RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 CGNL1Q0VF96 1302 aa21.27■■□□□ 1
ZNF541-201ENST00000263351 PDZRN3Q9UPQ7 1066 aa21.27■□□□□ 0.99
ZNF541-201ENST00000263351 PDE3AQ14432 1141 aa21.26■□□□□ 0.99
ZNF541-201ENST00000263351 SHPRHQ149N8 1683 aa21.26■□□□□ 0.99
ZNF541-201ENST00000263351 RTEL1-TNFRSF6BF6WH68 1400 aa21.25■□□□□ 0.99
ZNF541-201ENST00000263351 CABP2Q9NPB3 220 aa21.25■□□□□ 0.99
ZNF541-201ENST00000263351 ADGRL1O94910 1474 aa21.25■□□□□ 0.99
ZNF541-201ENST00000263351 POLR3AO14802 1390 aaPredicted RBP21.24■□□□□ 0.99
ZNF541-201ENST00000263351 RUNDC1Q96C34 613 aa21.24■□□□□ 0.99
ZNF541-201ENST00000263351 U2AF1L5P0DN76 240 aaPredicted RBP21.23■□□□□ 0.99
ZNF541-201ENST00000263351 U2AF1Q01081 240 aaKnown RBP eCLIP21.23■□□□□ 0.99
ZNF541-201ENST00000263351 NLRP1Q9C000 1473 aa21.23■□□□□ 0.99
ZNF541-201ENST00000263351 VWDEQ8N2E2 1590 aa21.22■□□□□ 0.99
ZNF541-201ENST00000263351 PPRC1Q5VV67 1664 aaKnown RBP21.22■□□□□ 0.99
ZNF541-201ENST00000263351 INO80Q9ULG1 1556 aaPredicted RBP21.21■□□□□ 0.99
ZNF541-201ENST00000263351 STK26Q9P289 416 aa21.2■□□□□ 0.98
ZNF541-201ENST00000263351 KIF1BO60333 1816 aa21.19■□□□□ 0.98
ZNF541-201ENST00000263351 FBLN1P23142 703 aa21.19■□□□□ 0.98
ZNF541-201ENST00000263351 MYOM2P54296 1465 aa21.19■□□□□ 0.98
ZNF541-201ENST00000263351 GGNBP2Q9H3C7 697 aa21.18■□□□□ 0.98
ZNF541-201ENST00000263351 U2SURPO15042 1029 aaKnown RBP21.18■□□□□ 0.98
ZNF541-201ENST00000263351 IQSEC2Q5JU85 1478 aa21.17■□□□□ 0.98
ZNF541-201ENST00000263351 KIAA1210Q9ULL0 1709 aa21.17■□□□□ 0.98
ZNF541-201ENST00000263351 STAC3Q96MF2 364 aa21.16■□□□□ 0.98
ZNF541-201ENST00000263351 TBC1D2Q9BYX2 928 aa21.16■□□□□ 0.98
ZNF541-201ENST00000263351 EFCAB6Q5THR3 1501 aa21.16■□□□□ 0.98
ZNF541-201ENST00000263351 PHF23Q9BUL5 403 aaPredicted RBP21.16■□□□□ 0.98
ZNF541-201ENST00000263351 VIRMAQ69YN4 1812 aaKnown RBP21.16■□□□□ 0.98
ZNF541-201ENST00000263351 C14orf93Q9H972 538 aaKnown RBP21.15■□□□□ 0.98
ZNF541-201ENST00000263351 MAPK8IP3Q9UPT6 1336 aa21.15■□□□□ 0.98
ZNF541-201ENST00000263351 IFT172Q9UG01 1749 aa21.15■□□□□ 0.98
ZNF541-201ENST00000263351 UHRF1BP1LA0JNW5 1464 aa21.15■□□□□ 0.98
ZNF541-201ENST00000263351 EXOSC9Q06265 439 aaKnown RBP21.14■□□□□ 0.98
ZNF541-201ENST00000263351 NPATQ14207 1427 aa21.14■□□□□ 0.97
ZNF541-201ENST00000263351 QRICH2Q9H0J4 1663 aa21.14■□□□□ 0.97
ZNF541-201ENST00000263351 ZNF518AQ6AHZ1 1483 aa21.13■□□□□ 0.97
ZNF541-201ENST00000263351 MFAP1P55081 439 aaKnown RBP21.12■□□□□ 0.97
ZNF541-201ENST00000263351 ABCA9Q8IUA7 1624 aa21.12■□□□□ 0.97
ZNF541-201ENST00000263351 KIDINS220Q9ULH0 1771 aa21.12■□□□□ 0.97
ZNF541-201ENST00000263351 ANTXR1Q9H6X2 564 aa21.12■□□□□ 0.97
ZNF541-201ENST00000263351 GZF1Q9H116 711 aaPredicted RBP21.11■□□□□ 0.97
ZNF541-201ENST00000263351 NRXN1Q9ULB1 1477 aa21.11■□□□□ 0.97
ZNF541-201ENST00000263351 FTSJ3Q8IY81 847 aaKnown RBP21.11■□□□□ 0.97
ZNF541-201ENST00000263351 TBC1D32Q96NH3 1257 aa21.11■□□□□ 0.97
ZNF541-201ENST00000263351 SMC4Q9NTJ3 1288 aa21.11■□□□□ 0.97
ZNF541-201ENST00000263351 MVPQ14764 893 aaKnown RBP21.1■□□□□ 0.97
ZNF541-201ENST00000263351 ADGRB1O14514 1584 aa21.1■□□□□ 0.97
ZNF541-201ENST00000263351 TRIM27P14373 513 aa21.1■□□□□ 0.97
ZNF541-201ENST00000263351 PMFBP1Q8TBY8 1022 aa21.1■□□□□ 0.97
ZNF541-201ENST00000263351 SSH1Q8WYL5 1049 aa21.1■□□□□ 0.97
ZNF541-201ENST00000263351 ITPRIPQ8IWB1 547 aa21.09■□□□□ 0.97
ZNF541-201ENST00000263351 WDR63Q8IWG1 891 aa21.09■□□□□ 0.97
ZNF541-201ENST00000263351 ADGRB3O60242 1522 aa21.08■□□□□ 0.97
ZNF541-201ENST00000263351 CD109Q6YHK3 1445 aa21.08■□□□□ 0.96
ZNF541-201ENST00000263351 ASXL2Q76L83 1435 aa21.08■□□□□ 0.96
ZNF541-201ENST00000263351 SBNO2Q9Y2G9 1366 aa21.07■□□□□ 0.96
ZNF541-201ENST00000263351 RAPGEF3O95398 923 aa21.07■□□□□ 0.96
ZNF541-201ENST00000263351 CFAP53Q96M91 514 aa21.07■□□□□ 0.96
ZNF541-201ENST00000263351 MYO3AQ8NEV4 1616 aa21.07■□□□□ 0.96
ZNF541-201ENST00000263351 DZIP1LQ8IYY4 767 aaKnown RBP21.07■□□□□ 0.96
ZNF541-201ENST00000263351 TRIM35Q9UPQ4 493 aa21.07■□□□□ 0.96
ZNF541-201ENST00000263351 TULP4Q9NRJ4 1543 aa21.07■□□□□ 0.96
ZNF541-201ENST00000263351 MINK1Q8N4C8 1332 aaPredicted RBP21.06■□□□□ 0.96
ZNF541-201ENST00000263351 SRPK2P78362 688 aaKnown RBP21.06■□□□□ 0.96
ZNF541-201ENST00000263351 BECN1Q14457 450 aa21.06■□□□□ 0.96
ZNF541-201ENST00000263351 ZKSCAN2Q63HK3 967 aa21.06■□□□□ 0.96
ZNF541-201ENST00000263351 RWDD1Q9H446 243 aaPredicted RBP21.05■□□□□ 0.96
ZNF541-201ENST00000263351 NOB1Q9ULX3 412 aaKnown RBP21.05■□□□□ 0.96
ZNF541-201ENST00000263351 ZC3H13Q5T200 1668 aaKnown RBP21.05■□□□□ 0.96
ZNF541-201ENST00000263351 A0A1W2PP64 1363 aa21.04■□□□□ 0.96
ZNF541-201ENST00000263351 NINLQ9Y2I6 1382 aa21.04■□□□□ 0.96
ZNF541-201ENST00000263351 TMPOP42166 694 aaKnown RBP21.03■□□□□ 0.96
ZNF541-201ENST00000263351 TMEM57Q8N5G2 664 aa21.03■□□□□ 0.96
ZNF541-201ENST00000263351 MYH16Q9H6N6 1097 aa21.03■□□□□ 0.96
ZNF541-201ENST00000263351 NGEFQ8N5V2 710 aa21.03■□□□□ 0.96
ZNF541-201ENST00000263351 THUMPD2Q9BTF0 503 aaKnown RBP21.03■□□□□ 0.96
ZNF541-201ENST00000263351 ARAP3Q8WWN8 1544 aa21.03■□□□□ 0.96
ZNF541-201ENST00000263351 EIF5BO60841 1220 aaKnown RBP21.02■□□□□ 0.96
ZNF541-201ENST00000263351 PLEKHF1Q96S99 279 aa21.02■□□□□ 0.96
ZNF541-201ENST00000263351 PPLO60437 1756 aa21.02■□□□□ 0.96
ZNF541-201ENST00000263351 PRKCSHP14314 528 aaPredicted RBP21.01■□□□□ 0.95
ZNF541-201ENST00000263351 C1orf115Q9H7X2 142 aa21.01■□□□□ 0.95
ZNF541-201ENST00000263351 UPF2Q9HAU5 1272 aaKnown RBP21.01■□□□□ 0.95
ZNF541-201ENST00000263351 EVC2Q86UK5 1308 aa21.01■□□□□ 0.95
ZNF541-201ENST00000263351 PANK2Q9BZ23 570 aa21■□□□□ 0.95
ZNF541-201ENST00000263351 FRMPD1Q5SYB0 1578 aa21■□□□□ 0.95
ZNF541-201ENST00000263351 GLI2P10070 1586 aa21■□□□□ 0.95
ZNF541-201ENST00000263351 C22orf23Q9BZE7 217 aa20.99■□□□□ 0.95
ZNF541-201ENST00000263351 LNPKQ9C0E8 428 aa20.99■□□□□ 0.95
ZNF541-201ENST00000263351 ANKRD36BQ8N2N9 1353 aa20.99■□□□□ 0.95
ZNF541-201ENST00000263351 SLC24A1O60721 1099 aa20.99■□□□□ 0.95
ZNF541-201ENST00000263351 RIPK4P57078 832 aa20.99■□□□□ 0.95
ZNF541-201ENST00000263351 IDI1Q13907 227 aa20.99■□□□□ 0.95
ZNF541-201ENST00000263351 CCDC27Q2M243 656 aa20.99■□□□□ 0.95
ZNF541-201ENST00000263351 SIGLEC1Q9BZZ2 1709 aa20.99■□□□□ 0.95
ZNF541-201ENST00000263351 ELL2O00472 640 aaPredicted RBP20.98■□□□□ 0.95
ZNF541-201ENST00000263351 FYB1O15117 783 aa20.98■□□□□ 0.95
ZNF541-201ENST00000263351 SETBP1Q9Y6X0 1596 aa20.98■□□□□ 0.95
ZNF541-201ENST00000263351 RRAGDQ9NQL2 400 aaPredicted RBP20.97■□□□□ 0.95
ZNF541-201ENST00000263351 CAMSAP1Q5T5Y3 1602 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms