RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 FILIP1LQ4L180 1135 aa10.47□□□□□ -0.73
NIPBL-201ENST00000282516 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.46□□□□□ -0.73
NIPBL-201ENST00000282516 ERLIN1O75477 346 aa10.46□□□□□ -0.73
NIPBL-201ENST00000282516 TTLL5Q6EMB2 1281 aa10.46□□□□□ -0.73
NIPBL-201ENST00000282516 GGT6Q6P531 493 aa10.46□□□□□ -0.73
NIPBL-201ENST00000282516 EIF3JO75822 258 aaKnown RBP10.46□□□□□ -0.73
NIPBL-201ENST00000282516 HSP90AB4PQ58FF6 505 aa10.46□□□□□ -0.74
NIPBL-201ENST00000282516 TEFQ10587 303 aa10.46□□□□□ -0.74
NIPBL-201ENST00000282516 SDF4Q9BRK5 362 aa10.46□□□□□ -0.74
NIPBL-201ENST00000282516 TRIM5Q9C035 493 aa10.46□□□□□ -0.74
NIPBL-201ENST00000282516 BAZ1AQ9NRL2 1556 aaPredicted RBP10.45□□□□□ -0.74
NIPBL-201ENST00000282516 CLASRPQ8N2M8 674 aaKnown RBP10.45□□□□□ -0.74
NIPBL-201ENST00000282516 PSMA5P28066 241 aa10.45□□□□□ -0.74
NIPBL-201ENST00000282516 TAF3Q5VWG9 929 aa10.45□□□□□ -0.74
NIPBL-201ENST00000282516 CCAR1Q8IX12 1150 aaKnown RBP10.45□□□□□ -0.74
NIPBL-201ENST00000282516 RBM33Q96EV2 1170 aaKnown RBP10.45□□□□□ -0.74
NIPBL-201ENST00000282516 ANKRD62A6NC57 917 aa10.45□□□□□ -0.74
NIPBL-201ENST00000282516 MSH5O43196 834 aa10.45□□□□□ -0.74
NIPBL-201ENST00000282516 PDCP20941 246 aa10.45□□□□□ -0.74
NIPBL-201ENST00000282516 COG3Q96JB2 828 aa10.45□□□□□ -0.74
NIPBL-201ENST00000282516 SLC26A8Q96RN1 970 aa10.45□□□□□ -0.74
NIPBL-201ENST00000282516 FOSBP53539 338 aa10.44□□□□□ -0.74
NIPBL-201ENST00000282516 CCDC18Q5T9S5 1454 aa10.44□□□□□ -0.74
NIPBL-201ENST00000282516 STIM1Q13586 685 aa10.44□□□□□ -0.74
NIPBL-201ENST00000282516 DESP17661 470 aa10.44□□□□□ -0.74
NIPBL-201ENST00000282516 VPS8Q8N3P4 1428 aa10.44□□□□□ -0.74
NIPBL-201ENST00000282516 MBD3O95983 291 aa10.44□□□□□ -0.74
NIPBL-201ENST00000282516 SLC3A2P08195 630 aaKnown RBP10.44□□□□□ -0.74
NIPBL-201ENST00000282516 MRE11P49959 708 aa10.43□□□□□ -0.74
NIPBL-201ENST00000282516 RRP1P56182 461 aaKnown RBP10.43□□□□□ -0.74
NIPBL-201ENST00000282516 CAVIN1Q6NZI2 390 aaKnown RBP10.43□□□□□ -0.74
NIPBL-201ENST00000282516 AAMPQ13685 434 aa10.43□□□□□ -0.74
NIPBL-201ENST00000282516 ZBED9Q6R2W3 1325 aa10.43□□□□□ -0.74
NIPBL-201ENST00000282516 API5Q9BZZ5 524 aaKnown RBP10.43□□□□□ -0.74
NIPBL-201ENST00000282516 KRT18P05783 430 aaKnown RBP10.43□□□□□ -0.74
NIPBL-201ENST00000282516 DEF6Q9H4E7 631 aa10.43□□□□□ -0.74
NIPBL-201ENST00000282516 ZNF396Q96N95 335 aaPredicted RBP10.42□□□□□ -0.74
NIPBL-201ENST00000282516 CCDC91Q7Z6B0 441 aa10.42□□□□□ -0.74
NIPBL-201ENST00000282516 JMYQ8N9B5 988 aa10.42□□□□□ -0.74
NIPBL-201ENST00000282516 SKIDA1Q1XH10 827 aa10.42□□□□□ -0.74
NIPBL-201ENST00000282516 TSPY26PQ9H489 355 aa10.42□□□□□ -0.74
NIPBL-201ENST00000282516 NGEFQ8N5V2 710 aa10.42□□□□□ -0.74
NIPBL-201ENST00000282516 RRP7AQ9Y3A4 280 aaKnown RBP10.42□□□□□ -0.74
NIPBL-201ENST00000282516 FANCIQ9NVI1 1328 aa10.42□□□□□ -0.74
NIPBL-201ENST00000282516 KIF3BO15066 747 aa10.41□□□□□ -0.74
NIPBL-201ENST00000282516 CCDC144AA2RUR9 1427 aa10.41□□□□□ -0.74
NIPBL-201ENST00000282516 CCDC181Q5TID7 509 aa10.41□□□□□ -0.74
NIPBL-201ENST00000282516 EVA1CP58658 441 aa10.41□□□□□ -0.74
NIPBL-201ENST00000282516 CENPHQ9H3R5 247 aa10.41□□□□□ -0.74
NIPBL-201ENST00000282516 CUX2O14529 1486 aa10.41□□□□□ -0.74
NIPBL-201ENST00000282516 CCDC112Q8NEF3 446 aa10.41□□□□□ -0.74
NIPBL-201ENST00000282516 GIMAP7Q8NHV1 300 aa10.41□□□□□ -0.74
NIPBL-201ENST00000282516 FEZ1Q99689 392 aa10.41□□□□□ -0.74
NIPBL-201ENST00000282516 RAB3GAP2Q9H2M9 1393 aa10.41□□□□□ -0.74
NIPBL-201ENST00000282516 PPFIBP1Q86W92 1011 aa10.4□□□□□ -0.74
NIPBL-201ENST00000282516 EVC2Q86UK5 1308 aa10.4□□□□□ -0.74
NIPBL-201ENST00000282516 IKQ13123 557 aaPredicted RBP10.4□□□□□ -0.74
NIPBL-201ENST00000282516 TRIM21P19474 475 aaKnown RBP10.4□□□□□ -0.75
NIPBL-201ENST00000282516 SAMD1Q6SPF0 538 aaPredicted RBP10.4□□□□□ -0.75
NIPBL-201ENST00000282516 TAX1BP1Q86VP1 789 aa10.4□□□□□ -0.75
NIPBL-201ENST00000282516 CARMIL1Q5VZK9 1371 aa10.39□□□□□ -0.75
NIPBL-201ENST00000282516 FOXD1Q16676 465 aa10.39□□□□□ -0.75
NIPBL-201ENST00000282516 NACADO15069 1562 aa10.39□□□□□ -0.75
NIPBL-201ENST00000282516 CDC45O75419 566 aa10.39□□□□□ -0.75
NIPBL-201ENST00000282516 DZIP1LQ8IYY4 767 aaKnown RBP10.39□□□□□ -0.75
NIPBL-201ENST00000282516 DACH1Q9UI36 760 aa10.39□□□□□ -0.75
NIPBL-201ENST00000282516 PKNOX2Q96KN3 472 aa10.39□□□□□ -0.75
NIPBL-201ENST00000282516 LRRCC1Q9C099 1032 aa10.39□□□□□ -0.75
NIPBL-201ENST00000282516 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.38□□□□□ -0.752e-7■■■□□ 18.8
NIPBL-201ENST00000282516 STAMBPO95630 424 aa10.38□□□□□ -0.75
NIPBL-201ENST00000282516 C22orf23Q9BZE7 217 aa10.38□□□□□ -0.75
NIPBL-201ENST00000282516 SLC4A3P48751 1232 aa10.38□□□□□ -0.75
NIPBL-201ENST00000282516 MPHOSPH9Q99550 1183 aa10.38□□□□□ -0.75
NIPBL-201ENST00000282516 HIP1O00291 1037 aa10.38□□□□□ -0.75
NIPBL-201ENST00000282516 CNTROBQ8N137 903 aa10.38□□□□□ -0.75
NIPBL-201ENST00000282516 PDCL3Q9H2J4 239 aa10.38□□□□□ -0.75
NIPBL-201ENST00000282516 TBC1D2BQ9UPU7 963 aa10.38□□□□□ -0.75
NIPBL-201ENST00000282516 SPATA24Q86W54 205 aa10.37□□□□□ -0.75
NIPBL-201ENST00000282516 CBFA2T2O43439 604 aa10.37□□□□□ -0.75
NIPBL-201ENST00000282516 EFCAB2Q5VUJ9 269 aa10.37□□□□□ -0.75
NIPBL-201ENST00000282516 EIF2S2P20042 333 aaKnown RBP10.37□□□□□ -0.75
NIPBL-201ENST00000282516 CCDC97Q96F63 343 aaPredicted RBP10.37□□□□□ -0.75
NIPBL-201ENST00000282516 BCL2L13Q9BXK5 485 aa10.37□□□□□ -0.75
NIPBL-201ENST00000282516 WASHC4Q2M389 1173 aa10.37□□□□□ -0.75
NIPBL-201ENST00000282516 NEBLO76041 1014 aa10.37□□□□□ -0.75
NIPBL-201ENST00000282516 FKBP5Q13451 457 aaPredicted RBP10.37□□□□□ -0.75
NIPBL-201ENST00000282516 CCDC27Q2M243 656 aa10.37□□□□□ -0.75
NIPBL-201ENST00000282516 CEP63Q96MT8 703 aa10.36□□□□□ -0.75
NIPBL-201ENST00000282516 CRBNQ96SW2 442 aa10.36□□□□□ -0.75
NIPBL-201ENST00000282516 DNAI2Q9GZS0 605 aa10.36□□□□□ -0.75
NIPBL-201ENST00000282516 FYB1O15117 783 aa10.36□□□□□ -0.75
NIPBL-201ENST00000282516 CCDC192P0DO97 292 aa10.36□□□□□ -0.75
NIPBL-201ENST00000282516 MEX3CQ5U5Q3 659 aaKnown RBP10.36□□□□□ -0.75
NIPBL-201ENST00000282516 BCL11BQ9C0K0 894 aaPredicted RBP10.36□□□□□ -0.75
NIPBL-201ENST00000282516 GOLGA6L10A0A0M3HER8 536 aa10.36□□□□□ -0.75
NIPBL-201ENST00000282516 NF2P35240 595 aa10.36□□□□□ -0.75
NIPBL-201ENST00000282516 MCM2P49736 904 aa10.36□□□□□ -0.75
NIPBL-201ENST00000282516 STK38Q15208 465 aa10.36□□□□□ -0.75
NIPBL-201ENST00000282516 JAKMIP3Q5VZ66 844 aa10.36□□□□□ -0.75
NIPBL-201ENST00000282516 MIA2Q96PC5 1412 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms