RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 GOLGA6L19H0YKK7 550 aa4.88□□□□□ -1.63
USH2A-201ENST00000307340 ERC1Q8IUD2 1116 aa4.88□□□□□ -1.63
USH2A-201ENST00000307340 TULP1O00294 542 aaPredicted RBP4.88□□□□□ -1.63
USH2A-201ENST00000307340 EPB41L2O43491 1005 aaKnown RBP4.88□□□□□ -1.63
USH2A-201ENST00000307340 KDM5AP29375 1690 aaKnown RBP4.88□□□□□ -1.63
USH2A-201ENST00000307340 FOXD1Q16676 465 aa4.88□□□□□ -1.63
USH2A-201ENST00000307340 ZNHIT6Q9NWK9 470 aaKnown RBP4.88□□□□□ -1.63
USH2A-201ENST00000307340 RTEL1-TNFRSF6BF6WH68 1400 aa4.88□□□□□ -1.63
USH2A-201ENST00000307340 PNISRQ8TF01 805 aaKnown RBP4.88□□□□□ -1.63
USH2A-201ENST00000307340 GCC1Q96CN9 775 aa4.88□□□□□ -1.63
USH2A-201ENST00000307340 FEZ1Q99689 392 aa4.88□□□□□ -1.63
USH2A-201ENST00000307340 GNL2Q13823 731 aaKnown RBP4.88□□□□□ -1.63
USH2A-201ENST00000307340 DNAI2Q9GZS0 605 aa4.88□□□□□ -1.63
USH2A-201ENST00000307340 LAMC1P11047 1609 aa4.88□□□□□ -1.63
USH2A-201ENST00000307340 DDX12PQ92771 950 aa4.87□□□□□ -1.63
USH2A-201ENST00000307340 PES1O00541 588 aaKnown RBP4.87□□□□□ -1.63
USH2A-201ENST00000307340 OS9Q13438 667 aaPredicted RBP4.87□□□□□ -1.63
USH2A-201ENST00000307340 GSE1Q14687 1217 aa4.87□□□□□ -1.63
USH2A-201ENST00000307340 HOMEZQ8IX15 550 aa4.87□□□□□ -1.63
USH2A-201ENST00000307340 USP8P40818 1118 aa4.87□□□□□ -1.63
USH2A-201ENST00000307340 UGGT2Q9NYU1 1516 aa4.87□□□□□ -1.63
USH2A-201ENST00000307340 RAD54L2Q9Y4B4 1467 aa4.87□□□□□ -1.63
USH2A-201ENST00000307340 JMYQ8N9B5 988 aa4.87□□□□□ -1.63
USH2A-201ENST00000307340 DDX11Q96FC9 970 aa4.87□□□□□ -1.63
USH2A-201ENST00000307340 WDR63Q8IWG1 891 aa4.87□□□□□ -1.63
USH2A-201ENST00000307340 GNAI1P63096 354 aa4.87□□□□□ -1.63
USH2A-201ENST00000307340 IGF1RP08069 1367 aa4.87□□□□□ -1.63
USH2A-201ENST00000307340 ZKSCAN2Q63HK3 967 aa4.86□□□□□ -1.63
USH2A-201ENST00000307340 MRE11P49959 708 aa4.86□□□□□ -1.63
USH2A-201ENST00000307340 CERS3Q8IU89 383 aa4.86□□□□□ -1.63
USH2A-201ENST00000307340 NPC1L1Q9UHC9 1359 aa4.86□□□□□ -1.63
USH2A-201ENST00000307340 BRMS1Q9HCU9 246 aa4.86□□□□□ -1.63
USH2A-201ENST00000307340 BICRAQ9NZM4 1560 aa4.86□□□□□ -1.63
USH2A-201ENST00000307340 C9orf84Q5VXU9 1444 aa4.86□□□□□ -1.63
USH2A-201ENST00000307340 DACH1Q9UI36 760 aa4.86□□□□□ -1.63
USH2A-201ENST00000307340 TRIM21P19474 475 aaKnown RBP4.86□□□□□ -1.63
USH2A-201ENST00000307340 CEP89Q96ST8 783 aa4.86□□□□□ -1.63
USH2A-201ENST00000307340 PRKRIP1Q9H875 184 aaPredicted RBP4.85□□□□□ -1.63
USH2A-201ENST00000307340 RRP7BPQ9NSQ0 103 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 P3H3Q8IVL6 736 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 GPRASP1Q5JY77 1395 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 GOLGA6L7A0A1B0GV03 622 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 CCDC173Q0VFZ6 552 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 JPH4Q96JJ6 628 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 ZNF287Q9HBT7 754 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 PCF11O94913 1555 aaKnown RBP4.85□□□□□ -1.63
USH2A-201ENST00000307340 RABEP1Q15276 862 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 PPP4R3BQ5MIZ7 849 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 CHMP5Q9NZZ3 219 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 ZRSR2Q15696 482 aaKnown RBP4.85□□□□□ -1.63
USH2A-201ENST00000307340 RBM26Q5T8P6 1007 aaKnown RBP4.85□□□□□ -1.63
USH2A-201ENST00000307340 CFAP45Q9UL16 551 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 PKD2Q13563 968 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.85□□□□□ -1.63
USH2A-201ENST00000307340 FAM13BQ9NYF5 915 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 ARHGEF5Q12774 1597 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 RUNDC1Q96C34 613 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 GOLGA6L9A6NEM1 432 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 KDM5DQ9BY66 1539 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 HSP90B2PQ58FF3 399 aa4.85□□□□□ -1.63
USH2A-201ENST00000307340 FAM193AP78312 1265 aa4.84□□□□□ -1.63
USH2A-201ENST00000307340 DEF6Q9H4E7 631 aa4.84□□□□□ -1.63
USH2A-201ENST00000307340 KRT32Q14532 448 aa4.84□□□□□ -1.63
USH2A-201ENST00000307340 ARAP3Q8WWN8 1544 aa4.84□□□□□ -1.63
USH2A-201ENST00000307340 SYNE3Q6ZMZ3 975 aa4.84□□□□□ -1.63
USH2A-201ENST00000307340 CDKL5O76039 1030 aa4.84□□□□□ -1.63
USH2A-201ENST00000307340 SART3Q15020 963 aaKnown RBP4.84□□□□□ -1.63
USH2A-201ENST00000307340 REREQ9P2R6 1566 aa4.84□□□□□ -1.63
USH2A-201ENST00000307340 SH3BGRP55822 239 aaPredicted RBP4.84□□□□□ -1.63
USH2A-201ENST00000307340 HS1BP3Q53T59 392 aa4.84□□□□□ -1.63
USH2A-201ENST00000307340 GNAI3P08754 354 aa4.84□□□□□ -1.63
USH2A-201ENST00000307340 CHGAP10645 457 aaKnown RBP4.84□□□□□ -1.63
USH2A-201ENST00000307340 CREBRFQ8IUR6 639 aa4.84□□□□□ -1.63
USH2A-201ENST00000307340 DRC7Q8IY82 874 aa4.84□□□□□ -1.63
USH2A-201ENST00000307340 GOLGA6L10A0A0M3HER8 536 aa4.84□□□□□ -1.63
USH2A-201ENST00000307340 SAMD9Q5K651 1589 aa4.84□□□□□ -1.63
USH2A-201ENST00000307340 CTAGE5O15320 804 aa4.84□□□□□ -1.64
USH2A-201ENST00000307340 ALDH1L2Q3SY69 923 aa4.84□□□□□ -1.64
USH2A-201ENST00000307340 SRPK2P78362 688 aaKnown RBP4.84□□□□□ -1.64
USH2A-201ENST00000307340 ANKRD18AQ8IVF6 992 aa4.84□□□□□ -1.64
USH2A-201ENST00000307340 AK7Q96M32 723 aa4.84□□□□□ -1.64
USH2A-201ENST00000307340 CDC42BPAQ5VT25 1732 aa4.84□□□□□ -1.64
USH2A-201ENST00000307340 ABCA5Q8WWZ7 1642 aa4.84□□□□□ -1.64
USH2A-201ENST00000307340 NEMFO60524 1076 aa4.84□□□□□ -1.64
USH2A-201ENST00000307340 TRAF1Q13077 416 aa4.84□□□□□ -1.64
USH2A-201ENST00000307340 HOOK3Q86VS8 718 aa4.84□□□□□ -1.64
USH2A-201ENST00000307340 IL16Q14005 1332 aa4.84□□□□□ -1.64
USH2A-201ENST00000307340 TRDNQ13061 729 aa4.83□□□□□ -1.64
USH2A-201ENST00000307340 CLASP1Q7Z460 1538 aa4.83□□□□□ -1.64
USH2A-201ENST00000307340 ZNF518AQ6AHZ1 1483 aa4.83□□□□□ -1.64
USH2A-201ENST00000307340 TRHP20396 242 aaPredicted RBP4.83□□□□□ -1.64
USH2A-201ENST00000307340 PLCD3Q8N3E9 789 aa4.83□□□□□ -1.64
USH2A-201ENST00000307340 CHIC2Q9UKJ5 165 aa4.83□□□□□ -1.64
USH2A-201ENST00000307340 AK9Q5TCS8 1911 aa4.83□□□□□ -1.64
USH2A-201ENST00000307340 CDK13Q14004 1512 aaKnown RBP4.83□□□□□ -1.64
USH2A-201ENST00000307340 UBE2Q2Q8WVN8 375 aa4.83□□□□□ -1.64
USH2A-201ENST00000307340 TNNT3P45378 269 aaPredicted RBP4.83□□□□□ -1.64
USH2A-201ENST00000307340 GAS2L2Q8NHY3 880 aa4.83□□□□□ -1.64
USH2A-201ENST00000307340 CROCC2H7BZ55 1655 aa4.83□□□□□ -1.64
USH2A-201ENST00000307340 KDM2AQ9Y2K7 1162 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms