RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 SMC4Q9NTJ3 1288 aa16.13■□□□□ 0.17
LIG1-201ENST00000263274 ABCC2Q92887 1545 aa16.13■□□□□ 0.17
LIG1-201ENST00000263274 GGNBP2Q9H3C7 697 aa16.13■□□□□ 0.17
LIG1-201ENST00000263274 MAPK8IP3Q9UPT6 1336 aa16.13■□□□□ 0.17
LIG1-201ENST00000263274 MFAP1P55081 439 aaKnown RBP16.12■□□□□ 0.17
LIG1-201ENST00000263274 ITPRIPQ8IWB1 547 aa16.12■□□□□ 0.17
LIG1-201ENST00000263274 RWDD1Q9H446 243 aaPredicted RBP16.12■□□□□ 0.17
LIG1-201ENST00000263274 GZF1Q9H116 711 aaPredicted RBP16.12■□□□□ 0.17
LIG1-201ENST00000263274 CFAP65Q6ZU64 1925 aaKnown RBP16.11■□□□□ 0.17
LIG1-201ENST00000263274 NOS1P29475 1434 aa16.11■□□□□ 0.17
LIG1-201ENST00000263274 MYH16Q9H6N6 1097 aa16.1■□□□□ 0.17
LIG1-201ENST00000263274 AEBP2Q6ZN18 517 aaPredicted RBP16.1■□□□□ 0.17
LIG1-201ENST00000263274 POGKQ9P215 609 aa16.1■□□□□ 0.17
LIG1-201ENST00000263274 ASXL2Q76L83 1435 aa16.1■□□□□ 0.17
LIG1-201ENST00000263274 PLPPR3Q6T4P5 718 aa16.09■□□□□ 0.17
LIG1-201ENST00000263274 SHROOM2Q13796 1616 aa16.08■□□□□ 0.17
LIG1-201ENST00000263274 EXOSC9Q06265 439 aaKnown RBP16.08■□□□□ 0.17
LIG1-201ENST00000263274 FANCAO15360 1455 aa16.08■□□□□ 0.16
LIG1-201ENST00000263274 MINK1Q8N4C8 1332 aaPredicted RBP16.07■□□□□ 0.16
LIG1-201ENST00000263274 ZKSCAN2Q63HK3 967 aa16.07■□□□□ 0.16
LIG1-201ENST00000263274 PLXNC1O60486 1568 aa16.07■□□□□ 0.16
LIG1-201ENST00000263274 DZIP1LQ8IYY4 767 aaKnown RBP16.07■□□□□ 0.16
LIG1-201ENST00000263274 NGEFQ8N5V2 710 aa16.07■□□□□ 0.16
LIG1-201ENST00000263274 ERVK-7P63135 1459 aa16.07■□□□□ 0.16
LIG1-201ENST00000263274 MADDQ8WXG6 1647 aa16.06■□□□□ 0.16
LIG1-201ENST00000263274 STAG3Q9UJ98 1225 aa16.06■□□□□ 0.16
LIG1-201ENST00000263274 NPC1L1Q9UHC9 1359 aa16.05■□□□□ 0.16
LIG1-201ENST00000263274 ADGRL1O94910 1474 aa16.05■□□□□ 0.16
LIG1-201ENST00000263274 EVC2Q86UK5 1308 aa16.05■□□□□ 0.16
LIG1-201ENST00000263274 CLTCL1P53675 1640 aa16.05■□□□□ 0.16
LIG1-201ENST00000263274 RAPGEF3O95398 923 aa16.05■□□□□ 0.16
LIG1-201ENST00000263274 ELL2O00472 640 aaPredicted RBP16.04■□□□□ 0.16
LIG1-201ENST00000263274 SYNMO15061 1565 aa16.04■□□□□ 0.16
LIG1-201ENST00000263274 LAMC1P11047 1609 aa16.04■□□□□ 0.16
LIG1-201ENST00000263274 POLR3AO14802 1390 aaPredicted RBP16.04■□□□□ 0.16
LIG1-201ENST00000263274 WDR63Q8IWG1 891 aa16.04■□□□□ 0.16
LIG1-201ENST00000263274 ABCC1P33527 1531 aa16.04■□□□□ 0.16
LIG1-201ENST00000263274 FBLN1P23142 703 aa16.03■□□□□ 0.16
LIG1-201ENST00000263274 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.03■□□□□ 0.16
LIG1-201ENST00000263274 USP19O94966 1318 aa16.03■□□□□ 0.16
LIG1-201ENST00000263274 TRPM2O94759 1503 aa16.03■□□□□ 0.16
LIG1-201ENST00000263274 C14orf93Q9H972 538 aaKnown RBP16.03■□□□□ 0.16
LIG1-201ENST00000263274 PTPRTO14522 1441 aa16.03■□□□□ 0.16
LIG1-201ENST00000263274 RIPK4P57078 832 aa16.02■□□□□ 0.16
LIG1-201ENST00000263274 MVPQ14764 893 aaKnown RBP16.02■□□□□ 0.16
LIG1-201ENST00000263274 TBC1D2Q9BYX2 928 aa16.01■□□□□ 0.15
LIG1-201ENST00000263274 VGFO15240 615 aaPredicted RBP16■□□□□ 0.15
LIG1-201ENST00000263274 SSH1Q8WYL5 1049 aa16■□□□□ 0.15
LIG1-201ENST00000263274 NOB1Q9ULX3 412 aaKnown RBP16■□□□□ 0.15
LIG1-201ENST00000263274 RTEL1-TNFRSF6BF6WH68 1400 aa16■□□□□ 0.15
LIG1-201ENST00000263274 HSP90AA1P07900 732 aaKnown RBP16■□□□□ 0.15
LIG1-201ENST00000263274 LNPKQ9C0E8 428 aa16■□□□□ 0.15
LIG1-201ENST00000263274 KDM5AP29375 1690 aaKnown RBP16■□□□□ 0.15
LIG1-201ENST00000263274 FOXD4L1Q9NU39 408 aa16■□□□□ 0.15
LIG1-201ENST00000263274 ZCCHC11Q5TAX3 1644 aaKnown RBP15.99■□□□□ 0.15
LIG1-201ENST00000263274 C22orf23Q9BZE7 217 aa15.99■□□□□ 0.15
LIG1-201ENST00000263274 TRIM27P14373 513 aa15.98■□□□□ 0.15
LIG1-201ENST00000263274 TMPOP42166 694 aaKnown RBP15.98■□□□□ 0.15
LIG1-201ENST00000263274 ATP7AQ04656 1500 aa15.98■□□□□ 0.15
LIG1-201ENST00000263274 RNF17Q9BXT8 1623 aaKnown RBP15.98■□□□□ 0.15
LIG1-201ENST00000263274 IQGAP1P46940 1657 aa15.97■□□□□ 0.15
LIG1-201ENST00000263274 HMOX1P09601 288 aa15.97■□□□□ 0.15
LIG1-201ENST00000263274 MLECQ14165 292 aa15.97■□□□□ 0.15
LIG1-201ENST00000263274 TMEM57Q8N5G2 664 aa15.96■□□□□ 0.15
LIG1-201ENST00000263274 ZFYVE16Q7Z3T8 1539 aa15.96■□□□□ 0.15
LIG1-201ENST00000263274 TBC1D32Q96NH3 1257 aa15.96■□□□□ 0.15
LIG1-201ENST00000263274 C1orf115Q9H7X2 142 aa15.96■□□□□ 0.15
LIG1-201ENST00000263274 SPHKAPQ2M3C7 1700 aa15.96■□□□□ 0.15
LIG1-201ENST00000263274 CD109Q6YHK3 1445 aa15.96■□□□□ 0.15
LIG1-201ENST00000263274 THUMPD2Q9BTF0 503 aaKnown RBP15.96■□□□□ 0.15
LIG1-201ENST00000263274 NINLQ9Y2I6 1382 aa15.96■□□□□ 0.14
LIG1-201ENST00000263274 PRAM1Q96QH2 718 aa15.95■□□□□ 0.14
LIG1-201ENST00000263274 HSCBQ8IWL3 235 aa15.95■□□□□ 0.14
LIG1-201ENST00000263274 DDX19BQ9UMR2 479 aa15.95■□□□□ 0.14
LIG1-201ENST00000263274 DIAPH1O60610 1272 aaKnown RBP15.95■□□□□ 0.14
LIG1-201ENST00000263274 ATF7IPQ6VMQ6 1270 aa15.95■□□□□ 0.14
LIG1-201ENST00000263274 TERF2IPQ9NYB0 399 aa15.95■□□□□ 0.14
LIG1-201ENST00000263274 IDI1Q13907 227 aa15.94■□□□□ 0.14
LIG1-201ENST00000263274 ANKRD45Q5TZF3 282 aa15.93■□□□□ 0.14
LIG1-201ENST00000263274 GLIPR1L2Q4G1C9 344 aa15.93■□□□□ 0.14
LIG1-201ENST00000263274 HDGFL2Q7Z4V5 671 aaPredicted RBP15.93■□□□□ 0.14
LIG1-201ENST00000263274 CABP1Q9NZU7 370 aa15.92■□□□□ 0.14
LIG1-201ENST00000263274 IPO8O15397 1037 aaKnown RBP15.92■□□□□ 0.14
LIG1-201ENST00000263274 HSP90AB1P08238 724 aaKnown RBP15.91■□□□□ 0.14
LIG1-201ENST00000263274 VSIG10Q8N0Z9 540 aa15.91■□□□□ 0.14
LIG1-201ENST00000263274 RSPH6AQ9H0K4 717 aa15.91■□□□□ 0.14
LIG1-201ENST00000263274 ABCA6Q8N139 1617 aa15.91■□□□□ 0.14
LIG1-201ENST00000263274 APBB1O00213 710 aa15.9■□□□□ 0.14
LIG1-201ENST00000263274 PRKAR2BP31323 418 aa15.9■□□□□ 0.14
LIG1-201ENST00000263274 MAP3K4Q9Y6R4 1608 aa15.9■□□□□ 0.14
LIG1-201ENST00000263274 FYB1O15117 783 aa15.9■□□□□ 0.14
LIG1-201ENST00000263274 AAMPQ13685 434 aa15.9■□□□□ 0.14
LIG1-201ENST00000263274 CEP152O94986 1710 aa15.89■□□□□ 0.13
LIG1-201ENST00000263274 TET3O43151 1660 aa15.89■□□□□ 0.13
LIG1-201ENST00000263274 GOLGA6L3A6NEY3 463 aa15.89■□□□□ 0.13
LIG1-201ENST00000263274 TRIM35Q9UPQ4 493 aa15.89■□□□□ 0.13
LIG1-201ENST00000263274 MYOM1P52179 1685 aa15.89■□□□□ 0.13
LIG1-201ENST00000263274 CCDC27Q2M243 656 aa15.89■□□□□ 0.13
LIG1-201ENST00000263274 UHRF1BP1LA0JNW5 1464 aa15.89■□□□□ 0.13
LIG1-201ENST00000263274 TSPOAP1O95153 1857 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms