RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 AGPSO00116 658 aa5.13□□□□□ -1.59
CD44-239ENST00000639002 CES2O00748 559 aa5.13□□□□□ -1.59
CD44-239ENST00000639002 A1BGP04217 495 aa5.13□□□□□ -1.59
CD44-239ENST00000639002 APEHP13798 732 aaKnown RBP5.13□□□□□ -1.59
CD44-239ENST00000639002 ATF7P17544 494 aaPredicted RBP5.13□□□□□ -1.59
CD44-239ENST00000639002 MMP13P45452 471 aa5.13□□□□□ -1.59
CD44-239ENST00000639002 DIO1P49895 249 aa5.13□□□□□ -1.59
CD44-239ENST00000639002 TIAL1Q01085 375 aaKnown RBP eCLIP5.13□□□□□ -1.59
CD44-239ENST00000639002 CERKLQ49MI3 558 aaPredicted RBP5.13□□□□□ -1.59
CD44-239ENST00000639002 AWAT1Q58HT5 328 aa5.13□□□□□ -1.59
CD44-239ENST00000639002 CXorf57Q6NSI4 855 aaKnown RBP5.13□□□□□ -1.59
CD44-239ENST00000639002 PTCHD4Q6ZW05 846 aa5.13□□□□□ -1.59
CD44-239ENST00000639002 LINC01465Q8N7H1 131 aa5.13□□□□□ -1.59
CD44-239ENST00000639002 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.13□□□□□ -1.59
CD44-239ENST00000639002 SPSB4Q96A44 273 aa5.13□□□□□ -1.59
CD44-239ENST00000639002 WDYHV1Q96HA8 205 aa5.13□□□□□ -1.59
CD44-239ENST00000639002 EFHD1Q9BUP0 239 aa5.13□□□□□ -1.59
CD44-239ENST00000639002 MBD3L4A6NDZ8 208 aaPredicted RBP5.12□□□□□ -1.59
CD44-239ENST00000639002 MBD3L3A6NE82 208 aaPredicted RBP5.12□□□□□ -1.59
CD44-239ENST00000639002 UBE2Q2LH0YL09 131 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 CD3EAPO15446 510 aaKnown RBP5.12□□□□□ -1.59
CD44-239ENST00000639002 SRGAP2O75044 1071 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 USP1O94782 785 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 NTN1O95631 604 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 BMP15O95972 392 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 MT-CO3P00414 261 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 SEC23BQ15437 767 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 C3orf38Q5JPI3 329 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 AWAT2Q6E213 333 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 KRT73Q86Y46 540 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 CHPFQ8IZ52 775 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 NMD3Q96D46 503 aaKnown RBP5.12□□□□□ -1.59
CD44-239ENST00000639002 COQ8BQ96D53 544 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 SUCLG2Q96I99 432 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 VN1R3Q9BXE9 311 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 SACM1LQ9NTJ5 587 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 TFCP2L1Q9NZI6 479 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 USP22Q9UPT9 525 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 AFG3L2Q9Y4W6 797 aa5.12□□□□□ -1.59
CD44-239ENST00000639002 BTBD19C9JJ37 291 aa5.11□□□□□ -1.59
CD44-239ENST00000639002 PSMD9O00233 223 aa5.11□□□□□ -1.59
CD44-239ENST00000639002 RRP9O43818 475 aaKnown RBP5.11□□□□□ -1.59
CD44-239ENST00000639002 HGFP14210 728 aa5.11□□□□□ -1.59
CD44-239ENST00000639002 HOXD9P28356 352 aaPredicted RBP5.11□□□□□ -1.59
CD44-239ENST00000639002 PRKAR1BP31321 381 aa5.11□□□□□ -1.59
CD44-239ENST00000639002 COPB1P53618 953 aaKnown RBP5.11□□□□□ -1.59
CD44-239ENST00000639002 FMO1Q01740 532 aa5.11□□□□□ -1.59
CD44-239ENST00000639002 NFE2Q16621 373 aaPredicted RBP5.11□□□□□ -1.59
CD44-239ENST00000639002 ZNF750Q32MQ0 723 aa5.11□□□□□ -1.59
CD44-239ENST00000639002 FAM102BQ5T8I3 360 aa5.11□□□□□ -1.59
CD44-239ENST00000639002 TECPR1Q7Z6L1 1165 aa5.11□□□□□ -1.59
CD44-239ENST00000639002 IGFBPL1Q8WX77 278 aa5.11□□□□□ -1.59
CD44-239ENST00000639002 KAZALD1Q96I82 304 aa5.11□□□□□ -1.59
CD44-239ENST00000639002 CCDC17Q96LX7 622 aa5.11□□□□□ -1.59
CD44-239ENST00000639002 FYTTD1Q96QD9 318 aaKnown RBP5.11□□□□□ -1.59
CD44-239ENST00000639002 PPP1R9BQ96SB3 815 aa5.11□□□□□ -1.59
CD44-239ENST00000639002 COL20A1Q9P218 1284 aa5.11□□□□□ -1.59
CD44-239ENST00000639002 DDX20Q9UHI6 824 aaKnown RBP5.11□□□□□ -1.59
CD44-239ENST00000639002 LOC102723971A0A1B0GUV8 181 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 CFAP69A5D8W1 941 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 ISM1B1AKI9 464 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 M0R3H8 397 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 ADAM10O14672 748 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 CCP110O43303 1012 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 FRS3O43559 492 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 GCATO75600 419 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 RASAL1O95294 804 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 IL1R1P14778 569 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 EPHA3P29320 983 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 MCM5P33992 734 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 PTDSS1P48651 473 aaKnown RBP5.1□□□□□ -1.59
CD44-239ENST00000639002 SUMO2P61956 95 aaKnown RBP5.1□□□□□ -1.59
CD44-239ENST00000639002 LAMB3Q13751 1172 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 CNGA2Q16280 664 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 INSCQ1MX18 579 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 PLEKHG6Q3KR16 790 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 CACHD1Q5VU97 1274 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 RAB11FIP4Q86YS3 637 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 NRACQ8N912 160 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 PRSS3P2Q8NHM4 247 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 FAM118BQ9BPY3 351 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 TRNAU1APQ9NX07 287 aaKnown RBP5.1□□□□□ -1.59
CD44-239ENST00000639002 GAR1Q9NY12 217 aaKnown RBP5.1□□□□□ -1.59
CD44-239ENST00000639002 ASAP1Q9ULH1 1129 aa5.1□□□□□ -1.59
CD44-239ENST00000639002 TMEM232C9JQI7 657 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 FAM227AF5H4B4 570 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 H3BNC9 293 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 SCGB1D2O95969 90 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 CREB1P16220 341 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 KLRC1P26715 233 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 ITGA8P53708 1063 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 FOXG1P55316 489 aaPredicted RBP5.09□□□□□ -1.59
CD44-239ENST00000639002 RPS16P62249 146 aaKnown RBP5.09□□□□□ -1.59
CD44-239ENST00000639002 DEUP1Q05D60 604 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 ZNF268Q14587 947 aaPredicted RBP5.09□□□□□ -1.59
CD44-239ENST00000639002 LARS2Q15031 903 aaKnown RBP5.09□□□□□ -1.59
CD44-239ENST00000639002 ODR4Q5SWX8 454 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 IRF2BP2Q7Z5L9 587 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 SESTD1Q86VW0 696 aa5.09□□□□□ -1.59
CD44-239ENST00000639002 METTL25Q8N6Q8 603 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms