RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 TAF7LQ5H9L4 462 aa14.02□□□□□ -0.16
VPS39-201ENST00000318006 API5Q9BZZ5 524 aaKnown RBP14.02□□□□□ -0.16
VPS39-201ENST00000318006 ROCK1Q13464 1354 aa14.02□□□□□ -0.16
VPS39-201ENST00000318006 MCTP1Q6DN14 999 aa14.02□□□□□ -0.17
VPS39-201ENST00000318006 CCDC173Q0VFZ6 552 aa14.02□□□□□ -0.17
VPS39-201ENST00000318006 SCAPERQ9BY12 1400 aa14.02□□□□□ -0.17
VPS39-201ENST00000318006 ISY1Q9ULR0 285 aaKnown RBP14.02□□□□□ -0.17
VPS39-201ENST00000318006 PPP2R1AP30153 589 aa14.01□□□□□ -0.17
VPS39-201ENST00000318006 MTHFSP49914 203 aa14.01□□□□□ -0.17
VPS39-201ENST00000318006 HMGN5P82970 282 aaKnown RBP14.01□□□□□ -0.17
VPS39-201ENST00000318006 NOM1Q5C9Z4 860 aaKnown RBP14.01□□□□□ -0.17
VPS39-201ENST00000318006 ARGLU1Q9NWB6 273 aaPredicted RBP14.01□□□□□ -0.17
VPS39-201ENST00000318006 AAMPQ13685 434 aa14.01□□□□□ -0.17
VPS39-201ENST00000318006 GNAI1P63096 354 aa14□□□□□ -0.17
VPS39-201ENST00000318006 H3BQV1 296 aa14□□□□□ -0.17
VPS39-201ENST00000318006 IFFO2Q5TF58 517 aa14□□□□□ -0.17
VPS39-201ENST00000318006 BACH2Q9BYV9 841 aa14□□□□□ -0.17
VPS39-201ENST00000318006 MAP3K1Q13233 1512 aa13.99□□□□□ -0.17
VPS39-201ENST00000318006 RBM10P98175 930 aaKnown RBP13.99□□□□□ -0.17
VPS39-201ENST00000318006 IFT57Q9NWB7 429 aa13.99□□□□□ -0.17
VPS39-201ENST00000318006 CCDC9Q9Y3X0 531 aaKnown RBP13.99□□□□□ -0.17
VPS39-201ENST00000318006 WDR97A6NE52 1622 aa13.98□□□□□ -0.17
VPS39-201ENST00000318006 HMOX1P09601 288 aa13.98□□□□□ -0.17
VPS39-201ENST00000318006 HOMER1Q86YM7 354 aa13.98□□□□□ -0.17
VPS39-201ENST00000318006 RILPL2Q969X0 211 aa13.98□□□□□ -0.17
VPS39-201ENST00000318006 GRIN2AQ12879 1464 aa13.98□□□□□ -0.17
VPS39-201ENST00000318006 PSME1Q06323 249 aa13.98□□□□□ -0.17
VPS39-201ENST00000318006 CCDC70Q6NSX1 233 aa13.97□□□□□ -0.17
VPS39-201ENST00000318006 TCP11L2Q8N4U5 519 aa13.97□□□□□ -0.17
VPS39-201ENST00000318006 CHMP4CQ96CF2 233 aa13.97□□□□□ -0.17
VPS39-201ENST00000318006 CDCA7LQ96GN5 454 aa13.97□□□□□ -0.17
VPS39-201ENST00000318006 MSH5O43196 834 aa13.97□□□□□ -0.17
VPS39-201ENST00000318006 FAM184AQ8NB25 1140 aa13.97□□□□□ -0.17
VPS39-201ENST00000318006 EIF2S2P20042 333 aaKnown RBP13.96□□□□□ -0.18
VPS39-201ENST00000318006 TPM1P09493 284 aa13.96□□□□□ -0.18
VPS39-201ENST00000318006 CREBRFQ8IUR6 639 aa13.96□□□□□ -0.18
VPS39-201ENST00000318006 PNISRQ8TF01 805 aaKnown RBP13.95□□□□□ -0.18
VPS39-201ENST00000318006 TSR1Q2NL82 804 aaKnown RBP13.95□□□□□ -0.18
VPS39-201ENST00000318006 MNS1Q8NEH6 495 aa13.95□□□□□ -0.18
VPS39-201ENST00000318006 SLC52A1Q9NWF4 448 aa13.95□□□□□ -0.18
VPS39-201ENST00000318006 CWC15Q9P013 229 aaKnown RBP13.95□□□□□ -0.18
VPS39-201ENST00000318006 ESPNB1AK53 854 aa13.94□□□□□ -0.18
VPS39-201ENST00000318006 SLC12A5Q9H2X9 1139 aa13.94□□□□□ -0.18
VPS39-201ENST00000318006 PANK1Q8TE04 598 aa13.94□□□□□ -0.18
VPS39-201ENST00000318006 PRAM1Q96QH2 718 aa13.94□□□□□ -0.18
VPS39-201ENST00000318006 RNF214Q8ND24 703 aa13.94□□□□□ -0.18
VPS39-201ENST00000318006 PLB1Q6P1J6 1458 aa13.94□□□□□ -0.18
VPS39-201ENST00000318006 MAGI1Q96QZ7 1491 aaPredicted RBP13.94□□□□□ -0.18
VPS39-201ENST00000318006 MBD3O95983 291 aa13.94□□□□□ -0.18
VPS39-201ENST00000318006 NEXNQ0ZGT2 675 aa13.94□□□□□ -0.18
VPS39-201ENST00000318006 GRPEL1Q9HAV7 217 aa13.94□□□□□ -0.18
VPS39-201ENST00000318006 FKBP5Q13451 457 aaPredicted RBP13.93□□□□□ -0.18
VPS39-201ENST00000318006 INTS3Q68E01 1043 aaKnown RBP13.93□□□□□ -0.18
VPS39-201ENST00000318006 CAVIN1Q6NZI2 390 aaKnown RBP13.93□□□□□ -0.18
VPS39-201ENST00000318006 TTC5Q8N0Z6 440 aa13.93□□□□□ -0.18
VPS39-201ENST00000318006 TSPYL4Q9UJ04 414 aa13.93□□□□□ -0.18
VPS39-201ENST00000318006 ERBINQ96RT1 1412 aa13.93□□□□□ -0.18
VPS39-201ENST00000318006 ARHGEF11O15085 1522 aa13.93□□□□□ -0.18
VPS39-201ENST00000318006 SASS6Q6UVJ0 657 aa13.93□□□□□ -0.18
VPS39-201ENST00000318006 BICD2Q8TD16 824 aa13.93□□□□□ -0.18
VPS39-201ENST00000318006 ACBD3Q9H3P7 528 aa13.93□□□□□ -0.18
VPS39-201ENST00000318006 C9orf78Q9NZ63 289 aaPredicted RBP13.93□□□□□ -0.18
VPS39-201ENST00000318006 NECTIN2Q92692 538 aa13.92□□□□□ -0.18
VPS39-201ENST00000318006 CCDC141Q6ZP82 1450 aa13.92□□□□□ -0.18
VPS39-201ENST00000318006 TPD52L1Q16890 204 aaPredicted RBP13.92□□□□□ -0.18
VPS39-201ENST00000318006 RASSF8Q8NHQ8 419 aa13.92□□□□□ -0.18
VPS39-201ENST00000318006 ABCC5O15440 1437 aa13.92□□□□□ -0.18
VPS39-201ENST00000318006 ANKRD30BQ9BXX2 1392 aa13.92□□□□□ -0.18
VPS39-201ENST00000318006 HSP90B2PQ58FF3 399 aa13.91□□□□□ -0.18
VPS39-201ENST00000318006 PTPN23Q9H3S7 1636 aa13.91□□□□□ -0.18
VPS39-201ENST00000318006 CLSTN1O94985 981 aa13.91□□□□□ -0.18
VPS39-201ENST00000318006 NLRP6P59044 892 aa13.91□□□□□ -0.18
VPS39-201ENST00000318006 UBE2Q2Q8WVN8 375 aa13.91□□□□□ -0.18
VPS39-201ENST00000318006 CAMSAP2Q08AD1 1489 aa13.91□□□□□ -0.18
VPS39-201ENST00000318006 RAPGEF3O95398 923 aa13.9□□□□□ -0.18
VPS39-201ENST00000318006 ZKSCAN1P17029 563 aaPredicted RBP13.9□□□□□ -0.18
VPS39-201ENST00000318006 EVA1CP58658 441 aa13.9□□□□□ -0.18
VPS39-201ENST00000318006 RPGRIP1LQ68CZ1 1315 aa13.9□□□□□ -0.18
VPS39-201ENST00000318006 RUFY2Q8WXA3 655 aa13.9□□□□□ -0.18
VPS39-201ENST00000318006 LNPKQ9C0E8 428 aa13.9□□□□□ -0.18
VPS39-201ENST00000318006 TXNDC2Q86VQ3 553 aa13.9□□□□□ -0.18
VPS39-201ENST00000318006 SMC3Q9UQE7 1217 aa13.9□□□□□ -0.18
VPS39-201ENST00000318006 LETM1O95202 739 aaPredicted RBP13.89□□□□□ -0.19
VPS39-201ENST00000318006 DDX58O95786 925 aaKnown RBP13.89□□□□□ -0.19
VPS39-201ENST00000318006 CCDC184Q52MB2 194 aa13.89□□□□□ -0.19
VPS39-201ENST00000318006 UQCRHLA0A096LP55 91 aa13.89□□□□□ -0.19
VPS39-201ENST00000318006 PES1O00541 588 aaKnown RBP13.89□□□□□ -0.19
VPS39-201ENST00000318006 UQCRHP07919 91 aa13.89□□□□□ -0.19
VPS39-201ENST00000318006 PRKAR2BP31323 418 aa13.89□□□□□ -0.19
VPS39-201ENST00000318006 TSPY26PQ9H489 355 aa13.89□□□□□ -0.19
VPS39-201ENST00000318006 KIF21AQ7Z4S6 1674 aa13.89□□□□□ -0.19
VPS39-201ENST00000318006 APPP05067 770 aa13.88□□□□□ -0.19
VPS39-201ENST00000318006 GTF2E1P29083 439 aaPredicted RBP13.88□□□□□ -0.19
VPS39-201ENST00000318006 ANO2Q9NQ90 1003 aa13.88□□□□□ -0.19
VPS39-201ENST00000318006 CDC45O75419 566 aa13.88□□□□□ -0.19
VPS39-201ENST00000318006 VPS37CA5D8V6 355 aaPredicted RBP13.88□□□□□ -0.19
VPS39-201ENST00000318006 IPO7O95373 1038 aaKnown RBP13.88□□□□□ -0.19
VPS39-201ENST00000318006 CALRP27797 417 aaKnown RBP13.88□□□□□ -0.19
VPS39-201ENST00000318006 AKNAQ7Z591 1439 aa13.87□□□□□ -0.19
VPS39-201ENST00000318006 CDK19Q9BWU1 502 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms