RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 ASXL1Q8IXJ9 1541 aa14.37□□□□□ -0.11
VPS41-201ENST00000265745 KIF1BO60333 1816 aa14.37□□□□□ -0.11
VPS41-201ENST00000265745 MEX3CQ5U5Q3 659 aaKnown RBP14.37□□□□□ -0.11
VPS41-201ENST00000265745 WAPLQ7Z5K2 1190 aa14.37□□□□□ -0.11
VPS41-201ENST00000265745 C14orf93Q9H972 538 aaKnown RBP14.37□□□□□ -0.11
VPS41-201ENST00000265745 PHLPP1O60346 1717 aa14.37□□□□□ -0.11
VPS41-201ENST00000265745 ABCC11Q96J66 1382 aa14.36□□□□□ -0.11
VPS41-201ENST00000265745 DCAF8L1A6NGE4 600 aa14.36□□□□□ -0.11
VPS41-201ENST00000265745 NUTM2BA6NNL0 878 aaPredicted RBP14.36□□□□□ -0.11
VPS41-201ENST00000265745 NUTM2EB1AL46 878 aaPredicted RBP14.36□□□□□ -0.11
VPS41-201ENST00000265745 HRCP23327 699 aa14.36□□□□□ -0.11
VPS41-201ENST00000265745 NUTM2AQ8IVF1 878 aaPredicted RBP14.36□□□□□ -0.11
VPS41-201ENST00000265745 LRPPRCP42704 1394 aaKnown RBP14.35□□□□□ -0.11
VPS41-201ENST00000265745 LRP6O75581 1613 aa14.35□□□□□ -0.11
VPS41-201ENST00000265745 ZNF772Q68DY9 489 aaPredicted RBP14.35□□□□□ -0.11
VPS41-201ENST00000265745 PIK3C2GO75747 1445 aa14.34□□□□□ -0.11
VPS41-201ENST00000265745 SOS2Q07890 1332 aaPredicted RBP14.34□□□□□ -0.11
VPS41-201ENST00000265745 TECPR2O15040 1411 aa14.33□□□□□ -0.11
VPS41-201ENST00000265745 SLC24A1O60721 1099 aa14.33□□□□□ -0.12
VPS41-201ENST00000265745 CFAP70Q5T0N1 1121 aa14.33□□□□□ -0.12
VPS41-201ENST00000265745 SIRT1Q96EB6 747 aa14.33□□□□□ -0.12
VPS41-201ENST00000265745 ESCO1Q5FWF5 840 aa14.32□□□□□ -0.12
VPS41-201ENST00000265745 PNPLA6Q8IY17 1366 aa14.32□□□□□ -0.12
VPS41-201ENST00000265745 ATF5Q9Y2D1 282 aaPredicted RBP14.31□□□□□ -0.12
VPS41-201ENST00000265745 SETD1AO15047 1707 aaKnown RBP14.31□□□□□ -0.12
VPS41-201ENST00000265745 PLEKHH1Q9ULM0 1364 aa14.31□□□□□ -0.12
VPS41-201ENST00000265745 PPLO60437 1756 aa14.3□□□□□ -0.12
VPS41-201ENST00000265745 YTHDC2Q9H6S0 1430 aaKnown RBP14.3□□□□□ -0.12
VPS41-201ENST00000265745 FOXO3O43524 673 aa14.29□□□□□ -0.12
VPS41-201ENST00000265745 DHX57Q6P158 1386 aaKnown RBP14.29□□□□□ -0.12
VPS41-201ENST00000265745 NRXN1Q9ULB1 1477 aa14.29□□□□□ -0.12
VPS41-201ENST00000265745 NUTM2FA1L443 756 aa14.28□□□□□ -0.12
VPS41-201ENST00000265745 AFF2P51816 1311 aa14.28□□□□□ -0.12
VPS41-201ENST00000265745 NPHP3Q7Z494 1330 aa14.28□□□□□ -0.12
VPS41-201ENST00000265745 NALCNQ8IZF0 1738 aa14.28□□□□□ -0.12
VPS41-201ENST00000265745 RXRBP28702 533 aa14.27□□□□□ -0.13
VPS41-201ENST00000265745 C8orf37Q96NL8 207 aa14.27□□□□□ -0.13
VPS41-201ENST00000265745 MYOM2P54296 1465 aa14.26□□□□□ -0.13
VPS41-201ENST00000265745 ADAMTS2O95450 1211 aa14.26□□□□□ -0.13
VPS41-201ENST00000265745 DCAF11Q8TEB1 546 aa14.26□□□□□ -0.13
VPS41-201ENST00000265745 STAC3Q96MF2 364 aa14.26□□□□□ -0.13
VPS41-201ENST00000265745 KDM2AQ9Y2K7 1162 aa14.26□□□□□ -0.13
VPS41-201ENST00000265745 SHPRHQ149N8 1683 aa14.26□□□□□ -0.13
VPS41-201ENST00000265745 XPCQ01831 940 aaPredicted RBP14.25□□□□□ -0.13
VPS41-201ENST00000265745 NGLY1Q96IV0 654 aa14.25□□□□□ -0.13
VPS41-201ENST00000265745 PRAM1Q96QH2 718 aa14.25□□□□□ -0.13
VPS41-201ENST00000265745 QTRT2Q9H974 415 aaKnown RBP14.25□□□□□ -0.13
VPS41-201ENST00000265745 NHSL1Q5SYE7 1610 aa14.24□□□□□ -0.13
VPS41-201ENST00000265745 CDC42BPGQ6DT37 1551 aa14.23□□□□□ -0.13
VPS41-201ENST00000265745 SAFB2Q14151 953 aaKnown RBP eCLIP14.23□□□□□ -0.13
VPS41-201ENST00000265745 FNBP4Q8N3X1 1017 aaPredicted RBP14.22□□□□□ -0.13
VPS41-201ENST00000265745 POGKQ9P215 609 aa14.22□□□□□ -0.13
VPS41-201ENST00000265745 RBM6P78332 1123 aaKnown RBP14.21□□□□□ -0.13
VPS41-201ENST00000265745 TRAK1Q9UPV9 953 aa14.21□□□□□ -0.13
VPS41-201ENST00000265745 LAMC1P11047 1609 aa14.21□□□□□ -0.13
VPS41-201ENST00000265745 PXDNQ92626 1479 aa14.2□□□□□ -0.14
VPS41-201ENST00000265745 KRT28Q7Z3Y7 464 aa14.2□□□□□ -0.14
VPS41-201ENST00000265745 USP21Q9UK80 565 aa14.2□□□□□ -0.14
VPS41-201ENST00000265745 PHF8Q9UPP1 1060 aa14.2□□□□□ -0.14
VPS41-201ENST00000265745 IFT172Q9UG01 1749 aa14.2□□□□□ -0.14
VPS41-201ENST00000265745 SPATA31A3Q5VYP0 1347 aa14.19□□□□□ -0.14
VPS41-201ENST00000265745 SAMD1Q6SPF0 538 aaPredicted RBP14.19□□□□□ -0.14
VPS41-201ENST00000265745 UPF1Q92900 1129 aaKnown RBP eCLIP14.18□□□□□ -0.14
VPS41-201ENST00000265745 U3KPZ7 1027 aaPredicted RBP14.18□□□□□ -0.14
VPS41-201ENST00000265745 CDK12Q9NYV4 1490 aaPredicted RBP14.18□□□□□ -0.14
VPS41-201ENST00000265745 PSME1Q06323 249 aa14.17□□□□□ -0.14
VPS41-201ENST00000265745 HIRIP3Q9BW71 556 aaPredicted RBP14.17□□□□□ -0.14
VPS41-201ENST00000265745 TRPC5Q9UL62 973 aaPredicted RBP14.17□□□□□ -0.14
VPS41-201ENST00000265745 ADGRB1O14514 1584 aa14.17□□□□□ -0.14
VPS41-201ENST00000265745 MINK1Q8N4C8 1332 aaPredicted RBP14.15□□□□□ -0.14
VPS41-201ENST00000265745 DLC1Q96QB1 1528 aa14.15□□□□□ -0.14
VPS41-201ENST00000265745 WASLO00401 505 aaPredicted RBP14.14□□□□□ -0.15
VPS41-201ENST00000265745 PMFBP1Q8TBY8 1022 aa14.14□□□□□ -0.15
VPS41-201ENST00000265745 KNDC1Q76NI1 1749 aa14.14□□□□□ -0.15
VPS41-201ENST00000265745 BCL9LQ86UU0 1499 aa14.12□□□□□ -0.15
VPS41-201ENST00000265745 SBNO1A3KN83 1393 aa14.12□□□□□ -0.15
VPS41-201ENST00000265745 ANKARQ7Z5J8 1434 aa14.12□□□□□ -0.15
VPS41-201ENST00000265745 PRR36Q9H6K5 1346 aa14.12□□□□□ -0.15
VPS41-201ENST00000265745 RGS12O14924 1447 aa14.11□□□□□ -0.15
VPS41-201ENST00000265745 CABLES1Q8TDN4 633 aa14.11□□□□□ -0.15
VPS41-201ENST00000265745 ATRNO75882 1429 aa14.1□□□□□ -0.15
VPS41-201ENST00000265745 NBPF1Q3BBV0 1214 aa14.1□□□□□ -0.15
VPS41-201ENST00000265745 LMOD2Q6P5Q4 547 aa14.1□□□□□ -0.15
VPS41-201ENST00000265745 GJD4Q96KN9 370 aaPredicted RBP14.1□□□□□ -0.15
VPS41-201ENST00000265745 COL22A1Q8NFW1 1626 aaPredicted RBP14.1□□□□□ -0.15
VPS41-201ENST00000265745 TNS3Q68CZ2 1445 aa14.09□□□□□ -0.15
VPS41-201ENST00000265745 UNC5CLQ8IV45 518 aa14.09□□□□□ -0.15
VPS41-201ENST00000265745 FMN2Q9NZ56 1722 aa14.09□□□□□ -0.15
VPS41-201ENST00000265745 ARHGEF10O15013 1369 aa14.09□□□□□ -0.15
VPS41-201ENST00000265745 EIF3AQ14152 1382 aaKnown RBP14.09□□□□□ -0.15
VPS41-201ENST00000265745 PLEKHG5O94827 1062 aa14.08□□□□□ -0.16
VPS41-201ENST00000265745 HAP1P54257 671 aaPredicted RBP14.08□□□□□ -0.16
VPS41-201ENST00000265745 NUDT16Q96DE0 195 aaKnown RBP14.08□□□□□ -0.16
VPS41-201ENST00000265745 GPRASP1Q5JY77 1395 aa14.08□□□□□ -0.16
VPS41-201ENST00000265745 NGDNQ8NEJ9 315 aaKnown RBP14.07□□□□□ -0.16
VPS41-201ENST00000265745 CDK19Q9BWU1 502 aa14.07□□□□□ -0.16
VPS41-201ENST00000265745 FAM83GA6ND36 823 aa14.06□□□□□ -0.16
VPS41-201ENST00000265745 L3MBTL2Q969R5 705 aa14.06□□□□□ -0.16
VPS41-201ENST00000265745 SLIT2O94813 1529 aa14.05□□□□□ -0.16
VPS41-201ENST00000265745 ADGRB2O60241 1585 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms