RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 TECPR2O15040 1411 aa18.96■□□□□ 0.63
CD44-203ENST00000278386 FMN2Q9NZ56 1722 aa18.96■□□□□ 0.63
CD44-203ENST00000278386 COL22A1Q8NFW1 1626 aaPredicted RBP18.95■□□□□ 0.62
CD44-203ENST00000278386 LRPPRCP42704 1394 aaKnown RBP18.94■□□□□ 0.62
CD44-203ENST00000278386 RXRBP28702 533 aa18.94■□□□□ 0.62
CD44-203ENST00000278386 CDK12Q9NYV4 1490 aaPredicted RBP18.93■□□□□ 0.62
CD44-203ENST00000278386 MARF1Q9Y4F3 1742 aaKnown RBP18.93■□□□□ 0.62
CD44-203ENST00000278386 SOS2Q07890 1332 aaPredicted RBP18.93■□□□□ 0.62
CD44-203ENST00000278386 ACIN1Q9UKV3 1341 aaKnown RBP18.93■□□□□ 0.62
CD44-203ENST00000278386 KIF1AQ12756 1690 aa18.92■□□□□ 0.62
CD44-203ENST00000278386 YTHDC2Q9H6S0 1430 aaKnown RBP18.91■□□□□ 0.62
CD44-203ENST00000278386 MYOM2P54296 1465 aa18.91■□□□□ 0.62
CD44-203ENST00000278386 ADAMTS2O95450 1211 aa18.91■□□□□ 0.62
CD44-203ENST00000278386 ESCO1Q5FWF5 840 aa18.91■□□□□ 0.62
CD44-203ENST00000278386 TMEM132EQ6IEE7 984 aa18.91■□□□□ 0.62
CD44-203ENST00000278386 WAPLQ7Z5K2 1190 aa18.9■□□□□ 0.62
CD44-203ENST00000278386 NPHP3Q7Z494 1330 aa18.9■□□□□ 0.62
CD44-203ENST00000278386 RGPD8O14715 1765 aaPredicted RBP18.9■□□□□ 0.62
CD44-203ENST00000278386 RAB3GAP2Q9H2M9 1393 aa18.9■□□□□ 0.62
CD44-203ENST00000278386 PLEKHH1Q9ULM0 1364 aa18.9■□□□□ 0.62
CD44-203ENST00000278386 PXDNQ92626 1479 aa18.9■□□□□ 0.62
CD44-203ENST00000278386 NUTM2FA1L443 756 aa18.89■□□□□ 0.61
CD44-203ENST00000278386 ABCC11Q96J66 1382 aa18.89■□□□□ 0.61
CD44-203ENST00000278386 RGS12O14924 1447 aa18.89■□□□□ 0.61
CD44-203ENST00000278386 NGLY1Q96IV0 654 aa18.88■□□□□ 0.61
CD44-203ENST00000278386 NRXN1Q9ULB1 1477 aa18.88■□□□□ 0.61
CD44-203ENST00000278386 XPCQ01831 940 aaPredicted RBP18.85■□□□□ 0.61
CD44-203ENST00000278386 QTRT2Q9H974 415 aaKnown RBP18.85■□□□□ 0.61
CD44-203ENST00000278386 RBM6P78332 1123 aaKnown RBP18.84■□□□□ 0.61
CD44-203ENST00000278386 UPF1Q92900 1129 aaKnown RBP eCLIP18.84■□□□□ 0.61
CD44-203ENST00000278386 DHX57Q6P158 1386 aaKnown RBP18.83■□□□□ 0.61
CD44-203ENST00000278386 FOXO3O43524 673 aa18.83■□□□□ 0.6
CD44-203ENST00000278386 CFAP70Q5T0N1 1121 aa18.82■□□□□ 0.6
CD44-203ENST00000278386 USP21Q9UK80 565 aa18.82■□□□□ 0.6
CD44-203ENST00000278386 C14orf93Q9H972 538 aaKnown RBP18.81■□□□□ 0.6
CD44-203ENST00000278386 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.8■□□□□ 0.6
CD44-203ENST00000278386 DLC1Q96QB1 1528 aa18.79■□□□□ 0.6
CD44-203ENST00000278386 USP32Q8NFA0 1604 aa18.79■□□□□ 0.6
CD44-203ENST00000278386 SAFB2Q14151 953 aaKnown RBP eCLIP18.79■□□□□ 0.6
CD44-203ENST00000278386 ADGRB2O60241 1585 aa18.79■□□□□ 0.6
CD44-203ENST00000278386 ABCA3Q99758 1704 aa18.78■□□□□ 0.6
CD44-203ENST00000278386 TRPC5Q9UL62 973 aaPredicted RBP18.78■□□□□ 0.6
CD44-203ENST00000278386 ADGRB1O14514 1584 aa18.77■□□□□ 0.6
CD44-203ENST00000278386 ATRNO75882 1429 aa18.77■□□□□ 0.6
CD44-203ENST00000278386 PRAM1Q96QH2 718 aa18.77■□□□□ 0.6
CD44-203ENST00000278386 SIRT1Q96EB6 747 aa18.76■□□□□ 0.59
CD44-203ENST00000278386 TNS3Q68CZ2 1445 aa18.75■□□□□ 0.59
CD44-203ENST00000278386 FNBP4Q8N3X1 1017 aaPredicted RBP18.75■□□□□ 0.59
CD44-203ENST00000278386 POGKQ9P215 609 aa18.75■□□□□ 0.59
CD44-203ENST00000278386 PLCH1Q4KWH8 1693 aa18.75■□□□□ 0.59
CD44-203ENST00000278386 ARHGEF28Q8N1W1 1705 aaKnown RBP18.74■□□□□ 0.59
CD44-203ENST00000278386 SPATA31A3Q5VYP0 1347 aa18.74■□□□□ 0.59
CD44-203ENST00000278386 ATAD2Q6PL18 1390 aa18.73■□□□□ 0.59
CD44-203ENST00000278386 KRT28Q7Z3Y7 464 aa18.73■□□□□ 0.59
CD44-203ENST00000278386 PHF8Q9UPP1 1060 aa18.73■□□□□ 0.59
CD44-203ENST00000278386 BCL9LQ86UU0 1499 aa18.72■□□□□ 0.59
CD44-203ENST00000278386 HAP1P54257 671 aaPredicted RBP18.72■□□□□ 0.59
CD44-203ENST00000278386 KDM2AQ9Y2K7 1162 aa18.72■□□□□ 0.59
CD44-203ENST00000278386 ANKARQ7Z5J8 1434 aa18.72■□□□□ 0.59
CD44-203ENST00000278386 ITSN1Q15811 1721 aa18.71■□□□□ 0.59
CD44-203ENST00000278386 PLEKHG5O94827 1062 aa18.7■□□□□ 0.58
CD44-203ENST00000278386 DCAF11Q8TEB1 546 aa18.7■□□□□ 0.58
CD44-203ENST00000278386 TRPM3Q9HCF6 1732 aaPredicted RBP18.7■□□□□ 0.58
CD44-203ENST00000278386 NWD2Q9ULI1 1742 aa18.7■□□□□ 0.58
CD44-203ENST00000278386 TRAK1Q9UPV9 953 aa18.7■□□□□ 0.58
CD44-203ENST00000278386 TULP4Q9NRJ4 1543 aa18.69■□□□□ 0.58
CD44-203ENST00000278386 PSME1Q06323 249 aa18.69■□□□□ 0.58
CD44-203ENST00000278386 LMOD2Q6P5Q4 547 aa18.69■□□□□ 0.58
CD44-203ENST00000278386 SLIT2O94813 1529 aa18.69■□□□□ 0.58
CD44-203ENST00000278386 GLI3P10071 1580 aa18.68■□□□□ 0.58
CD44-203ENST00000278386 HIRIP3Q9BW71 556 aaPredicted RBP18.68■□□□□ 0.58
CD44-203ENST00000278386 MINK1Q8N4C8 1332 aaPredicted RBP18.68■□□□□ 0.58
CD44-203ENST00000278386 EIF3AQ14152 1382 aaKnown RBP18.68■□□□□ 0.58
CD44-203ENST00000278386 PMFBP1Q8TBY8 1022 aa18.67■□□□□ 0.58
CD44-203ENST00000278386 BRWD3Q6RI45 1802 aa18.67■□□□□ 0.58
CD44-203ENST00000278386 SBNO1A3KN83 1393 aa18.67■□□□□ 0.58
CD44-203ENST00000278386 ARHGEF10O15013 1369 aa18.67■□□□□ 0.58
CD44-203ENST00000278386 ALS2Q96Q42 1657 aa18.66■□□□□ 0.58
CD44-203ENST00000278386 RALGAPBQ86X10 1494 aa18.65■□□□□ 0.58
CD44-203ENST00000278386 KIAA1210Q9ULL0 1709 aa18.64■□□□□ 0.57
CD44-203ENST00000278386 UNC5CLQ8IV45 518 aa18.64■□□□□ 0.57
CD44-203ENST00000278386 CABLES1Q8TDN4 633 aa18.64■□□□□ 0.57
CD44-203ENST00000278386 GJD4Q96KN9 370 aaPredicted RBP18.64■□□□□ 0.57
CD44-203ENST00000278386 EP400Q96L91 3159 aa18.63■□□□□ 0.57
CD44-203ENST00000278386 HRCP23327 699 aa18.63■□□□□ 0.57
CD44-203ENST00000278386 NRAPQ86VF7 1730 aa18.63■□□□□ 0.57
CD44-203ENST00000278386 STAC3Q96MF2 364 aa18.62■□□□□ 0.57
CD44-203ENST00000278386 GPRASP1Q5JY77 1395 aa18.62■□□□□ 0.57
CD44-203ENST00000278386 CRYBG1Q9Y4K1 1723 aa18.62■□□□□ 0.57
CD44-203ENST00000278386 COL14A1Q05707 1796 aaKnown RBP18.6■□□□□ 0.57
CD44-203ENST00000278386 PRR36Q9H6K5 1346 aa18.6■□□□□ 0.57
CD44-203ENST00000278386 TOPAZ1Q8N9V7 1692 aa18.6■□□□□ 0.57
CD44-203ENST00000278386 WASLO00401 505 aaPredicted RBP18.59■□□□□ 0.57
CD44-203ENST00000278386 CCDC9Q9Y3X0 531 aaKnown RBP18.59■□□□□ 0.57
CD44-203ENST00000278386 ATP7BP35670 1465 aa18.58■□□□□ 0.57
CD44-203ENST00000278386 PHRF1Q9P1Y6 1649 aaKnown RBP18.57■□□□□ 0.56
CD44-203ENST00000278386 NGDNQ8NEJ9 315 aaKnown RBP18.56■□□□□ 0.56
CD44-203ENST00000278386 VPS72Q15906 364 aa18.55■□□□□ 0.56
CD44-203ENST00000278386 PAK3O75914 559 aaPredicted RBP18.54■□□□□ 0.56
CD44-203ENST00000278386 QRICH2Q9H0J4 1663 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms