RNA–Protein interactions for RNA: ENST00000257181.9

PRPF38A-201, Transcript of pre-mRNA processing factor 38A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRPF38A, Length 5,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-201ENST00000257181 GNL2Q13823 731 aaKnown RBP16.71■□□□□ 0.27
PRPF38A-201ENST00000257181 CFAP70Q5T0N1 1121 aa16.71■□□□□ 0.27
PRPF38A-201ENST00000257181 GTF3C3Q9Y5Q9 886 aa16.71■□□□□ 0.27
PRPF38A-201ENST00000257181 CABP4P57796 275 aa16.7■□□□□ 0.26
PRPF38A-201ENST00000257181 CABP2Q9NPB3 220 aa16.7■□□□□ 0.26
PRPF38A-201ENST00000257181 PPP4R2Q9NY27 417 aa16.7■□□□□ 0.26
PRPF38A-201ENST00000257181 C9orf78Q9NZ63 289 aaPredicted RBP16.7■□□□□ 0.26
PRPF38A-201ENST00000257181 PTMSP20962 102 aa16.7■□□□□ 0.26
PRPF38A-201ENST00000257181 ZFYVE16Q7Z3T8 1539 aa16.7■□□□□ 0.26
PRPF38A-201ENST00000257181 GPATCH8Q9UKJ3 1502 aaKnown RBP16.7■□□□□ 0.26
PRPF38A-201ENST00000257181 CWC22Q9HCG8 908 aaKnown RBP16.69■□□□□ 0.26
PRPF38A-201ENST00000257181 RPRD2Q5VT52 1461 aaKnown RBP16.69■□□□□ 0.26
PRPF38A-201ENST00000257181 NRDCO43847 1150 aa16.69■□□□□ 0.26
PRPF38A-201ENST00000257181 WDHD1O75717 1129 aaPredicted RBP16.69■□□□□ 0.26
PRPF38A-201ENST00000257181 CDCA7Q9BWT1 371 aaPredicted RBP16.68■□□□□ 0.26
PRPF38A-201ENST00000257181 NSD2O96028 1365 aa16.68■□□□□ 0.26
PRPF38A-201ENST00000257181 DNAJC5Q9H3Z4 198 aa16.68■□□□□ 0.26
PRPF38A-201ENST00000257181 TSPYL4Q9UJ04 414 aa16.68■□□□□ 0.26
PRPF38A-201ENST00000257181 KIF16BQ96L93 1317 aa16.67■□□□□ 0.26
PRPF38A-201ENST00000257181 KLHL34Q8N239 644 aa16.67■□□□□ 0.26
PRPF38A-201ENST00000257181 TEX13AQ9BXU3 409 aaPredicted RBP16.67■□□□□ 0.26
PRPF38A-201ENST00000257181 A0A087WZG4 1122 aa16.67■□□□□ 0.26
PRPF38A-201ENST00000257181 CCDC30Q5VVM6 783 aa16.67■□□□□ 0.26
PRPF38A-201ENST00000257181 NUDT16Q96DE0 195 aaKnown RBP16.67■□□□□ 0.26
PRPF38A-201ENST00000257181 NUP153P49790 1475 aaKnown RBP16.67■□□□□ 0.26
PRPF38A-201ENST00000257181 TTC21AQ8NDW8 1320 aa16.66■□□□□ 0.26
PRPF38A-201ENST00000257181 TMEM132EQ6IEE7 984 aa16.66■□□□□ 0.26
PRPF38A-201ENST00000257181 GNL3LQ9NVN8 582 aaKnown RBP16.66■□□□□ 0.26
PRPF38A-201ENST00000257181 NAP1L2Q9ULW6 460 aaPredicted RBP16.66■□□□□ 0.26
PRPF38A-201ENST00000257181 LMTK3Q96Q04 1460 aa16.66■□□□□ 0.26
PRPF38A-201ENST00000257181 MIER1Q8N108 512 aa16.65■□□□□ 0.26
PRPF38A-201ENST00000257181 RUFY2Q8WXA3 655 aa16.65■□□□□ 0.26
PRPF38A-201ENST00000257181 STARD3NLO95772 234 aa16.65■□□□□ 0.26
PRPF38A-201ENST00000257181 SLC4A10Q6U841 1118 aa16.65■□□□□ 0.26
PRPF38A-201ENST00000257181 LRRC59Q96AG4 307 aaKnown RBP16.64■□□□□ 0.25
PRPF38A-201ENST00000257181 RIMS2Q9UQ26 1411 aa16.64■□□□□ 0.25
PRPF38A-201ENST00000257181 MFAP1P55081 439 aaKnown RBP16.64■□□□□ 0.25
PRPF38A-201ENST00000257181 NBPF8Q3BBV2 869 aa16.64■□□□□ 0.25
PRPF38A-201ENST00000257181 NBPF14Q5TI25 921 aa16.64■□□□□ 0.25
PRPF38A-201ENST00000257181 ZKSCAN2Q63HK3 967 aa16.63■□□□□ 0.25
PRPF38A-201ENST00000257181 RIC3Q7Z5B4 369 aa16.63■□□□□ 0.25
PRPF38A-201ENST00000257181 RCAN3Q9UKA8 241 aa16.63■□□□□ 0.25
PRPF38A-201ENST00000257181 L1TD1Q5T7N2 865 aaKnown RBP16.63■□□□□ 0.25
PRPF38A-201ENST00000257181 RIPK4P57078 832 aa16.63■□□□□ 0.25
PRPF38A-201ENST00000257181 C19orf44Q9H6X5 657 aa16.63■□□□□ 0.25
PRPF38A-201ENST00000257181 GOLGA6L4A6NEF3 574 aa16.62■□□□□ 0.25
PRPF38A-201ENST00000257181 SYNE3Q6ZMZ3 975 aa16.62■□□□□ 0.25
PRPF38A-201ENST00000257181 MAPKBP1O60336 1514 aa16.62■□□□□ 0.25
PRPF38A-201ENST00000257181 G3BP1Q13283 466 aaKnown RBP eCLIP16.62■□□□□ 0.25
PRPF38A-201ENST00000257181 CT47B1P0C2W7 299 aaPredicted RBP16.61■□□□□ 0.25
PRPF38A-201ENST00000257181 PUS7Q96PZ0 661 aaKnown RBP16.61■□□□□ 0.25
PRPF38A-201ENST00000257181 PPP1R1BQ9UD71 204 aaPredicted RBP16.61■□□□□ 0.25
PRPF38A-201ENST00000257181 HSP90AB3PQ58FF7 597 aa16.61■□□□□ 0.25
PRPF38A-201ENST00000257181 TTC21BQ7Z4L5 1316 aa16.61■□□□□ 0.25
PRPF38A-201ENST00000257181 KRT28Q7Z3Y7 464 aa16.61■□□□□ 0.25
PRPF38A-201ENST00000257181 WASLO00401 505 aaPredicted RBP16.61■□□□□ 0.25
PRPF38A-201ENST00000257181 SMARCC1Q92922 1105 aaPredicted RBP16.6■□□□□ 0.25
PRPF38A-201ENST00000257181 RBM42Q9BTD8 480 aaKnown RBP16.6■□□□□ 0.25
PRPF38A-201ENST00000257181 ZMYM3Q14202 1370 aa16.6■□□□□ 0.25
PRPF38A-201ENST00000257181 EXOC5O00471 708 aa16.6■□□□□ 0.25
PRPF38A-201ENST00000257181 CSPP1Q1MSJ5 1256 aa16.6■□□□□ 0.25
PRPF38A-201ENST00000257181 TBX22Q9Y458 520 aa16.6■□□□□ 0.25
PRPF38A-201ENST00000257181 TRPM2O94759 1503 aa16.6■□□□□ 0.25
PRPF38A-201ENST00000257181 HSCBQ8IWL3 235 aa16.59■□□□□ 0.25
PRPF38A-201ENST00000257181 CPLX2Q6PUV4 134 aaKnown RBP16.59■□□□□ 0.25
PRPF38A-201ENST00000257181 BRD4O60885 1362 aaPredicted RBP16.59■□□□□ 0.25
PRPF38A-201ENST00000257181 CABP1Q9NZU7 370 aa16.58■□□□□ 0.25
PRPF38A-201ENST00000257181 SYCP2Q9BX26 1530 aa16.58■□□□□ 0.25
PRPF38A-201ENST00000257181 IDI1Q13907 227 aa16.58■□□□□ 0.24
PRPF38A-201ENST00000257181 DDX19BQ9UMR2 479 aa16.58■□□□□ 0.24
PRPF38A-201ENST00000257181 TARBP1Q13395 1621 aaKnown RBP16.58■□□□□ 0.24
PRPF38A-201ENST00000257181 ZNF530Q6P9A1 599 aaPredicted RBP16.58■□□□□ 0.24
PRPF38A-201ENST00000257181 ERC1Q8IUD2 1116 aa16.58■□□□□ 0.24
PRPF38A-201ENST00000257181 EIF2S2P20042 333 aaKnown RBP16.57■□□□□ 0.24
PRPF38A-201ENST00000257181 ERC2O15083 957 aa16.57■□□□□ 0.24
PRPF38A-201ENST00000257181 ZNF428Q96B54 188 aa16.57■□□□□ 0.24
PRPF38A-201ENST00000257181 SLC3A2P08195 630 aaKnown RBP16.56■□□□□ 0.24
PRPF38A-201ENST00000257181 MTHFSP49914 203 aa16.56■□□□□ 0.24
PRPF38A-201ENST00000257181 TMOD3Q9NYL9 352 aa16.56■□□□□ 0.24
PRPF38A-201ENST00000257181 C14orf93Q9H972 538 aaKnown RBP16.56■□□□□ 0.24
PRPF38A-201ENST00000257181 GNAI3P08754 354 aa16.56■□□□□ 0.24
PRPF38A-201ENST00000257181 GGNBP2Q9H3C7 697 aa16.56■□□□□ 0.24
PRPF38A-201ENST00000257181 AKAP17AQ02040 695 aaKnown RBP16.56■□□□□ 0.24
PRPF38A-201ENST00000257181 NAIPQ13075 1403 aa16.55■□□□□ 0.24
PRPF38A-201ENST00000257181 SCAF11Q99590 1463 aaKnown RBP16.55■□□□□ 0.24
PRPF38A-201ENST00000257181 TCEAL9Q9UHQ7 104 aa16.54■□□□□ 0.24
PRPF38A-201ENST00000257181 ZPR1O75312 459 aa16.54■□□□□ 0.24
PRPF38A-201ENST00000257181 KCNA6P17658 529 aa16.54■□□□□ 0.24
PRPF38A-201ENST00000257181 CEBPAP49715 358 aaPredicted RBP16.54■□□□□ 0.24
PRPF38A-201ENST00000257181 ATP7AQ04656 1500 aa16.54■□□□□ 0.24
PRPF38A-201ENST00000257181 IFIT2P09913 472 aaKnown RBP16.54■□□□□ 0.24
PRPF38A-201ENST00000257181 FKBP5Q13451 457 aaPredicted RBP16.54■□□□□ 0.24
PRPF38A-201ENST00000257181 TCOF1Q13428 1488 aaKnown RBP16.53■□□□□ 0.24
PRPF38A-201ENST00000257181 NUTM2GQ5VZR2 741 aa16.53■□□□□ 0.24
PRPF38A-201ENST00000257181 EIF2AK4Q9P2K8 1649 aaKnown RBP16.53■□□□□ 0.24
PRPF38A-201ENST00000257181 TBC1D2BQ9UPU7 963 aa16.53■□□□□ 0.24
PRPF38A-201ENST00000257181 CHAF1AQ13111 956 aaPredicted RBP16.52■□□□□ 0.23
PRPF38A-201ENST00000257181 USP35Q9P2H5 1018 aa16.52■□□□□ 0.23
PRPF38A-201ENST00000257181 FBXW7Q969H0 707 aa16.51■□□□□ 0.23
PRPF38A-201ENST00000257181 FCHSD2O94868 740 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms