RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 ESCO1Q5FWF5 840 aa22.72■■□□□ 1.23
SMARCC1-201ENST00000254480 IGF1RP08069 1367 aa22.72■■□□□ 1.23
SMARCC1-201ENST00000254480 MYOM3Q5VTT5 1437 aa22.72■■□□□ 1.23
SMARCC1-201ENST00000254480 TPM2P07951 284 aa22.72■■□□□ 1.23
SMARCC1-201ENST00000254480 AEBP2Q6ZN18 517 aaPredicted RBP22.72■■□□□ 1.23
SMARCC1-201ENST00000254480 PHF23Q9BUL5 403 aaPredicted RBP22.72■■□□□ 1.23
SMARCC1-201ENST00000254480 UBTFL1P0CB47 393 aaPredicted RBP22.71■■□□□ 1.23
SMARCC1-201ENST00000254480 ERICH2A1L162 156 aa22.71■■□□□ 1.23
SMARCC1-201ENST00000254480 RNF20Q5VTR2 975 aa22.71■■□□□ 1.23
SMARCC1-201ENST00000254480 STRN4Q9NRL3 753 aa22.71■■□□□ 1.23
SMARCC1-201ENST00000254480 INTS3Q68E01 1043 aaKnown RBP22.71■■□□□ 1.23
SMARCC1-201ENST00000254480 TPM1P09493 284 aa22.7■■□□□ 1.22
SMARCC1-201ENST00000254480 FGD6Q6ZV73 1430 aa22.69■■□□□ 1.22
SMARCC1-201ENST00000254480 SKOR2Q2VWA4 1001 aaPredicted RBP22.69■■□□□ 1.22
SMARCC1-201ENST00000254480 RBM42Q9BTD8 480 aaKnown RBP22.69■■□□□ 1.22
SMARCC1-201ENST00000254480 C22orf23Q9BZE7 217 aa22.69■■□□□ 1.22
SMARCC1-201ENST00000254480 TXNDC2Q86VQ3 553 aa22.68■■□□□ 1.22
SMARCC1-201ENST00000254480 DNAJC2Q99543 621 aaKnown RBP22.68■■□□□ 1.22
SMARCC1-201ENST00000254480 TCP11L2Q8N4U5 519 aa22.68■■□□□ 1.22
SMARCC1-201ENST00000254480 NBPF1Q3BBV0 1214 aa22.67■■□□□ 1.22
SMARCC1-201ENST00000254480 PATL2C9JE40 543 aaKnown RBP22.67■■□□□ 1.22
SMARCC1-201ENST00000254480 STK11IPQ8N1F8 1099 aa22.67■■□□□ 1.22
SMARCC1-201ENST00000254480 ROCK1Q13464 1354 aa22.67■■□□□ 1.22
SMARCC1-201ENST00000254480 PRKAR2BP31323 418 aa22.66■■□□□ 1.22
SMARCC1-201ENST00000254480 TSR2Q969E8 191 aaKnown RBP22.66■■□□□ 1.22
SMARCC1-201ENST00000254480 WASHC2AQ641Q2 1341 aa22.66■■□□□ 1.22
SMARCC1-201ENST00000254480 RALYLQ86SE5 291 aaKnown RBP22.65■■□□□ 1.22
SMARCC1-201ENST00000254480 PRAM1Q96QH2 718 aa22.65■■□□□ 1.22
SMARCC1-201ENST00000254480 ERC2O15083 957 aa22.65■■□□□ 1.22
SMARCC1-201ENST00000254480 HOMER1Q86YM7 354 aa22.65■■□□□ 1.22
SMARCC1-201ENST00000254480 ANKRD50Q9ULJ7 1429 aa22.65■■□□□ 1.22
SMARCC1-201ENST00000254480 CHMP5Q9NZZ3 219 aa22.65■■□□□ 1.22
SMARCC1-201ENST00000254480 SURF6O75683 361 aaKnown RBP22.64■■□□□ 1.22
SMARCC1-201ENST00000254480 FSD1Q9BTV5 496 aa22.64■■□□□ 1.21
SMARCC1-201ENST00000254480 ATP2B1P20020 1258 aa22.64■■□□□ 1.21
SMARCC1-201ENST00000254480 EXOSC9Q06265 439 aaKnown RBP22.64■■□□□ 1.21
SMARCC1-201ENST00000254480 CHMP4CQ96CF2 233 aa22.63■■□□□ 1.21
SMARCC1-201ENST00000254480 CWC22Q9HCG8 908 aaKnown RBP22.62■■□□□ 1.21
SMARCC1-201ENST00000254480 CCDC43Q96MW1 224 aaKnown RBP22.62■■□□□ 1.21
SMARCC1-201ENST00000254480 HSP90AA2PQ14568 343 aaPredicted RBP22.62■■□□□ 1.21
SMARCC1-201ENST00000254480 SLC12A5Q9H2X9 1139 aa22.61■■□□□ 1.21
SMARCC1-201ENST00000254480 SASS6Q6UVJ0 657 aa22.61■■□□□ 1.21
SMARCC1-201ENST00000254480 ARHGAP5Q13017 1502 aa22.61■■□□□ 1.21
SMARCC1-201ENST00000254480 RNF214Q8ND24 703 aa22.61■■□□□ 1.21
SMARCC1-201ENST00000254480 CCDC47Q96A33 483 aaKnown RBP22.6■■□□□ 1.21
SMARCC1-201ENST00000254480 MAP4K4O95819 1239 aaPredicted RBP22.59■■□□□ 1.21
SMARCC1-201ENST00000254480 MIA2Q96PC5 1412 aa22.59■■□□□ 1.21
SMARCC1-201ENST00000254480 IKQ13123 557 aaPredicted RBP22.59■■□□□ 1.21
SMARCC1-201ENST00000254480 HSP90AB4PQ58FF6 505 aa22.59■■□□□ 1.21
SMARCC1-201ENST00000254480 CNTLNQ9NXG0 1405 aa22.59■■□□□ 1.21
SMARCC1-201ENST00000254480 PPP2R1AP30153 589 aa22.59■■□□□ 1.21
SMARCC1-201ENST00000254480 RRP12Q5JTH9 1297 aaKnown RBP22.59■■□□□ 1.21
SMARCC1-201ENST00000254480 PPP1R1BQ9UD71 204 aaPredicted RBP22.59■■□□□ 1.21
SMARCC1-201ENST00000254480 IPO7O95373 1038 aaKnown RBP22.58■■□□□ 1.21
SMARCC1-201ENST00000254480 NAP1L1P55209 391 aaKnown RBP22.58■■□□□ 1.21
SMARCC1-201ENST00000254480 NUTM2BA6NNL0 878 aaPredicted RBP22.58■■□□□ 1.21
SMARCC1-201ENST00000254480 NUTM2EB1AL46 878 aaPredicted RBP22.58■■□□□ 1.21
SMARCC1-201ENST00000254480 NUTM2AQ8IVF1 878 aaPredicted RBP22.58■■□□□ 1.21
SMARCC1-201ENST00000254480 SIL1Q9H173 461 aa22.58■■□□□ 1.21
SMARCC1-201ENST00000254480 PROSER2Q86WR7 435 aaPredicted RBP22.58■■□□□ 1.2
SMARCC1-201ENST00000254480 BCAR3O75815 825 aa22.57■■□□□ 1.2
SMARCC1-201ENST00000254480 SAFBQ15424 915 aaKnown RBP eCLIP22.57■■□□□ 1.2
SMARCC1-201ENST00000254480 CDC45O75419 566 aa22.57■■□□□ 1.2
SMARCC1-201ENST00000254480 ANKRD20A12PQ8NF67 263 aa22.57■■□□□ 1.2
SMARCC1-201ENST00000254480 DDX54Q8TDD1 881 aaKnown RBP22.57■■□□□ 1.2
SMARCC1-201ENST00000254480 CCDC73Q6ZRK6 1079 aa22.56■■□□□ 1.2
SMARCC1-201ENST00000254480 NOB1Q9ULX3 412 aaKnown RBP22.56■■□□□ 1.2
SMARCC1-201ENST00000254480 XPCQ01831 940 aaPredicted RBP22.56■■□□□ 1.2
SMARCC1-201ENST00000254480 CEBPZQ03701 1054 aaKnown RBP22.56■■□□□ 1.2
SMARCC1-201ENST00000254480 CNKSR2Q8WXI2 1034 aa22.55■■□□□ 1.2
SMARCC1-201ENST00000254480 FAM13BQ9NYF5 915 aa22.55■■□□□ 1.2
SMARCC1-201ENST00000254480 TWISTNBQ3B726 338 aaPredicted RBP22.55■■□□□ 1.2
SMARCC1-201ENST00000254480 SULT6B1Q6IMI4 303 aa22.55■■□□□ 1.2
SMARCC1-201ENST00000254480 CCDC30Q5VVM6 783 aa22.55■■□□□ 1.2
SMARCC1-201ENST00000254480 NCOA2Q15596 1464 aa22.55■■□□□ 1.2
SMARCC1-201ENST00000254480 TTLL5Q6EMB2 1281 aa22.54■■□□□ 1.2
SMARCC1-201ENST00000254480 CNTROBQ8N137 903 aa22.54■■□□□ 1.2
SMARCC1-201ENST00000254480 CABP1Q9NZU7 370 aa22.54■■□□□ 1.2
SMARCC1-201ENST00000254480 CLASRPQ8N2M8 674 aaKnown RBP22.54■■□□□ 1.2
SMARCC1-201ENST00000254480 MYL6BP14649 208 aa22.54■■□□□ 1.2
SMARCC1-201ENST00000254480 HOOK1Q9UJC3 728 aaKnown RBP22.53■■□□□ 1.2
SMARCC1-201ENST00000254480 IFT57Q9NWB7 429 aa22.53■■□□□ 1.2
SMARCC1-201ENST00000254480 LRRC9Q6ZRR7 1453 aa22.53■■□□□ 1.2
SMARCC1-201ENST00000254480 PDILTQ8N807 584 aa22.53■■□□□ 1.2
SMARCC1-201ENST00000254480 SLC4A2P04920 1241 aa22.53■■□□□ 1.2
SMARCC1-201ENST00000254480 PDZRN3Q9UPQ7 1066 aa22.53■■□□□ 1.2
SMARCC1-201ENST00000254480 GPRASP1Q5JY77 1395 aa22.53■■□□□ 1.2
SMARCC1-201ENST00000254480 CDK19Q9BWU1 502 aa22.52■■□□□ 1.2
SMARCC1-201ENST00000254480 CCDC70Q6NSX1 233 aa22.52■■□□□ 1.2
SMARCC1-201ENST00000254480 NEK4P51957 841 aa22.51■■□□□ 1.19
SMARCC1-201ENST00000254480 NUCB2P80303 420 aa22.51■■□□□ 1.19
SMARCC1-201ENST00000254480 KIF21BO75037 1637 aa22.51■■□□□ 1.19
SMARCC1-201ENST00000254480 NFKBIBQ15653 356 aa22.51■■□□□ 1.19
SMARCC1-201ENST00000254480 SLC26A8Q96RN1 970 aa22.51■■□□□ 1.19
SMARCC1-201ENST00000254480 STK3Q13188 491 aa22.5■■□□□ 1.19
SMARCC1-201ENST00000254480 KIF6Q6ZMV9 814 aa22.5■■□□□ 1.19
SMARCC1-201ENST00000254480 FMNL2Q96PY5 1086 aa22.5■■□□□ 1.19
SMARCC1-201ENST00000254480 SDF4Q9BRK5 362 aa22.5■■□□□ 1.19
SMARCC1-201ENST00000254480 RRS1Q15050 365 aaKnown RBP22.49■■□□□ 1.19
SMARCC1-201ENST00000254480 CNNM1Q9NRU3 951 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms