RNA–Protein interactions for RNA: ENST00000216414.12

CDKN3-201, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 1 (best)

Gene CDKN3, Length 373 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-201ENST00000216414 HAP1P54257 671 aaPredicted RBP7.94□□□□□ -1.14
CDKN3-201ENST00000216414 THAP11Q96EK4 314 aa7.94□□□□□ -1.14
CDKN3-201ENST00000216414 PHOX2BQ99453 314 aa7.94□□□□□ -1.14
CDKN3-201ENST00000216414 PRDM9Q9NQV7 894 aa7.94□□□□□ -1.14
CDKN3-201ENST00000216414 FAM160A2Q8N612 972 aaPredicted RBP7.93□□□□□ -1.14
CDKN3-201ENST00000216414 FAM181BA6NEQ2 426 aa7.91□□□□□ -1.14
CDKN3-201ENST00000216414 TERTO14746 1132 aaKnown RBP7.91□□□□□ -1.14
CDKN3-201ENST00000216414 RNF19BQ6ZMZ0 732 aa7.91□□□□□ -1.14
CDKN3-201ENST00000216414 SENP2Q9HC62 589 aa7.91□□□□□ -1.14
CDKN3-201ENST00000216414 GRIPAP1Q4V328 841 aa7.9□□□□□ -1.14
CDKN3-201ENST00000216414 BRICD5Q6PL45 260 aa7.9□□□□□ -1.14
CDKN3-201ENST00000216414 ATP13A2Q9NQ11 1180 aa7.89□□□□□ -1.15
CDKN3-201ENST00000216414 SALL2Q9Y467 1007 aaPredicted RBP7.89□□□□□ -1.15
CDKN3-201ENST00000216414 SNIP1Q8TAD8 396 aaKnown RBP7.88□□□□□ -1.15
CDKN3-201ENST00000216414 MSS51Q4VC12 460 aa7.87□□□□□ -1.15
CDKN3-201ENST00000216414 WNT7AO00755 349 aa7.86□□□□□ -1.15
CDKN3-201ENST00000216414 SNRPBP14678 240 aaKnown RBP7.86□□□□□ -1.15
CDKN3-201ENST00000216414 Q3C1V9 767 aa7.86□□□□□ -1.15
CDKN3-201ENST00000216414 SLC16A10Q8TF71 515 aa7.86□□□□□ -1.15
CDKN3-201ENST00000216414 KIFC2Q96AC6 838 aa7.86□□□□□ -1.15
CDKN3-201ENST00000216414 TRIM47Q96LD4 638 aa7.86□□□□□ -1.15
CDKN3-201ENST00000216414 CD46P15529 392 aa7.85□□□□□ -1.15
CDKN3-201ENST00000216414 SMPD1P17405 629 aa7.85□□□□□ -1.15
CDKN3-201ENST00000216414 MAP2K5Q13163 448 aa7.85□□□□□ -1.15
CDKN3-201ENST00000216414 TULP1O00294 542 aaPredicted RBP7.84□□□□□ -1.15
CDKN3-201ENST00000216414 KDM2AQ9Y2K7 1162 aa7.84□□□□□ -1.15
CDKN3-201ENST00000216414 KDM4AO75164 1064 aa7.83□□□□□ -1.16
CDKN3-201ENST00000216414 MDM2Q00987 491 aaPredicted RBP7.83□□□□□ -1.16
CDKN3-201ENST00000216414 TRIM32Q13049 653 aa7.82□□□□□ -1.16
CDKN3-201ENST00000216414 HLA-CQ95604 372 aa7.82□□□□□ -1.16
CDKN3-201ENST00000216414 USB1Q9BQ65 265 aaKnown RBP7.82□□□□□ -1.16
CDKN3-201ENST00000216414 IRF6O14896 467 aa7.81□□□□□ -1.16
CDKN3-201ENST00000216414 MMP16P51512 607 aa7.81□□□□□ -1.16
CDKN3-201ENST00000216414 CCDC24Q8N4L8 307 aa7.81□□□□□ -1.16
CDKN3-201ENST00000216414 REPIN1Q9BWE0 567 aaKnown RBP7.81□□□□□ -1.16
CDKN3-201ENST00000216414 J3QL48 77 aa7.8□□□□□ -1.16
CDKN3-201ENST00000216414 MRGPRX2Q96LB1 330 aa7.8□□□□□ -1.16
CDKN3-201ENST00000216414 MINK1Q8N4C8 1332 aaPredicted RBP7.78□□□□□ -1.16
CDKN3-201ENST00000216414 DXOO77932 396 aaKnown RBP7.78□□□□□ -1.16
CDKN3-201ENST00000216414 USP46P62068 366 aa7.78□□□□□ -1.16
CDKN3-201ENST00000216414 LCE2CQ5TA81 110 aa7.78□□□□□ -1.16
CDKN3-201ENST00000216414 HPS1Q92902 700 aa7.78□□□□□ -1.16
CDKN3-201ENST00000216414 CCDC102AQ96A19 550 aa7.78□□□□□ -1.16
CDKN3-201ENST00000216414 HOXA2O43364 376 aa7.77□□□□□ -1.17
CDKN3-201ENST00000216414 GUCA2AQ02747 115 aa7.77□□□□□ -1.17
CDKN3-201ENST00000216414 ZSCAN1Q8NBB4 408 aa7.77□□□□□ -1.17
CDKN3-201ENST00000216414 NXF1Q9UBU9 619 aaKnown RBP7.77□□□□□ -1.17
CDKN3-201ENST00000216414 KRI1Q8N9T8 703 aaKnown RBP7.76□□□□□ -1.17
CDKN3-201ENST00000216414 IRF7Q92985 503 aa7.76□□□□□ -1.17
CDKN3-201ENST00000216414 GPCPD1Q9NPB8 672 aa7.75□□□□□ -1.17
CDKN3-201ENST00000216414 CLCN1P35523 988 aa7.74□□□□□ -1.17
CDKN3-201ENST00000216414 RC3H1Q5TC82 1133 aaKnown RBP7.74□□□□□ -1.17
CDKN3-201ENST00000216414 NPAS3Q8IXF0 933 aa7.74□□□□□ -1.17
CDKN3-201ENST00000216414 SYMPKQ92797 1274 aaKnown RBP7.74□□□□□ -1.17
CDKN3-201ENST00000216414 JUNDP17535 347 aa7.73□□□□□ -1.17
CDKN3-201ENST00000216414 GMPRP36959 345 aa7.73□□□□□ -1.17
CDKN3-201ENST00000216414 NUTM1Q86Y26 1132 aa7.73□□□□□ -1.17
CDKN3-201ENST00000216414 FAM217BQ9NTX9 383 aaPredicted RBP7.73□□□□□ -1.17
CDKN3-201ENST00000216414 WNT7BP56706 349 aa7.72□□□□□ -1.17
CDKN3-201ENST00000216414 SKOR1P84550 965 aa7.72□□□□□ -1.17
CDKN3-201ENST00000216414 VSIG10Q8N0Z9 540 aa7.72□□□□□ -1.17
CDKN3-201ENST00000216414 LOC100996750A0A140TA64 210 aa7.71□□□□□ -1.18
CDKN3-201ENST00000216414 ALDH1A1P00352 501 aa7.71□□□□□ -1.18
CDKN3-201ENST00000216414 KRTAP4-6Q9BYQ5 205 aa7.71□□□□□ -1.18
CDKN3-201ENST00000216414 NUDT12Q9BQG2 462 aa7.7□□□□□ -1.18
CDKN3-201ENST00000216414 C6orf229H3BNL8 230 aa7.69□□□□□ -1.18
CDKN3-201ENST00000216414 RETREG3Q86VR2 466 aa7.69□□□□□ -1.18
CDKN3-201ENST00000216414 FDX1P10109 184 aa7.68□□□□□ -1.18
CDKN3-201ENST00000216414 WASF2Q9Y6W5 498 aa7.68□□□□□ -1.18
CDKN3-201ENST00000216414 CAPN5O15484 640 aaPredicted RBP7.67□□□□□ -1.18
CDKN3-201ENST00000216414 PTCRAQ6ISU1 281 aaPredicted RBP7.67□□□□□ -1.18
CDKN3-201ENST00000216414 EHBP1Q8NDI1 1231 aa7.67□□□□□ -1.18
CDKN3-201ENST00000216414 H3BM21 787 aa7.66□□□□□ -1.18
CDKN3-201ENST00000216414 VEGFBP49765 207 aa7.66□□□□□ -1.18
CDKN3-201ENST00000216414 PCDHGC3Q9UN70 934 aa7.66□□□□□ -1.18
CDKN3-201ENST00000216414 MS4A1P11836 297 aa7.65□□□□□ -1.18
CDKN3-201ENST00000216414 BMP1P13497 986 aa7.65□□□□□ -1.18
CDKN3-201ENST00000216414 LORP23490 312 aaPredicted RBP7.65□□□□□ -1.18
CDKN3-201ENST00000216414 SSTR3P32745 418 aaPredicted RBP7.65□□□□□ -1.18
CDKN3-201ENST00000216414 TTLL12Q14166 644 aaPredicted RBP7.65□□□□□ -1.18
CDKN3-201ENST00000216414 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.65□□□□□ -1.18
CDKN3-201ENST00000216414 CCNYL3P0C7X3 344 aa7.64□□□□□ -1.19
CDKN3-201ENST00000216414 SPIRE2Q8WWL2 714 aa7.64□□□□□ -1.19
CDKN3-201ENST00000216414 NDUFV2P19404 249 aa7.63□□□□□ -1.19
CDKN3-201ENST00000216414 TRIM46Q7Z4K8 759 aa7.63□□□□□ -1.19
CDKN3-201ENST00000216414 SIAH2O43255 324 aa7.62□□□□□ -1.19
CDKN3-201ENST00000216414 SH3BP2P78314 561 aa7.62□□□□□ -1.19
CDKN3-201ENST00000216414 SUZ12Q15022 739 aaKnown RBP7.62□□□□□ -1.19
CDKN3-201ENST00000216414 LINC01559Q495D7 138 aa7.62□□□□□ -1.19
CDKN3-201ENST00000216414 MOXD2PA6NHM9 499 aa7.61□□□□□ -1.19
CDKN3-201ENST00000216414 PTPRNQ16849 979 aa7.61□□□□□ -1.19
CDKN3-201ENST00000216414 PRR7Q8TB68 274 aa7.61□□□□□ -1.19
CDKN3-201ENST00000216414 UNC93B1Q9H1C4 597 aa7.61□□□□□ -1.19
CDKN3-201ENST00000216414 ERBB4Q15303 1308 aa7.6□□□□□ -1.19
CDKN3-201ENST00000216414 MTMR2Q13614 643 aa7.6□□□□□ -1.19
CDKN3-201ENST00000216414 GIGYF2Q6Y7W6 1299 aaKnown RBP7.59□□□□□ -1.19
CDKN3-201ENST00000216414 BAP1Q92560 729 aa7.59□□□□□ -1.19
CDKN3-201ENST00000216414 ZFP42Q96MM3 310 aa7.59□□□□□ -1.19
CDKN3-201ENST00000216414 KCNH2Q12809 1159 aa7.58□□□□□ -1.2
CDKN3-201ENST00000216414 SCARF1Q14162 830 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 105.2 ms