RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 RAD21O60216 631 aa16.4■□□□□ 0.22
SF3A1-201ENST00000215793 SETQ01105 290 aaPredicted RBP16.4■□□□□ 0.22
SF3A1-201ENST00000215793 PANK1Q8TE04 598 aa16.4■□□□□ 0.22
SF3A1-201ENST00000215793 FGD5Q6ZNL6 1462 aa16.4■□□□□ 0.22
SF3A1-201ENST00000215793 WASHC2AQ641Q2 1341 aa16.39■□□□□ 0.21
SF3A1-201ENST00000215793 ADAMTS8Q9UP79 889 aa16.38■□□□□ 0.21
SF3A1-201ENST00000215793 MTHFSP49914 203 aa16.38■□□□□ 0.21
SF3A1-201ENST00000215793 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.38■□□□□ 0.21
SF3A1-201ENST00000215793 WWC1Q8IX03 1113 aa16.38■□□□□ 0.21
SF3A1-201ENST00000215793 PSMA5P28066 241 aa16.38■□□□□ 0.21
SF3A1-201ENST00000215793 CLASRPQ8N2M8 674 aaKnown RBP16.38■□□□□ 0.21
SF3A1-201ENST00000215793 TCP11L2Q8N4U5 519 aa16.38■□□□□ 0.21
SF3A1-201ENST00000215793 NEUROD6Q96NK8 337 aa16.38■□□□□ 0.21
SF3A1-201ENST00000215793 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.37■□□□□ 0.21
SF3A1-201ENST00000215793 NINLQ9Y2I6 1382 aa16.37■□□□□ 0.21
SF3A1-201ENST00000215793 CABP2Q9NPB3 220 aa16.37■□□□□ 0.21
SF3A1-201ENST00000215793 NLRP6P59044 892 aa16.36■□□□□ 0.21
SF3A1-201ENST00000215793 GAS2L2Q8NHY3 880 aa16.36■□□□□ 0.21
SF3A1-201ENST00000215793 NLRP2Q9NX02 1062 aa16.36■□□□□ 0.21
SF3A1-201ENST00000215793 LRRC9Q6ZRR7 1453 aa16.36■□□□□ 0.21
SF3A1-201ENST00000215793 WASHC4Q2M389 1173 aa16.36■□□□□ 0.21
SF3A1-201ENST00000215793 ATF3P18847 181 aa16.36■□□□□ 0.21
SF3A1-201ENST00000215793 CNTROBQ8N137 903 aa16.36■□□□□ 0.21
SF3A1-201ENST00000215793 FAM43AQ8N2R8 423 aa16.35■□□□□ 0.21
SF3A1-201ENST00000215793 FYCO1Q9BQS8 1478 aa16.35■□□□□ 0.21
SF3A1-201ENST00000215793 CCDC30Q5VVM6 783 aa16.35■□□□□ 0.21
SF3A1-201ENST00000215793 RRBP1Q9P2E9 1410 aaKnown RBP16.35■□□□□ 0.21
SF3A1-201ENST00000215793 NAT10Q9H0A0 1025 aaKnown RBP16.35■□□□□ 0.21
SF3A1-201ENST00000215793 MCM2P49736 904 aa16.34■□□□□ 0.21
SF3A1-201ENST00000215793 XBP1P17861 261 aa16.34■□□□□ 0.21
SF3A1-201ENST00000215793 AIMP1Q12904 312 aaKnown RBP16.34■□□□□ 0.21
SF3A1-201ENST00000215793 TEX35Q5T0J7 233 aa16.34■□□□□ 0.21
SF3A1-201ENST00000215793 MRE11P49959 708 aa16.34■□□□□ 0.21
SF3A1-201ENST00000215793 FAM69CQ0P6D2 419 aa16.34■□□□□ 0.21
SF3A1-201ENST00000215793 TMEM132EQ6IEE7 984 aa16.33■□□□□ 0.21
SF3A1-201ENST00000215793 RBM33Q96EV2 1170 aaKnown RBP16.33■□□□□ 0.21
SF3A1-201ENST00000215793 CCDC43Q96MW1 224 aaKnown RBP16.33■□□□□ 0.21
SF3A1-201ENST00000215793 BRMS1Q9HCU9 246 aa16.33■□□□□ 0.21
SF3A1-201ENST00000215793 NFKBIBQ15653 356 aa16.33■□□□□ 0.21
SF3A1-201ENST00000215793 PDE3AQ14432 1141 aa16.33■□□□□ 0.2
SF3A1-201ENST00000215793 CASKIN1Q8WXD9 1431 aa16.33■□□□□ 0.2
SF3A1-201ENST00000215793 SDF4Q9BRK5 362 aa16.33■□□□□ 0.2
SF3A1-201ENST00000215793 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.32■□□□□ 0.2
SF3A1-201ENST00000215793 SURF6O75683 361 aaKnown RBP16.32■□□□□ 0.2
SF3A1-201ENST00000215793 MBD3O95983 291 aa16.32■□□□□ 0.2
SF3A1-201ENST00000215793 PDCP20941 246 aa16.32■□□□□ 0.2
SF3A1-201ENST00000215793 FSD1Q9BTV5 496 aa16.32■□□□□ 0.2
SF3A1-201ENST00000215793 ARGLU1Q9NWB6 273 aaPredicted RBP16.32■□□□□ 0.2
SF3A1-201ENST00000215793 PPP2R1AP30153 589 aa16.32■□□□□ 0.2
SF3A1-201ENST00000215793 IFT57Q9NWB7 429 aa16.32■□□□□ 0.2
SF3A1-201ENST00000215793 NCOA2Q15596 1464 aa16.32■□□□□ 0.2
SF3A1-201ENST00000215793 HIP1O00291 1037 aa16.32■□□□□ 0.2
SF3A1-201ENST00000215793 MNS1Q8NEH6 495 aa16.31■□□□□ 0.2
SF3A1-201ENST00000215793 SCAPERQ9BY12 1400 aa16.31■□□□□ 0.2
SF3A1-201ENST00000215793 CFAP70Q5T0N1 1121 aa16.31■□□□□ 0.2
SF3A1-201ENST00000215793 OLFM4Q6UX06 510 aa16.31■□□□□ 0.2
SF3A1-201ENST00000215793 GCC1Q96CN9 775 aa16.31■□□□□ 0.2
SF3A1-201ENST00000215793 ZNF771Q7L3S4 317 aaPredicted RBP16.31■□□□□ 0.2
SF3A1-201ENST00000215793 HFM1A2PYH4 1435 aa16.3■□□□□ 0.2
SF3A1-201ENST00000215793 SART3Q15020 963 aaKnown RBP16.3■□□□□ 0.2
SF3A1-201ENST00000215793 FAM13BQ9NYF5 915 aa16.3■□□□□ 0.2
SF3A1-201ENST00000215793 RAD54L2Q9Y4B4 1467 aa16.3■□□□□ 0.2
SF3A1-201ENST00000215793 LETM1O95202 739 aaPredicted RBP16.3■□□□□ 0.2
SF3A1-201ENST00000215793 ACBD3Q9H3P7 528 aa16.3■□□□□ 0.2
SF3A1-201ENST00000215793 PRKAR2BP31323 418 aa16.3■□□□□ 0.2
SF3A1-201ENST00000215793 CDR1P51861 262 aa16.3■□□□□ 0.2
SF3A1-201ENST00000215793 TBC1D2BQ9UPU7 963 aa16.3■□□□□ 0.2
SF3A1-201ENST00000215793 GPRASP1Q5JY77 1395 aa16.29■□□□□ 0.2
SF3A1-201ENST00000215793 KIF21BO75037 1637 aa16.29■□□□□ 0.2
SF3A1-201ENST00000215793 NASPP49321 788 aaPredicted RBP16.29■□□□□ 0.2
SF3A1-201ENST00000215793 RABEP1Q15276 862 aa16.29■□□□□ 0.2
SF3A1-201ENST00000215793 PLEKHO1Q53GL0 409 aaPredicted RBP16.29■□□□□ 0.2
SF3A1-201ENST00000215793 FBXW7Q969H0 707 aa16.29■□□□□ 0.2
SF3A1-201ENST00000215793 ERC1Q8IUD2 1116 aa16.29■□□□□ 0.2
SF3A1-201ENST00000215793 EXOSC9Q06265 439 aaKnown RBP16.28■□□□□ 0.2
SF3A1-201ENST00000215793 TWISTNBQ3B726 338 aaPredicted RBP16.28■□□□□ 0.2
SF3A1-201ENST00000215793 CCDC39Q9UFE4 941 aa16.28■□□□□ 0.2
SF3A1-201ENST00000215793 NEK4P51957 841 aa16.28■□□□□ 0.2
SF3A1-201ENST00000215793 CDCA7LQ96GN5 454 aa16.28■□□□□ 0.2
SF3A1-201ENST00000215793 FOSBP53539 338 aa16.27■□□□□ 0.2
SF3A1-201ENST00000215793 CCDC27Q2M243 656 aa16.27■□□□□ 0.2
SF3A1-201ENST00000215793 CT47B1P0C2W7 299 aaPredicted RBP16.27■□□□□ 0.19
SF3A1-201ENST00000215793 RUFY1Q96T51 708 aa16.27■□□□□ 0.19
SF3A1-201ENST00000215793 AFAP1Q8N556 730 aa16.26■□□□□ 0.19
SF3A1-201ENST00000215793 PDZRN3Q9UPQ7 1066 aa16.26■□□□□ 0.19
SF3A1-201ENST00000215793 OFD1O75665 1012 aa16.26■□□□□ 0.19
SF3A1-201ENST00000215793 GNAI2P04899 355 aa16.26■□□□□ 0.19
SF3A1-201ENST00000215793 NUTM2GQ5VZR2 741 aa16.26■□□□□ 0.19
SF3A1-201ENST00000215793 ABTB2Q8N961 1025 aa16.26■□□□□ 0.19
SF3A1-201ENST00000215793 TRAK2O60296 914 aa16.26■□□□□ 0.19
SF3A1-201ENST00000215793 VSIG10Q8N0Z9 540 aa16.26■□□□□ 0.19
SF3A1-201ENST00000215793 KINO60870 393 aaKnown RBP16.25■□□□□ 0.19
SF3A1-201ENST00000215793 NAP1L1P55209 391 aaKnown RBP16.25■□□□□ 0.19
SF3A1-201ENST00000215793 HSP90B2PQ58FF3 399 aa16.25■□□□□ 0.19
SF3A1-201ENST00000215793 AK7Q96M32 723 aa16.25■□□□□ 0.19
SF3A1-201ENST00000215793 ANO8Q9HCE9 1232 aaPredicted RBP16.25■□□□□ 0.19
SF3A1-201ENST00000215793 CT47A1Q5JQC4 288 aaPredicted RBP16.24■□□□□ 0.19
SF3A1-201ENST00000215793 MEX3CQ5U5Q3 659 aaKnown RBP16.23■□□□□ 0.19
SF3A1-201ENST00000215793 ZNF692Q9BU19 519 aaPredicted RBP16.23■□□□□ 0.19
SF3A1-201ENST00000215793 RNF214Q8ND24 703 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms