RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 SPTA1P02549 2419 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 FAM149AA5PLN7 773 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 HNRNPDLO14979 420 aaKnown RBP17.45■□□□□ 0.38
CLN3-264ENST00000637985 ADH1CP00326 375 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 PIGRP01833 764 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 HOXB2P14652 356 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 PLCG1P19174 1290 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 MAOBP27338 520 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 ZNF131P52739 623 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 CFAP221Q4G0U5 840 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 INTS6LQ5JSJ4 861 aaKnown RBP17.45■□□□□ 0.38
CLN3-264ENST00000637985 WDR45BQ5MNZ6 344 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 RAD54LQ92698 747 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 REEP2Q9BRK0 252 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 MSTO1Q9BUK6 570 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 RNF38Q9H0F5 515 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 PARVGQ9HBI0 331 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 GTF3C4Q9UKN8 822 aa17.45■□□□□ 0.38
CLN3-264ENST00000637985 CABIN1Q9Y6J0 2220 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 A0A1B0GTW7 788 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 TBC1D3BA6NDS4 549 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 E9PAM4 449 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 SCAMP3O14828 347 aaKnown RBP17.44■□□□□ 0.38
CLN3-264ENST00000637985 OLFM2O95897 454 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 ADH5P11766 374 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 NDUFV2P19404 249 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 ABCD1P33897 745 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 DHX8Q14562 1220 aaKnown RBP17.44■□□□□ 0.38
CLN3-264ENST00000637985 MCM6Q14566 821 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 SMAD1Q15797 465 aaKnown RBP17.44■□□□□ 0.38
CLN3-264ENST00000637985 SV2CQ496J9 727 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 ETFBKMTQ8IXQ9 262 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 PDCL2Q8N4E4 241 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 MYCT1Q8N699 235 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 DNASE2BQ8WZ79 361 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 GAREM1Q9H706 876 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 PRDM16Q9HAZ2 1276 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 TM7SF3Q9NS93 570 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 DDX43Q9NXZ2 648 aaKnown RBP17.44■□□□□ 0.38
CLN3-264ENST00000637985 PCDHGB2Q9Y5G2 931 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 SRPRBQ9Y5M8 271 aaKnown RBP17.44■□□□□ 0.38
CLN3-264ENST00000637985 CLIC4Q9Y696 253 aa17.44■□□□□ 0.38
CLN3-264ENST00000637985 KNL1Q8NG31 2342 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 K7ELQ4 463 aaPredicted RBP17.43■□□□□ 0.38
CLN3-264ENST00000637985 NDUFS2O75306 463 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 CILPO75339 1184 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 FAM13AO94988 1023 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 KRT18P05783 430 aaKnown RBP17.43■□□□□ 0.38
CLN3-264ENST00000637985 ACAT1P24752 427 aaKnown RBP17.43■□□□□ 0.38
CLN3-264ENST00000637985 NTSR1P30989 418 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 DDIT3P35638 169 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 CCDC142Q17RM4 750 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 MIB1Q86YT6 1006 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 SCN4BQ8IWT1 228 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 LARP4BQ92615 738 aaKnown RBP17.43■□□□□ 0.38
CLN3-264ENST00000637985 FUBP3Q96I24 572 aaKnown RBP eCLIP17.43■□□□□ 0.38
CLN3-264ENST00000637985 CD93Q9NPY3 652 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 CCDC39Q9UFE4 941 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 FNDC3AQ9Y2H6 1198 aaKnown RBP17.43■□□□□ 0.38
CLN3-264ENST00000637985 STARD13Q9Y3M8 1113 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 NFE2L3Q9Y4A8 694 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 CPQQ9Y646 472 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 MORC2Q9Y6X9 1032 aaPredicted RBP17.43■□□□□ 0.38
CLN3-264ENST00000637985 MGAQ8IWI9 3026 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 ATMQ13315 3056 aa17.43■□□□□ 0.38
CLN3-264ENST00000637985 ZNF840PA6NDX5 716 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 CAPN9O14815 690 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 FLRT2O43155 660 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 ZBTB24O43167 697 aaPredicted RBP17.42■□□□□ 0.38
CLN3-264ENST00000637985 TRAK2O60296 914 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 CER1O95813 267 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 EIF2S3P41091 472 aaKnown RBP17.42■□□□□ 0.38
CLN3-264ENST00000637985 WASP42768 502 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 MAGEA11P43364 429 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 ACOT2P49753 483 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 LY6G5CQ5SRR4 150 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 SLC39A4Q6P5W5 647 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 SPATA2LQ8IUW3 424 aaPredicted RBP17.42■□□□□ 0.38
CLN3-264ENST00000637985 RHBDD1Q8TEB9 315 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 IPO4Q8TEX9 1081 aaKnown RBP17.42■□□□□ 0.38
CLN3-264ENST00000637985 SPATA17Q96L03 361 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 ZSCAN16Q9H4T2 348 aaPredicted RBP17.42■□□□□ 0.38
CLN3-264ENST00000637985 SMPD4Q9NXE4 827 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 TRPM5Q9NZQ8 1165 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 CFAP97Q9P2B7 532 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 FBXO2Q9UK22 296 aaPredicted RBP17.42■□□□□ 0.38
CLN3-264ENST00000637985 L1RE1Q9UN81 338 aa17.42■□□□□ 0.38
CLN3-264ENST00000637985 MUC22E2RYF6 1773 aaPredicted RBP17.41■□□□□ 0.38
CLN3-264ENST00000637985 GOLGA8CPA6NN73 597 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 K7ENM7 598 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 TBCAO75347 108 aaKnown RBP17.41■□□□□ 0.38
CLN3-264ENST00000637985 TULP3O75386 442 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 HLA-EP13747 358 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 TXLNAP40222 546 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 MATKP42679 507 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 USP46P62068 366 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 MYL7Q01449 175 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 BNC1Q01954 994 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 GAD2Q05329 585 aa17.41■□□□□ 0.38
CLN3-264ENST00000637985 PTPRNQ16849 979 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms