST00000320755 ADGRB1O14514 1584 aa22.5■■□□□ 1.19
COL9A1-201ENST00000320755 DDRGK1Q96HY6 314 aa22.49■■□□□ 1.19
COL9A1-201ENST00000320755 HECW2Q9P2P5 1572 aa22.49■■□□□ 1.19
COL9A1-201ENST00000320755 SETBP1Q9Y6X0 1596 aa22.48■■□□□ 1.19
COL9A1-201ENST00000320755 PPLO60437 1756 aa22.48■■□□□ 1.19
COL9A1-201ENST00000320755 RARSP54136 660 aaKnown RBP22.47■■□□□ 1.19
COL9A1-201ENST00000320755 PDE3AQ14432 1141 aa22.47■■□□□ 1.19
COL9A1-201ENST00000320755 POGKQ9P215 609 aa22.46■■□□□ 1.19
COL9A1-201ENST00000320755 MYO3AQ8NEV4 1616 aa22.46■■□□□ 1.19
COL9A1-201ENST00000320755 FBXO31Q5XUX0 539 aaPredicted RBP22.45■■□□□ 1.18
COL9A1-201ENST00000320755 RLBP1P12271 317 aa22.44■■□□□ 1.18
COL9A1-201ENST00000320755 STAG3Q9UJ98 1225 aa22.44■■□□□ 1.18
COL9A1-201ENST00000320755 PRAM1Q96QH2 718 aa22.44■■□□□ 1.18
COL9A1-201ENST00000320755 TSR2Q969E8 191 aaKnown RBP22.42■■□□□ 1.18
COL9A1-201ENST00000320755 ANKRD36BQ8N2N9 1353 aa22.42■■□□□ 1.18
COL9A1-201ENST00000320755 CYB5RLQ6IPT4 315 aa22.42■■□□□ 1.18
COL9A1-201ENST00000320755 YEATS2Q9ULM3 1422 aa22.41■■□□□ 1.18
COL9A1-201ENST00000320755 WDR63Q8IWG1 891 aa22.41■■□□□ 1.18
COL9A1-201ENST00000320755 SIGLEC1Q9BZZ2 1709 aa22.41■■□□□ 1.18
COL9A1-201ENST00000320755 GLI2P10070 1586 aa22.41■■□□□ 1.18
COL9A1-201ENST00000320755 PPM1GO15355 546 aaPredicted RBP22.4■■□□□ 1.18
COL9A1-201ENST00000320755 SLC52A1Q9NWF4 448 aa22.39■■□□□ 1.18
COL9A1-201ENST00000320755 TULP4Q9NRJ4 1543 aa22.39■■□□□ 1.17
COL9A1-201ENST00000320755 CFAP74Q9C0B2 1584 aa22.39■■□□□ 1.17
COL9A1-201ENST00000320755 A0A1W2PP64 1363 aa22.39■■□□□ 1.17
COL9A1-201ENST00000320755 CAMSAP1Q5T5Y3 1602 aa22.38■■□□□ 1.17
COL9A1-201ENST00000320755 PCDHB15Q9Y5E8 787 aa22.38■■□□□ 1.17
COL9A1-201ENST00000320755 SHPRHQ149N8 1683 aa22.38■■□□□ 1.17
COL9A1-201ENST00000320755 MYH16Q9H6N6 1097 aa22.37■■□□□ 1.17
COL9A1-201ENST00000320755 PHF23Q9BUL5 403 aaPredicted RBP22.37■■□□□ 1.17
COL9A1-201ENST00000320755 FBLN1P23142 703 aa22.37■■□□□ 1.17
COL9A1-201ENST00000320755 ZC3H13Q5T200 1668 aaKnown RBP22.36■■□□□ 1.17
COL9A1-201ENST00000320755 NEXMIFQ5QGS0 1516 aa22.36■■□□□ 1.17
COL9A1-201ENST00000320755 FYB1O15117 783 aa22.35■■□□□ 1.17
COL9A1-201ENST00000320755 SEC24BO95487 1268 aa22.34■■□□□ 1.17
COL9A1-201ENST00000320755 TERF2IPQ9NYB0 399 aa22.34■■□□□ 1.17
COL9A1-201ENST00000320755 MLECQ14165 292 aa22.34■■□□□ 1.17
COL9A1-201ENST00000320755 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.34■■□□□ 1.17
COL9A1-201ENST00000320755 MAPK8IP3Q9UPT6 1336 aa22.34■■□□□ 1.17
COL9A1-201ENST00000320755 NEO1Q92859 1461 aa22.33■■□□□ 1.17
COL9A1-201ENST00000320755 EXOSC9Q06265 439 aaKnown RBP22.33■■□□□ 1.17
COL9A1-201ENST00000320755 FTSJ3Q8IY81 847 aaKnown RBP22.33■■□□□ 1.17
COL9A1-201ENST00000320755 CABP1Q9NZU7 370 aa22.33■■□□□ 1.17
COL9A1-201ENST00000320755 PUS7Q96PZ0 661 aaKnown RBP22.33■■□□□ 1.16
COL9A1-201ENST00000320755 DIP2CQ9Y2E4 1556 aa22.32■■□□□ 1.16
COL9A1-201ENST00000320755 CCDC27Q2M243 656 aa22.32■■□□□ 1.16
COL9A1-201ENST00000320755 CDK19Q9BWU1 502 aa22.32■■□□□ 1.16
COL9A1-201ENST00000320755 IQSEC2Q5JU85 1478 aa22.31■■□□□ 1.16
COL9A1-201ENST00000320755 TMPOP42166 694 aaKnown RBP22.31■■□□□ 1.16
COL9A1-201ENST00000320755 SMC4Q9NTJ3 1288 aa22.31■■□□□ 1.16
COL9A1-201ENST00000320755 ARHGEF28Q8N1W1 1705 aaKnown RBP22.31■■□□□ 1.16
COL9A1-201ENST00000320755 PMFBP1Q8TBY8 1022 aa22.3■■□□□ 1.16
COL9A1-201ENST00000320755 NSD2O96028 1365 aa22.3■■□□□ 1.16
COL9A1-201ENST00000320755 NINLQ9Y2I6 1382 aa22.3■■□□□ 1.16
COL9A1-201ENST00000320755 NFKBIBQ15653 356 aa22.3■■□□□ 1.16
COL9A1-201ENST00000320755 WAPLQ7Z5K2 1190 aa22.3■■□□□ 1.16
COL9A1-201ENST00000320755 USP35Q9P2H5 1018 aa22.29■■□□□ 1.16
COL9A1-201ENST00000320755 RIPK4P57078 832 aa22.29■■□□□ 1.16
COL9A1-201ENST00000320755 HDGFL2Q7Z4V5 671 aaPredicted RBP22.29■■□□□ 1.16
COL9A1-201ENST00000320755 PDZRN3Q9UPQ7 1066 aa22.29■■□□□ 1.16
COL9A1-201ENST00000320755 FAM69CQ0P6D2 419 aa22.28■■□□□ 1.16
COL9A1-201ENST00000320755 ZKSCAN2Q63HK3 967 aa22.28■■□□□ 1.16
COL9A1-201ENST00000320755 ABCC11Q96J66 1382 aa22.28■■□□□ 1.16
COL9A1-201ENST00000320755 PIK3C2BO00750 1634 aa22.28■■□□□ 1.16
COL9A1-201ENST00000320755 TRIM35Q9UPQ4 493 aa22.27■■□□□ 1.16
COL9A1-201ENST00000320755 DZIP1LQ8IYY4 767 aaKnown RBP22.27■■□□□ 1.15
COL9A1-201ENST00000320755 PLEKHF1Q96S99 279 aa22.27■■□□□ 1.15
COL9A1-201ENST00000320755 DIAPH1O60610 1272 aaKnown RBP22.26■■□□□ 1.15
COL9A1-201ENST00000320755 RWDD1Q9H446 243 aaPredicted RBP22.26■■□□□ 1.15
COL9A1-201ENST00000320755 YTHDC2Q9H6S0 1430 aaKnown RBP22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms