RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PPLO60437 1756 aa24.24■■□□□ 1.47
CPSF3-201ENST00000238112 POGZQ7Z3K3 1410 aa24.23■■□□□ 1.47
CPSF3-201ENST00000238112 RUNDC1Q96C34 613 aa24.23■■□□□ 1.47
CPSF3-201ENST00000238112 ADGRB1O14514 1584 aa24.23■■□□□ 1.47
CPSF3-201ENST00000238112 TMEM132EQ6IEE7 984 aa24.22■■□□□ 1.47
CPSF3-201ENST00000238112 ZC3H13Q5T200 1668 aaKnown RBP24.22■■□□□ 1.47
CPSF3-201ENST00000238112 CFAP74Q9C0B2 1584 aa24.21■■□□□ 1.47
CPSF3-201ENST00000238112 MLH3Q9UHC1 1453 aa24.21■■□□□ 1.47
CPSF3-201ENST00000238112 CD109Q6YHK3 1445 aa24.2■■□□□ 1.47
CPSF3-201ENST00000238112 FRMPD1Q5SYB0 1578 aa24.2■■□□□ 1.47
CPSF3-201ENST00000238112 NEUROD2Q15784 382 aa24.2■■□□□ 1.46
CPSF3-201ENST00000238112 SHPRHQ149N8 1683 aa24.19■■□□□ 1.46
CPSF3-201ENST00000238112 CFAP53Q96M91 514 aa24.18■■□□□ 1.46
CPSF3-201ENST00000238112 HECW2Q9P2P5 1572 aa24.18■■□□□ 1.46
CPSF3-201ENST00000238112 RRP7AQ9Y3A4 280 aaKnown RBP24.17■■□□□ 1.46
CPSF3-201ENST00000238112 CFAP65Q6ZU64 1925 aaKnown RBP24.17■■□□□ 1.46
CPSF3-201ENST00000238112 TCP11L2Q8N4U5 519 aa24.17■■□□□ 1.46
CPSF3-201ENST00000238112 CLUAP1Q96AJ1 413 aa24.17■■□□□ 1.46
CPSF3-201ENST00000238112 USP32Q8NFA0 1604 aa24.16■■□□□ 1.46
CPSF3-201ENST00000238112 ABCC3O15438 1527 aa24.16■■□□□ 1.46
CPSF3-201ENST00000238112 IGHDP01880 384 aa24.16■■□□□ 1.46
CPSF3-201ENST00000238112 EVC2Q86UK5 1308 aa24.15■■□□□ 1.46
CPSF3-201ENST00000238112 MTHFSP49914 203 aa24.15■■□□□ 1.46
CPSF3-201ENST00000238112 PANK1Q8TE04 598 aa24.15■■□□□ 1.46
CPSF3-201ENST00000238112 COG6Q9Y2V7 657 aa24.15■■□□□ 1.46
CPSF3-201ENST00000238112 IQSEC2Q5JU85 1478 aa24.15■■□□□ 1.46
CPSF3-201ENST00000238112 FRAT1Q92837 279 aaPredicted RBP24.15■■□□□ 1.46
CPSF3-201ENST00000238112 SLC4A3P48751 1232 aa24.13■■□□□ 1.45
CPSF3-201ENST00000238112 WDR63Q8IWG1 891 aa24.13■■□□□ 1.45
CPSF3-201ENST00000238112 PUS7Q96PZ0 661 aaKnown RBP24.13■■□□□ 1.45
CPSF3-201ENST00000238112 VGFO15240 615 aaPredicted RBP24.12■■□□□ 1.45
CPSF3-201ENST00000238112 GLI2P10070 1586 aa24.12■■□□□ 1.45
CPSF3-201ENST00000238112 RARSP54136 660 aaKnown RBP24.12■■□□□ 1.45
CPSF3-201ENST00000238112 PHF23Q9BUL5 403 aaPredicted RBP24.12■■□□□ 1.45
CPSF3-201ENST00000238112 ANKRD36BQ8N2N9 1353 aa24.11■■□□□ 1.45
CPSF3-201ENST00000238112 NSD2O96028 1365 aa24.1■■□□□ 1.45
CPSF3-201ENST00000238112 MAPK8IP3Q9UPT6 1336 aa24.1■■□□□ 1.45
CPSF3-201ENST00000238112 CCDC27Q2M243 656 aa24.1■■□□□ 1.45
CPSF3-201ENST00000238112 NUTM2DQ5VT03 806 aaPredicted RBP24.1■■□□□ 1.45
CPSF3-201ENST00000238112 CAMSAP1Q5T5Y3 1602 aa24.09■■□□□ 1.45
CPSF3-201ENST00000238112 AAMPQ13685 434 aa24.08■■□□□ 1.45
CPSF3-201ENST00000238112 TULP4Q9NRJ4 1543 aa24.07■■□□□ 1.44
CPSF3-201ENST00000238112 PMFBP1Q8TBY8 1022 aa24.06■■□□□ 1.44
CPSF3-201ENST00000238112 MYH16Q9H6N6 1097 aa24.06■■□□□ 1.44
CPSF3-201ENST00000238112 U2AF1L5P0DN76 240 aaPredicted RBP24.05■■□□□ 1.44
CPSF3-201ENST00000238112 U2AF1Q01081 240 aaKnown RBP eCLIP24.05■■□□□ 1.44
CPSF3-201ENST00000238112 NFKBIBQ15653 356 aa24.05■■□□□ 1.44
CPSF3-201ENST00000238112 ARHGEF28Q8N1W1 1705 aaKnown RBP24.05■■□□□ 1.44
CPSF3-201ENST00000238112 NEXMIFQ5QGS0 1516 aa24.05■■□□□ 1.44
CPSF3-201ENST00000238112 CABP2Q9NPB3 220 aa24.05■■□□□ 1.44
CPSF3-201ENST00000238112 NCBP3Q53F19 620 aaKnown RBP24.04■■□□□ 1.44
CPSF3-201ENST00000238112 PIK3C2BO00750 1634 aa24.04■■□□□ 1.44
CPSF3-201ENST00000238112 SIGLEC1Q9BZZ2 1709 aa24.03■■□□□ 1.44
CPSF3-201ENST00000238112 RAPGEF3O95398 923 aa24.02■■□□□ 1.44
CPSF3-201ENST00000238112 BCL2L13Q9BXK5 485 aa24.02■■□□□ 1.44
CPSF3-201ENST00000238112 SAFB2Q14151 953 aaKnown RBP eCLIP24.01■■□□□ 1.43
CPSF3-201ENST00000238112 NEO1Q92859 1461 aa24■■□□□ 1.43
CPSF3-201ENST00000238112 RLBP1P12271 317 aa24■■□□□ 1.43
CPSF3-201ENST00000238112 OSCARQ8IYS5 282 aa23.99■■□□□ 1.43
CPSF3-201ENST00000238112 VIRMAQ69YN4 1812 aaKnown RBP23.99■■□□□ 1.43
CPSF3-201ENST00000238112 ARHGAP31Q2M1Z3 1444 aa23.98■■□□□ 1.43
CPSF3-201ENST00000238112 SRPK2P78362 688 aaKnown RBP23.98■■□□□ 1.43
CPSF3-201ENST00000238112 IDI1Q13907 227 aa23.98■■□□□ 1.43
CPSF3-201ENST00000238112 TNNQ9UQP3 1299 aa23.98■■□□□ 1.43
CPSF3-201ENST00000238112 PCDHB15Q9Y5E8 787 aa23.97■■□□□ 1.43
CPSF3-201ENST00000238112 A0A1W2PP64 1363 aa23.97■■□□□ 1.43
CPSF3-201ENST00000238112 ABCC11Q96J66 1382 aa23.97■■□□□ 1.43
CPSF3-201ENST00000238112 STK26Q9P289 416 aa23.96■■□□□ 1.43
CPSF3-201ENST00000238112 DIP2CQ9Y2E4 1556 aa23.96■■□□□ 1.43
CPSF3-201ENST00000238112 SLC52A1Q9NWF4 448 aa23.96■■□□□ 1.43
CPSF3-201ENST00000238112 ADGRB2O60241 1585 aa23.95■■□□□ 1.43
CPSF3-201ENST00000238112 ZFYVE9O95405 1425 aa23.95■■□□□ 1.43
CPSF3-201ENST00000238112 RWDD1Q9H446 243 aaPredicted RBP23.95■■□□□ 1.42
CPSF3-201ENST00000238112 USP19O94966 1318 aa23.95■■□□□ 1.42
CPSF3-201ENST00000238112 GSE1Q14687 1217 aa23.94■■□□□ 1.42
CPSF3-201ENST00000238112 U2SURPO15042 1029 aaKnown RBP23.94■■□□□ 1.42
CPSF3-201ENST00000238112 CT47B1P0C2W7 299 aaPredicted RBP23.94■■□□□ 1.42
CPSF3-201ENST00000238112 ZKSCAN2Q63HK3 967 aa23.93■■□□□ 1.42
CPSF3-201ENST00000238112 FTSJ3Q8IY81 847 aaKnown RBP23.93■■□□□ 1.42
CPSF3-201ENST00000238112 SEC24BO95487 1268 aa23.92■■□□□ 1.42
CPSF3-201ENST00000238112 MVPQ14764 893 aaKnown RBP23.92■■□□□ 1.42
CPSF3-201ENST00000238112 GGNBP2Q9H3C7 697 aa23.92■■□□□ 1.42
CPSF3-201ENST00000238112 ZMYM3Q14202 1370 aa23.92■■□□□ 1.42
CPSF3-201ENST00000238112 SENP3Q9H4L4 574 aaPredicted RBP23.92■■□□□ 1.42
CPSF3-201ENST00000238112 ATAD2Q6PL18 1390 aa23.92■■□□□ 1.42
CPSF3-201ENST00000238112 TERF2IPQ9NYB0 399 aa23.91■■□□□ 1.42
CPSF3-201ENST00000238112 PDZRN3Q9UPQ7 1066 aa23.91■■□□□ 1.42
CPSF3-201ENST00000238112 BECN1Q14457 450 aa23.9■■□□□ 1.42
CPSF3-201ENST00000238112 DZIP1LQ8IYY4 767 aaKnown RBP23.89■■□□□ 1.42
CPSF3-201ENST00000238112 TSR2Q969E8 191 aaKnown RBP23.89■■□□□ 1.42
CPSF3-201ENST00000238112 UPF2Q9HAU5 1272 aaKnown RBP23.89■■□□□ 1.42
CPSF3-201ENST00000238112 PLEKHF1Q96S99 279 aa23.89■■□□□ 1.41
CPSF3-201ENST00000238112 TMPOP42166 694 aaKnown RBP23.88■■□□□ 1.41
CPSF3-201ENST00000238112 POGKQ9P215 609 aa23.88■■□□□ 1.41
CPSF3-201ENST00000238112 MINK1Q8N4C8 1332 aaPredicted RBP23.88■■□□□ 1.41
CPSF3-201ENST00000238112 SMC4Q9NTJ3 1288 aa23.88■■□□□ 1.41
CPSF3-201ENST00000238112 PRAM1Q96QH2 718 aa23.87■■□□□ 1.41
CPSF3-201ENST00000238112 PTPRMP28827 1452 aa23.86■■□□□ 1.41
CPSF3-201ENST00000238112 FRAT2O75474 233 aaPredicted RBP23.85■■□□□ 1.41
CPSF3-201ENST00000238112 EXOSC9Q06265 439 aaKnown RBP23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms