RNA–Protein interactions for RNA: ENST00000216774.10

SRP54-201, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRP54, Length 2,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-201ENST00000216774 RUNDC1Q96C34 613 aa17.21■□□□□ 0.35
SRP54-201ENST00000216774 PUS7Q96PZ0 661 aaKnown RBP17.21■□□□□ 0.35
SRP54-201ENST00000216774 DAXXQ9UER7 740 aaPredicted RBP17.21■□□□□ 0.35
SRP54-201ENST00000216774 POGZQ7Z3K3 1410 aa17.21■□□□□ 0.35
SRP54-201ENST00000216774 FRMPD1Q5SYB0 1578 aa17.21■□□□□ 0.35
SRP54-201ENST00000216774 HECW2Q9P2P5 1572 aa17.2■□□□□ 0.34
SRP54-201ENST00000216774 AAMPQ13685 434 aa17.2■□□□□ 0.34
SRP54-201ENST00000216774 PHF23Q9BUL5 403 aaPredicted RBP17.19■□□□□ 0.34
SRP54-201ENST00000216774 TRAK1Q9UPV9 953 aa17.19■□□□□ 0.34
SRP54-201ENST00000216774 RGS3P49796 1198 aa17.19■□□□□ 0.34
SRP54-201ENST00000216774 NCBP3Q53F19 620 aaKnown RBP17.19■□□□□ 0.34
SRP54-201ENST00000216774 CHGAP10645 457 aaKnown RBP17.18■□□□□ 0.34
SRP54-201ENST00000216774 CLUAP1Q96AJ1 413 aa17.18■□□□□ 0.34
SRP54-201ENST00000216774 WDR63Q8IWG1 891 aa17.18■□□□□ 0.34
SRP54-201ENST00000216774 SLC12A5Q9H2X9 1139 aa17.18■□□□□ 0.34
SRP54-201ENST00000216774 VIRMAQ69YN4 1812 aaKnown RBP17.18■□□□□ 0.34
SRP54-201ENST00000216774 MAPK8IP3Q9UPT6 1336 aa17.18■□□□□ 0.34
SRP54-201ENST00000216774 NSD2O96028 1365 aa17.18■□□□□ 0.34
SRP54-201ENST00000216774 ABCC3O15438 1527 aa17.17■□□□□ 0.34
SRP54-201ENST00000216774 CCDC27Q2M243 656 aa17.17■□□□□ 0.34
SRP54-201ENST00000216774 IGHDP01880 384 aa17.17■□□□□ 0.34
SRP54-201ENST00000216774 CANXP27824 592 aaKnown RBP17.17■□□□□ 0.34
SRP54-201ENST00000216774 CFAP53Q96M91 514 aa17.16■□□□□ 0.34
SRP54-201ENST00000216774 GLI2P10070 1586 aa17.15■□□□□ 0.34
SRP54-201ENST00000216774 TCP11L2Q8N4U5 519 aa17.15■□□□□ 0.34
SRP54-201ENST00000216774 RARSP54136 660 aaKnown RBP17.14■□□□□ 0.33
SRP54-201ENST00000216774 PIK3C2BO00750 1634 aa17.14■□□□□ 0.33
SRP54-201ENST00000216774 CD109Q6YHK3 1445 aa17.14■□□□□ 0.33
SRP54-201ENST00000216774 ZMYM3Q14202 1370 aa17.13■□□□□ 0.33
SRP54-201ENST00000216774 ANKRD36BQ8N2N9 1353 aa17.13■□□□□ 0.33
SRP54-201ENST00000216774 EVC2Q86UK5 1308 aa17.13■□□□□ 0.33
SRP54-201ENST00000216774 NFKBIBQ15653 356 aa17.13■□□□□ 0.33
SRP54-201ENST00000216774 PANK1Q8TE04 598 aa17.13■□□□□ 0.33
SRP54-201ENST00000216774 CAMSAP1Q5T5Y3 1602 aa17.13■□□□□ 0.33
SRP54-201ENST00000216774 MTHFSP49914 203 aa17.13■□□□□ 0.33
SRP54-201ENST00000216774 COG6Q9Y2V7 657 aa17.13■□□□□ 0.33
SRP54-201ENST00000216774 ARHGEF28Q8N1W1 1705 aaKnown RBP17.12■□□□□ 0.33
SRP54-201ENST00000216774 TNNT2P45379 298 aaPredicted RBP17.12■□□□□ 0.33
SRP54-201ENST00000216774 TMEM132EQ6IEE7 984 aa17.12■□□□□ 0.33
SRP54-201ENST00000216774 TULP4Q9NRJ4 1543 aa17.12■□□□□ 0.33
SRP54-201ENST00000216774 NPM1P06748 294 aaKnown RBP eCLIP17.12■□□□□ 0.33
SRP54-201ENST00000216774 SLC4A3P48751 1232 aa17.12■□□□□ 0.33
SRP54-201ENST00000216774 GGT6Q6P531 493 aa17.12■□□□□ 0.33
SRP54-201ENST00000216774 PMFBP1Q8TBY8 1022 aa17.12■□□□□ 0.33
SRP54-201ENST00000216774 VGFO15240 615 aaPredicted RBP17.11■□□□□ 0.33
SRP54-201ENST00000216774 NEXMIFQ5QGS0 1516 aa17.11■□□□□ 0.33
SRP54-201ENST00000216774 NEUROD2Q15784 382 aa17.1■□□□□ 0.33
SRP54-201ENST00000216774 RRP7AQ9Y3A4 280 aaKnown RBP17.1■□□□□ 0.33
SRP54-201ENST00000216774 ADGRB2O60241 1585 aa17.1■□□□□ 0.33
SRP54-201ENST00000216774 FRAT1Q92837 279 aaPredicted RBP17.09■□□□□ 0.33
SRP54-201ENST00000216774 MYH16Q9H6N6 1097 aa17.09■□□□□ 0.33
SRP54-201ENST00000216774 SIGLEC1Q9BZZ2 1709 aa17.09■□□□□ 0.33
SRP54-201ENST00000216774 CFAP65Q6ZU64 1925 aaKnown RBP17.08■□□□□ 0.33
SRP54-201ENST00000216774 ZFYVE9O95405 1425 aa17.07■□□□□ 0.32
SRP54-201ENST00000216774 ARHGAP31Q2M1Z3 1444 aa17.07■□□□□ 0.32
SRP54-201ENST00000216774 USP19O94966 1318 aa17.07■□□□□ 0.32
SRP54-201ENST00000216774 GSE1Q14687 1217 aa17.07■□□□□ 0.32
SRP54-201ENST00000216774 CT47B1P0C2W7 299 aaPredicted RBP17.07■□□□□ 0.32
SRP54-201ENST00000216774 NEO1Q92859 1461 aa17.06■□□□□ 0.32
SRP54-201ENST00000216774 ABCC11Q96J66 1382 aa17.05■□□□□ 0.32
SRP54-201ENST00000216774 RLBP1P12271 317 aa17.04■□□□□ 0.32
SRP54-201ENST00000216774 U2AF1L5P0DN76 240 aaPredicted RBP17.04■□□□□ 0.32
SRP54-201ENST00000216774 U2AF1Q01081 240 aaKnown RBP eCLIP17.04■□□□□ 0.322e-23■■■■■ 60.6
SRP54-201ENST00000216774 RWDD1Q9H446 243 aaPredicted RBP17.03■□□□□ 0.32
SRP54-201ENST00000216774 PCDHB15Q9Y5E8 787 aa17.03■□□□□ 0.32
SRP54-201ENST00000216774 NLRP1Q9C000 1473 aa17.03■□□□□ 0.32
SRP54-201ENST00000216774 DIP2CQ9Y2E4 1556 aa17.02■□□□□ 0.32
SRP54-201ENST00000216774 BECN1Q14457 450 aa17.01■□□□□ 0.31
SRP54-201ENST00000216774 A0A1W2PP64 1363 aa17.01■□□□□ 0.31
SRP54-201ENST00000216774 MED14O60244 1454 aa17.01■□□□□ 0.31
SRP54-201ENST00000216774 MVPQ14764 893 aaKnown RBP17■□□□□ 0.31
SRP54-201ENST00000216774 CABP2Q9NPB3 220 aa17■□□□□ 0.31
SRP54-201ENST00000216774 SLC52A1Q9NWF4 448 aa17■□□□□ 0.31
SRP54-201ENST00000216774 ZKSCAN2Q63HK3 967 aa17■□□□□ 0.31
SRP54-201ENST00000216774 COL3A1P02461 1466 aaPredicted RBP16.99■□□□□ 0.31
SRP54-201ENST00000216774 ATAD2Q6PL18 1390 aa16.99■□□□□ 0.31
SRP54-201ENST00000216774 SEC24BO95487 1268 aa16.99■□□□□ 0.31
SRP54-201ENST00000216774 BCL2L13Q9BXK5 485 aa16.99■□□□□ 0.31
SRP54-201ENST00000216774 UPF2Q9HAU5 1272 aaKnown RBP16.99■□□□□ 0.31
SRP54-201ENST00000216774 TNNQ9UQP3 1299 aa16.99■□□□□ 0.31
SRP54-201ENST00000216774 ANKRD26Q9UPS8 1709 aa16.98■□□□□ 0.31
SRP54-201ENST00000216774 PLEKHF1Q96S99 279 aa16.98■□□□□ 0.31
SRP54-201ENST00000216774 PDZRN3Q9UPQ7 1066 aa16.98■□□□□ 0.31
SRP54-201ENST00000216774 CLTCQ00610 1675 aaKnown RBP16.98■□□□□ 0.31
SRP54-201ENST00000216774 IL16Q14005 1332 aa16.98■□□□□ 0.31
SRP54-201ENST00000216774 NUTM2DQ5VT03 806 aaPredicted RBP16.98■□□□□ 0.31
SRP54-201ENST00000216774 PTPRMP28827 1452 aa16.97■□□□□ 0.31
SRP54-201ENST00000216774 FRAT2O75474 233 aaPredicted RBP16.97■□□□□ 0.31
SRP54-201ENST00000216774 IDI1Q13907 227 aa16.97■□□□□ 0.31
SRP54-201ENST00000216774 DZIP1LQ8IYY4 767 aaKnown RBP16.97■□□□□ 0.31
SRP54-201ENST00000216774 FTSJ3Q8IY81 847 aaKnown RBP16.96■□□□□ 0.31
SRP54-201ENST00000216774 TERF2IPQ9NYB0 399 aa16.96■□□□□ 0.31
SRP54-201ENST00000216774 IL27Q8NEV9 243 aa16.96■□□□□ 0.31
SRP54-201ENST00000216774 TBC1D32Q96NH3 1257 aa16.96■□□□□ 0.31
SRP54-201ENST00000216774 RAPGEF3O95398 923 aa16.95■□□□□ 0.3
SRP54-201ENST00000216774 SRPK2P78362 688 aaKnown RBP16.95■□□□□ 0.3
SRP54-201ENST00000216774 TMEM131LA2VDJ0 1609 aa16.95■□□□□ 0.3
SRP54-201ENST00000216774 TMPOP42166 694 aaKnown RBP16.95■□□□□ 0.3
SRP54-201ENST00000216774 RICTORQ6R327 1708 aa16.94■□□□□ 0.3
SRP54-201ENST00000216774 OSCARQ8IYS5 282 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms